Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007571

Physical Location & Seq

Genomic Coordinates Forward (+)

38547330 .. 38548204

Gene Structure 875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00358480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCATCAAGCGGCTCCCGATAACTCGCCCGATAGGAATGCAAAATGGTATTATTCGGCTTTCCACAATGTTACGGCGATTGTTGGTGCCGGAATTCTAGGGTTACCATATGCAATGTCACAACTTGGTTGGATTCACGGAATCACGGTCATTGCTCTTTCTTGGTTGATCACCTTCTACTCGTTACGGCAACTTGTGGAATTGCATGAGAGTGTGCCGGAAAGCGATTCGATCGTTACCCGAACTAGGGCAGCATTGTTTCGGACCCAAACCGGGGTATTGGATTATCATGCCACAACAAACTACCGTCCAAGTGGCTTCGGGCATTGTGTATTGCGTCACCGGTGGCAAATCATTGAAGAAAGTCTTCGAACTTCTCATTCGGCATGGGCATTTGTGGCATCAACAATCCAAGGTACGAAACATCATGAGAATATGAGCTATGGAGTTCGATCTTCTACAACCGCTGGTCAAGTCTTTGATATCTTAAATGGGTGTGGAACAATAGCATTTGCTTTTGCAGGACATAGTGTATCTCTAGAAATTCAAGCTACAATTCCTTCAACTCCGGAGAAACCATCAAAATATGCTATGTGGAAAGGTGTTGTGGTAGCTTATGTTATTGTAGCATTTTGCTATGTCCCGGTTGCGGTGTACGGCTACCGGGCTTATGGCCGTATTGTAGAGGATGATGTTCTCATCTCACTAGATAAGCCTCGCATGGCTAATTGCAGCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

246

Amino Acids

27.19

Weight (kDa)

