Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007571

Physical Location & Seq

Genomic Coordinates Forward (+)

13885083 .. 13887675

Gene Structure 2593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGAGCAATTCAACTCAACAAGATCAAAGGGGAAATGAACAAGCGGGTGATAGAAGAACTCAGCAGCAAATTGATGCATCTAACTGGCTTCCCATAACTGCTGATAGGAAAGCAAAATGGTATTACTCGGCTTTCCACAATGTTACAGCAGTTGTTGGTGCAGGAGTTCTAGGGTTACCATATGCAATGTCACAAATTGGCTGGGTTCCTGGAATGATAGTCCTTATTCTTTCTTGGTTGATCACATTCTACTCGTTCTGGCAACTTATTGAATTGCATGAGATAGTTCCGGGAAAGCGATTTGATCGTTACCCAGAACTAGGGCAGCATTGTTTTGGACCCAAACTAGGGTATTGGGTCGTCATGCCACAACAATTGATTGTGCAAGTGGCTACAGGCATTGTGTATTGCGTCACAGGTGGGAAATCACTGAAGAAATTCTTTGAACTCATGTGGCCAGTCTGGGGTGATTATAGAACAACATACTTCATCCTCTTTTTCGTTTGCTTGCAATTTGGGATCTCCCAAGCTCCAAATTTCAATTCTTTGAAAGGAGTTTCTCTCCTGGCTGCACTCATGTCTATTGGTTATGCCTCGATAGCATTTGTGGCATCAACAATCCAGGGTGTAAATCATCGTGAGAATGTGACCTATGGGATTCGGTCTTCGACACTTGCTGGTCAAATCTTTGATCTCTTGAATGGGTGTGGAACAATAGCATTTGCTTTTGCGGGACATAGTGTAGCTCTAGAAATTCAAGCTACAATTCCATCAACTCCAGAGAAACCATCAAAACATGCTATGTGGAAAGGTGTTGTGGTAGCTTATGTTGTTGTAGCGTTTTGCTATCTCTCAGTTTCACTGTCCGGCTACTGGGCTTATGGCAGTCATGTAGAGGATGATGTTCTCATCTCACTAAATAAGCCTGCATGGCTAATTGCAGCGGCTAACTTTATGGTGTTTATTCATGTTATTGGAAGTTATCAGGTCTTTAGTATGCCTGTATTTGACCAGATTGAGCAATATCTAGTAGAAAATCGAGGTTTCACCCCTGGACTACCTTTGCGCATCACTGCTCGTAGTTTATATGTTGCTGCAGTAGGGTTTGTTGCAATGTGCATTCCATTTTTCGGAGGCTTGTTAGGATTGTTTGGAGGATTGGTATTCGCATCCACATCATTTTTTATATCCATTGTTATTGGCGTTTTGCTGGCAGTTCTATCACCAATAGGAGGGGCACGTACTATTATTATGGCAGCCAAAACTTACAAACTCTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

427

Amino Acids

47.0

Weight (kDa)