8.33

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	13 - 75	2.4e-17	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	25 - 86	2.5e-07	Tryptophan/tyrosine permease family
Aa_trans	PF01490	132 - 239	1.1e-16	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71680 AT1G71680
fragaria_vesca	FvH4_5g33070
malus_domestica	MD08G1215100.v1.1 MD15G1398900.v1.1
prunus_persica	Prupe.1G546600_v2.0.a1
pyrus_communis	pycom15g35780
rosa_chinensis	RchiOBHm_Chr4g0414671 RchiOBHm_Chr7g0231241
rosa_laevigata	RLG00000001426 RLG00000008126
rosa_multiflora	Rmu_sc0001192.1_g000019 Rmu_sc0004571.1_g000017
rosa_roxburghii	Rroxscaffold_3G00229410 Rroxscaffold_5G00358480
rosa_rugosa	Rorug04G0129400 Rorug07G0265400
rosa_samantha	Rh4AG187700 Rh4CG200000 Rh7AG418900 Rh7BG394300 Rh7CG438600
rosa_wichuraiana	Rw4G016050 Rw7G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	4 cut(s)	11, 465, 650, 735
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	2 cut(s)	93, 543
AfaI	GTAC	2 cut(s)	418, 656
AfiI	CCNNNNNNNGG	5 cut(s)	246, 247, 273, 274, 649
AgeI	ACCGGT	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	359, 548, 564
AluBI	AGCT	3 cut(s)	441, 551, 614
AluI	AGCT	3 cut(s)	441, 551, 614
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	1 cut(s)	673
ApeKI	GCWGC	2 cut(s)	251, 732
ApoI	RAATTY	2 cut(s)	93, 543
AsiGI	ACCGGT	1 cut(s)	342
Asp700I	GAANNNNTTC	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	264
AsuC2I	CCSGG	3 cut(s)	274, 644, 665
AsuHPI	GGTGA	2 cut(s)	163, 332
AsuII	TTCGAA	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	586
BceAI	ACGGC	4 cut(s)	90, 203, 660, 673
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BclI	TGATCA	1 cut(s)	168
BcnI	CCSGG	3 cut(s)	274, 644, 665
BfaI	CTAG	4 cut(s)	98, 246, 539, 707
BisI	GCNGC	4 cut(s)	12, 252, 733, 736
BlsI	GCNGC	4 cut(s)	13, 253, 734, 737
Bme1390I	CCNGG	3 cut(s)	274, 644, 665
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	3 cut(s)	15, 88, 266
BmrFI	CCNGG	3 cut(s)	274, 644, 665
BmsI	GCATC	2 cut(s)	13, 410
BpiI	GAAGAC	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	370
BpuMI	CCSGG	3 cut(s)	274, 644, 665
BsaJI	CCNNGG	2 cut(s)	273, 412
BsaWI	WCCGGW	2 cut(s)	342, 568
Bsc4I	CCNNNNNNNGG	5 cut(s)	246, 247, 273, 274, 649
Bse118I	RCCGGY	1 cut(s)	342
Bse3DI	GCAATG	2 cut(s)	120, 150
BseAI	TCCGGA	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	273, 412
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	5 cut(s)	246, 247, 273, 274, 649
BseMI	GCAATG	2 cut(s)	120, 150
BseXI	GCAGC	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	675
BshNI	GGYRCC	1 cut(s)	86
BshTI	ACCGGT	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	7 cut(s)	90, 218, 273, 343, 569, 644, 664
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	5 cut(s)	246, 247, 273, 274, 649
BsmFI	GGGAC	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	675
Bsp119I	TTCGAA	1 cut(s)	370
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	3 cut(s)	168, 231, 452
BspACI	CCGC	4 cut(s)	11, 465, 650, 735
BspANI	GGCC	1 cut(s)	675
BspEI	TCCGGA	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	3 cut(s)	15, 88, 266
BspT104I	TTCGAA	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	2 cut(s)	120, 150
BsrFI	RCCGGY	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	273, 412
BssMI	GATC	3 cut(s)	168, 231, 452
BssT1I	CCWWGG	1 cut(s)	412
Bst4CI	ACNGT	2 cut(s)	148, 308
BstBI	TTCGAA	1 cut(s)	370
BstEII	GGTNACC	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	694
BstKTI	GATC	3 cut(s)	171, 234, 455
BstMBI	GATC	3 cut(s)	168, 231, 452
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstPI	GGTNACC	1 cut(s)	102
BstSCI	CCNGG	3 cut(s)	272, 642, 663
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	675
BtsCI	GGATG	1 cut(s)	694
CciI	TCATGA	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	264
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	417, 655
CspAI	ACCGGT	1 cut(s)	342
CviAII	CATG	5 cut(s)	206, 290, 387, 428, 721
CviQI	GTAC	2 cut(s)	417, 655
DpnI	GATC	3 cut(s)	170, 233, 454
DpnII	GATC	3 cut(s)	168, 231, 452
EaeI	YGGCCR	1 cut(s)	673
Eco130I	CCWWGG	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	264
Eco91I	GGTNACC	1 cut(s)	102
EcoO65I	GGTNACC	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	5 cut(s)	209, 293, 390, 431, 724
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	5 cut(s)	205, 289, 386, 427, 720
FauNDI	CATATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	4 cut(s)	12, 252, 733, 736
FokI	GGATG	1 cut(s)	701
Fsp4HI	GCNGC	4 cut(s)	12, 252, 733, 736
FspBI	CTAG	4 cut(s)	98, 246, 539, 707
GluI	GCNGC	4 cut(s)	12, 252, 733, 736
HaeIII	GGCC	1 cut(s)	675
HapII	CCGG	7 cut(s)	90, 218, 273, 343, 569, 644, 664
HgaI	GACGC	1 cut(s)	326
Hin1II	CATG	5 cut(s)	209, 293, 390, 431, 724
HinfI	GANTC	3 cut(s)	133, 141, 227
HpaII	CCGG	7 cut(s)	90, 218, 273, 343, 569, 644, 664
HphI	GGTGA	2 cut(s)	163, 332
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	4 cut(s)	17, 428, 539, 569
Hpy8I	GTNNAC	1 cut(s)	655
HpyAV	CCTTC	2 cut(s)	184, 570
HpyCH4III	ACNGT	2 cut(s)	148, 308
HpyCH4V	TGCA	6 cut(s)	4, 41, 113, 205, 521, 732
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
Hsp92II	CATG	5 cut(s)	209, 293, 390, 431, 724
Kpn2I	TCCGGA	1 cut(s)	568
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	168, 231, 452
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	9 cut(s)	103, 231, 286, 356, 453, 507, 582, 657, 677
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	2 cut(s)	13, 410
MaeI	CTAG	4 cut(s)	98, 246, 539, 707
MaeIII	GTNAC	6 cut(s)	70, 102, 117, 183, 235, 338
MalI	GATC	3 cut(s)	170, 233, 454
MboI	GATC	3 cut(s)	168, 231, 452
MboII	GAAGA	3 cut(s)	359, 371, 447
MluCI	AATT	5 cut(s)	93, 200, 543, 555, 727
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	2 cut(s)	679, 726
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	2 cut(s)	467, 735
MspI	CCGG	7 cut(s)	90, 218, 273, 343, 569, 644, 664
MspR9I	CCNGG	3 cut(s)	274, 644, 665
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	3 cut(s)	274, 644, 665
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	3 cut(s)	168, 231, 452
NlaIII	CATG	5 cut(s)	209, 293, 390, 431, 724
NlaIV	GGNNCC	3 cut(s)	15, 88, 266
NmuCI	GTSAC	2 cut(s)	117, 338
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	370
PagI	TCATGA	1 cut(s)	427
PctI	GAATGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	133, 141, 227
PinAI	ACCGGT	1 cut(s)	342
PkrI	GCNGC	4 cut(s)	13, 253, 734, 737
Ple19I	CGATCG	1 cut(s)	234
PspEI	GGTNACC	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	15, 88, 266
PspPI	GGNCC	1 cut(s)	264
PvuI	CGATCG	1 cut(s)	234
RsaI	GTAC	2 cut(s)	418, 656
RsaNI	GTAC	2 cut(s)	417, 655
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	4 cut(s)	12, 252, 733, 736
Sau3AI	GATC	3 cut(s)	168, 231, 452
Sau96I	GGNCC	1 cut(s)	264
ScrFI	CCNGG	3 cut(s)	274, 644, 665
SetI	ASST	6 cut(s)	176, 418, 443, 553, 604, 616
SfaNI	GCATC	2 cut(s)	13, 410
SfuI	TTCGAA	1 cut(s)	370
SgrAI	CRCCGGYG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	5 cut(s)	93, 200, 543, 555, 727
SsiI	CCGC	4 cut(s)	11, 465, 650, 735
SspMI	CTAG	4 cut(s)	98, 246, 539, 707
StyD4I	CCNGG	3 cut(s)	272, 642, 663
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	2 cut(s)	148, 308
TaqI	TCGA	3 cut(s)	230, 370, 451
TasI	AATT	5 cut(s)	93, 200, 543, 555, 727
TauI	GCSGC	2 cut(s)	14, 738
TfiI	GAWTC	3 cut(s)	133, 141, 227
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TseFI	GTSAC	2 cut(s)	117, 338
TseI	GCWGC	2 cut(s)	251, 732
Tsp45I	GTSAC	2 cut(s)	117, 338
TspGWI	ACGGA	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	2 cut(s)	93, 543
XbaI	TCTAGA	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	4 cut(s)	98, 246, 539, 707
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.