8.89

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	37 - 400	3.9e-82	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	49 - 175	7.1e-10	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71680 AT1G71680
fragaria_vesca	FvH4_5g33070
malus_domestica	MD08G1215100.v1.1 MD15G1398900.v1.1
prunus_persica	Prupe.1G546600_v2.0.a1
pyrus_communis	pycom15g35780
rosa_chinensis	RchiOBHm_Chr4g0414671 RchiOBHm_Chr7g0231241
rosa_laevigata	RLG00000001426 RLG00000008126
rosa_multiflora	Rmu_sc0001192.1_g000019 Rmu_sc0004571.1_g000017
rosa_roxburghii	Rroxscaffold_3G00229410 Rroxscaffold_5G00358480
rosa_rugosa	Rorug04G0129400 Rorug07G0265400
rosa_samantha	Rh4AG187700 Rh4CG200000 Rh7AG418900 Rh7BG394300 Rh7CG438600
rosa_wichuraiana	Rw4G016050 Rw7G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1067
AciI	CCGC	3 cut(s)	44, 731, 944
AclWI	GGATC	1 cut(s)	527
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	3 cut(s)	437, 535, 753
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	1243
AfiI	CCNNNNNNNGG	7 cut(s)	320, 347, 348, 464, 873, 1130, 1232
AgsI	TTSAA	7 cut(s)	12, 272, 446, 541, 550, 700, 758
AjnI	CCWGG	4 cut(s)	208, 564, 621, 1051
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AluBI	AGCT	4 cut(s)	530, 746, 761, 824
AluI	AGCT	4 cut(s)	530, 746, 761, 824
AlwI	GGATC	1 cut(s)	527
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	6 cut(s)	64, 325, 569, 941, 1094, 1256
ApoI	RAATTY	3 cut(s)	437, 535, 753
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	1068
AspS9I	GGNCC	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	4 cut(s)	59, 479, 1039, 1215
AvaII	GGWCC	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	1240
BalI	TGGCCA	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	657
BbvI	GCAGC	6 cut(s)	76, 337, 556, 953, 1081, 1268
BccI	CCATC	2 cut(s)	778, 796
BciT130I	CCWGG	4 cut(s)	210, 566, 623, 1053
BclI	TGATCA	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	5 cut(s)	170, 320, 347, 749, 1028
BfmI	CTRYAG	2 cut(s)	393, 1095
BglI	GCCNNNNNGGC	1 cut(s)	931
BisI	GCNGC	7 cut(s)	65, 326, 570, 942, 945, 1095, 1257
BlsI	GCNGC	7 cut(s)	66, 327, 571, 943, 946, 1096, 1258
Bme1390I	CCNGG	5 cut(s)	210, 291, 566, 623, 1053
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	207, 340
BmrFI	CCNGG	5 cut(s)	210, 291, 566, 623, 1053
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	5 cut(s)	64, 86, 620, 1077, 1178
BmuI	ACTGGG	1 cut(s)	883
BpiI	GAAGAC	1 cut(s)	657
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
BpmI	CTGGAG	1 cut(s)	762
BpuMI	CCSGG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	1241
BsaJI	CCNNGG	2 cut(s)	622, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	1146, 1176
Bsc4I	CCNNNNNNNGG	7 cut(s)	320, 347, 348, 464, 873, 1130, 1232
Bse1I	ACTGG	3 cut(s)	89, 458, 878
Bse3DI	GCAATG	2 cut(s)	192, 1119
BseBI	CCWGG	4 cut(s)	210, 566, 623, 1053
BseDI	CCNNGG	2 cut(s)	622, 1051
BseGI	GGATG	3 cut(s)	489, 904, 1169
BseLI	CCNNNNNNNGG	7 cut(s)	320, 347, 348, 464, 873, 1130, 1232
BseMI	GCAATG	2 cut(s)	192, 1119
BseMII	CTCAG	2 cut(s)	74, 867
BseNI	ACTGG	3 cut(s)	89, 458, 878
BseSI	GKGCMC	1 cut(s)	1240
BseXI	GCAGC	6 cut(s)	76, 337, 556, 953, 1081, 1268
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	2 cut(s)	180, 555
BshFI	GGCC	1 cut(s)	457
BsiSI	CCGG	2 cut(s)	290, 867
BslFI	GGGAC	1 cut(s)	747
BslI	CCNNNNNNNGG	7 cut(s)	320, 347, 348, 464, 873, 1130, 1232
BsmFI	GGGAC	1 cut(s)	747
BsmI	GAATGC	1 cut(s)	1119
BsnI	GGCC	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	1240
Bsp143I	GATC	5 cut(s)	22, 240, 304, 519, 691
BspACI	CCGC	3 cut(s)	44, 731, 944
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	2 cut(s)	73, 866
BspLI	GGNNCC	2 cut(s)	207, 340
BspMAI	CTGCAG	1 cut(s)	1099
BspPI	GGATC	1 cut(s)	527
BsrDI	GCAATG	2 cut(s)	192, 1119
BsrI	ACTGG	3 cut(s)	89, 458, 878
BssECI	CCNNGG	2 cut(s)	622, 1051
BssMI	GATC	5 cut(s)	22, 240, 304, 519, 691
Bst2UI	CCWGG	4 cut(s)	210, 566, 623, 1053
Bst4CI	ACNGT	1 cut(s)	864
BstBAI	YACGTR	1 cut(s)	1241
BstC8I	GCNNGC	3 cut(s)	509, 927, 1212
BstDEI	CTNAG	3 cut(s)	60, 853, 1281
BstEII	GGTNACC	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	489, 904, 1169
BstHHI	GCGC	1 cut(s)	1068
BstKTI	GATC	5 cut(s)	25, 243, 307, 522, 694
BstMBI	GATC	5 cut(s)	22, 240, 304, 519, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	599, 608, 931
BstNI	CCWGG	4 cut(s)	210, 566, 623, 1053
BstNSI	RCATGY	1 cut(s)	800
BstPI	GGTNACC	1 cut(s)	174
BstSCI	CCNGG	5 cut(s)	208, 289, 564, 621, 1051
BstSFI	CTRYAG	2 cut(s)	393, 1095
BstSLI	GKGCMC	1 cut(s)	1240
BstV1I	GCAGC	6 cut(s)	76, 337, 556, 953, 1081, 1268
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	489, 904, 1169
BtsI	GCAGTG	1 cut(s)	1071
BtsIMutI	CAGTG	3 cut(s)	428, 860, 1071
Cac8I	GCNNGC	3 cut(s)	509, 927, 1212
CfoI	GCGC	1 cut(s)	1068
Cfr13I	GGNCC	1 cut(s)	338
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	1242
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviAII	CATG	8 cut(s)	278, 364, 451, 577, 797, 890, 930, 968
CviQI	GTAC	1 cut(s)	1242
DdeI	CTNAG	3 cut(s)	60, 853, 1281
DpnI	GATC	5 cut(s)	24, 242, 306, 521, 693
DpnII	GATC	5 cut(s)	22, 240, 304, 519, 691
EaeI	YGGCCR	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	452
Eco91I	GGTNACC	1 cut(s)	174
EcoO65I	GGTNACC	1 cut(s)	174
EcoRII	CCWGG	4 cut(s)	208, 564, 621, 1051
EcoT22I	ATGCAT	1 cut(s)	79
FaeI	CATG	8 cut(s)	281, 367, 454, 580, 800, 893, 933, 971
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	1 cut(s)	747
FatI	CATG	8 cut(s)	277, 363, 450, 576, 796, 889, 929, 967
FauI	CCCGC	2 cut(s)	37, 724
FauNDI	CATATG	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	7 cut(s)	65, 326, 570, 942, 945, 1095, 1257
FokI	GGATG	3 cut(s)	476, 911, 1156
Fsp4HI	GCNGC	7 cut(s)	65, 326, 570, 942, 945, 1095, 1257
FspBI	CTAG	5 cut(s)	170, 320, 347, 749, 1028
FspI	TGCGCA	1 cut(s)	1067
GlaI	GCGC	1 cut(s)	1067
GluI	GCNGC	7 cut(s)	65, 326, 570, 942, 945, 1095, 1257
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	1 cut(s)	457
HapII	CCGG	2 cut(s)	290, 867
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	1 cut(s)	1068
Hin1II	CATG	8 cut(s)	281, 367, 454, 580, 800, 893, 933, 971
Hin6I	GCGC	1 cut(s)	1066
HinP1I	GCGC	1 cut(s)	1066
HinfI	GANTC	1 cut(s)	658
HpaII	CCGG	2 cut(s)	290, 867
HphI	GGTGA	4 cut(s)	59, 479, 1039, 1215
Hpy188I	TCNGA	1 cut(s)	1133
Hpy188III	TCNNGA	4 cut(s)	638, 697, 749, 779
HpyCH4III	ACNGT	1 cut(s)	864
HpyCH4IV	ACGT	1 cut(s)	1240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	599, 608, 931
HpyF3I	CTNAG	3 cut(s)	60, 853, 1281
HpySE526I	ACGT	1 cut(s)	1240
Hsp92II	CATG	8 cut(s)	281, 367, 454, 580, 800, 893, 933, 971
HspAI	GCGC	1 cut(s)	1066
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	22, 240, 304, 519, 691
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	6 cut(s)	76, 337, 556, 953, 1081, 1268
LweI	GCATC	5 cut(s)	64, 86, 620, 1077, 1178
MaeI	CTAG	5 cut(s)	170, 320, 347, 749, 1028
MaeII	ACGT	1 cut(s)	1240
MaeIII	GTNAC	6 cut(s)	142, 174, 189, 308, 412, 646
MalI	GATC	5 cut(s)	24, 242, 306, 521, 693
MboI	GATC	5 cut(s)	22, 240, 304, 519, 691
MboII	GAAGA	3 cut(s)	66, 445, 657
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	1 cut(s)	519
MhlI	GDGCHC	1 cut(s)	1240
MlsI	TGGCCA	1 cut(s)	457
MluNI	TGGCCA	1 cut(s)	457
MnlI	CCTC	7 cut(s)	503, 604, 889, 1034, 1127, 1148, 1226
Mox20I	TGGCCA	1 cut(s)	457
Mph1103I	ATGCAT	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	457
Msp20I	TGGCCA	1 cut(s)	457
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	2 cut(s)	290, 867
MspR9I	CCNGG	5 cut(s)	210, 291, 566, 623, 1053
MunI	CAATTG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	1119
MvaI	CCWGG	4 cut(s)	210, 566, 623, 1053
MwoI	GCNNNNNNNGC	3 cut(s)	599, 608, 931
NciI	CCSGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	5 cut(s)	22, 240, 304, 519, 691
NlaIII	CATG	8 cut(s)	281, 367, 454, 580, 800, 893, 933, 971
NlaIV	GGNNCC	2 cut(s)	207, 340
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	3 cut(s)	189, 412, 646
NsbI	TGCGCA	1 cut(s)	1067
NsiI	ATGCAT	1 cut(s)	79
NspI	RCATGY	1 cut(s)	800
PctI	GAATGC	1 cut(s)	1119
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	658
PfoI	TCCNGGA	2 cut(s)	208, 289
PkrI	GCNGC	7 cut(s)	66, 327, 571, 943, 946, 1096, 1258
Ppu21I	YACGTR	1 cut(s)	1241
Psp6I	CCWGG	4 cut(s)	208, 564, 621, 1051
PspEI	GGTNACC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	4 cut(s)	208, 564, 621, 1051
PspN4I	GGNNCC	2 cut(s)	207, 340
PspPI	GGNCC	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	1099
PsuI	RGATCY	1 cut(s)	519
RsaI	GTAC	1 cut(s)	1243
RsaNI	GTAC	1 cut(s)	1242
SatI	GCNGC	7 cut(s)	65, 326, 570, 942, 945, 1095, 1257
Sau3AI	GATC	5 cut(s)	22, 240, 304, 519, 691
Sau96I	GGNCC	1 cut(s)	338
ScrFI	CCNGG	5 cut(s)	210, 291, 566, 623, 1053
SduI	GDGCHC	1 cut(s)	1240
SfaNI	GCATC	5 cut(s)	64, 86, 620, 1077, 1178
SfcI	CTRYAG	2 cut(s)	393, 1095
SinI	GGWCC	1 cut(s)	338
SsiI	CCGC	3 cut(s)	44, 731, 944
SspMI	CTAG	5 cut(s)	170, 320, 347, 749, 1028
StyD4I	CCNGG	5 cut(s)	208, 289, 564, 621, 1051
TaaI	ACNGT	1 cut(s)	864
TaiI	ACGT	1 cut(s)	1243
TaqI	TCGA	3 cut(s)	596, 668, 1039
TaqII	GACCGA	1 cut(s)	651
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	1 cut(s)	658
TscAI	CASTG	3 cut(s)	435, 867, 1078
TseFI	GTSAC	3 cut(s)	189, 412, 646
TseI	GCWGC	6 cut(s)	64, 325, 569, 941, 1094, 1256
Tsp45I	GTSAC	3 cut(s)	189, 412, 646
TspDTI	ATGAA	3 cut(s)	51, 478, 956
TspRI	CASTG	3 cut(s)	435, 867, 1078
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	3 cut(s)	437, 535, 753
XbaI	TCTAGA	1 cut(s)	748
XceI	RCATGY	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	5 cut(s)	170, 320, 347, 749, 1028
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.