Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007571

Physical Location & Seq

Genomic Coordinates Reverse (-)

51407558 .. 51411497

Gene Structure 3940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGTTTGTTTTGAGTCATTTAGTTGAGTTTTACTCATACGAGCTTAAAAAGCTTACCGGGTTTGTTATTCCAACCCGAACTCAGCACCAAATTGATGCATCTAACTGGCTTCCCATAACTGCTGATAGGAAAGCAAAATGGTATTACTCGGCTTTCCACAATGTTACGGCAGTTGTTGGTGCAGGAGTTCTAGGGTTACCATATGCAATGTCACAAATTGGATGGGTTCCTGGAATGATAGTCCTTATTCTTTCTTGGTTGATCACATTCTACTCGTTCTGGCAACTTATTGAATTGCATGAGATAGTTCCGGGAAAGCGATTTGATCGTTACCCAGAACTAGGGCAGCATTGTTTTGGACCCAAACTAGGGTATTGGATCGTCATGCCACAACAATTGATTGTGCAAGTGGCTTCAGGCATTGTGTATTGCGTCACAGGTGGGAAGTCACTGAAGAAATTCTTTGAACTCCTCTGGCCAGTCTGGGGTGATTATAGAACAACATACTTCATCCTCTTTTTCGTTTGCTTGCAATTTGGGATCTCCCAAGCTCCAAATTTCAATTCTTTGAAAGGAGTTTCTCTCCTGGCTGCGCTCATGTCTATTGGTTATGCCTCAATAGCATTTGTGGCATCAACAATTCAGGGTGTAAATCATCGTGAGAATGTGACCTATGGGATTCGGTCTTCGACACTTGCTGGTCAAATCTTTGATCTCTTGAATGGGTGTGGAACAATAGCATTTGCTTTTGCAGGACATAGTGTAGCTCTAGAAATTCAAGCTACAATTCCATCAACTCCAGAGAAACCATCAAAACATGCTATGTGGAAAGGTGTTGTGGTAGCTTATGTTGTTGTAGCGTTTTGCTATCTCTCAGTTTCACTATCCGGCTACTGGGCTTATGGCAGTCATGTAGAGGATGATGTTCTCATCTCACTAGATAAACCTGCATGGCTAATTGCAGCGGCTAATTTCATGGTGTTTATTCATGTTATTGGAAGTTATCAGATCTTTAGTATGCCTGTATTTGACCAGATTGAGCAATATCTAGTAGAAAATCGAGGTTTCACCCCTGGACTACCTTTGCGCATCATTGCTCGTAGTTTATATGTTGCTGCAGCAGGGTTTATTGCAATGTGCATTCCATTTTTTGGAGGCTTGTTAGGATTATTTGGAGGATTGGTATTCGCATCCACATCATTTTTTATGCCTTGTATTATGTGGATTGTCACCCAAAAACCAAAAGCATTTAGCTTTCACTGGACTTTTTCTTGGATATCCATTGTTATTGGCGTTTTGCTGGCAGTTCTATCACCAATAGGAGGGGCACGTACAATTATTATGGCAGCCAAAACTTACAAACTCTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

457

Amino Acids

50.8

Weight (kDa)

9.0

Isoelectric Point (pI)

27.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	44 - 441	6.1e-90	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	56 - 179	2.6e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71680 AT1G71680
fragaria_vesca	FvH4_5g33070
malus_domestica	MD08G1215100.v1.1 MD15G1398900.v1.1
prunus_persica	Prupe.1G546600_v2.0.a1
pyrus_communis	pycom15g35780
rosa_chinensis	RchiOBHm_Chr4g0414671 RchiOBHm_Chr7g0231241
rosa_laevigata	RLG00000001426 RLG00000008126
rosa_multiflora	Rmu_sc0001192.1_g000019 Rmu_sc0004571.1_g000017
rosa_roxburghii	Rroxscaffold_3G00229410 Rroxscaffold_5G00358480
rosa_rugosa	Rorug04G0129400 Rorug07G0265400
rosa_samantha	Rh4AG187700 Rh4CG200000 Rh7AG418900 Rh7BG394300 Rh7CG438600
rosa_wichuraiana	Rw4G016050 Rw7G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1088
Acc36I	ACCTGC	1 cut(s)	955
AccB7I	CCANNNNNTGG	1 cut(s)	1151
AciI	CCGC	1 cut(s)	965
AclWI	GGATC	2 cut(s)	386, 548
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	3 cut(s)	458, 556, 774
AcuI	CTGAAG	2 cut(s)	399, 473
AfaI	GTAC	1 cut(s)	1333
AfiI	CCNNNNNNNGG	7 cut(s)	341, 368, 369, 485, 894, 1151, 1322
AgsI	TTSAA	6 cut(s)	293, 467, 562, 571, 721, 779
AjnI	CCWGG	3 cut(s)	229, 585, 1072
AjuI	GAANNNNNNNTTGG	2 cut(s)	547, 579
AluBI	AGCT	7 cut(s)	43, 52, 551, 767, 782, 845, 1254
AluI	AGCT	7 cut(s)	43, 52, 551, 767, 782, 845, 1254
AlwI	GGATC	2 cut(s)	386, 548
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	6 cut(s)	346, 590, 962, 1115, 1118, 1346
ApoI	RAATTY	3 cut(s)	458, 556, 774
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	2 cut(s)	595, 1089
AspS9I	GGNCC	1 cut(s)	359
AsuC2I	CCSGG	2 cut(s)	58, 312
AsuHPI	GGTGA	4 cut(s)	500, 1060, 1222, 1305
AvaII	GGWCC	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	1330
BalI	TGGCCA	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	678
BbvI	GCAGC	6 cut(s)	358, 577, 974, 1102, 1130, 1358
BccI	CCATC	3 cut(s)	216, 799, 817
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	3 cut(s)	231, 587, 1074
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	2 cut(s)	58, 312
BfaI	CTAG	6 cut(s)	191, 341, 368, 770, 938, 1049
BfmI	CTRYAG	1 cut(s)	1116
BfuAI	ACCTGC	1 cut(s)	955
BglII	AGATCT	1 cut(s)	1008
BisI	GCNGC	7 cut(s)	347, 591, 963, 966, 1116, 1119, 1347
BlsI	GCNGC	7 cut(s)	348, 592, 964, 967, 1117, 1120, 1348
Bme1390I	CCNGG	5 cut(s)	58, 231, 312, 587, 1074
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	228, 361
BmrFI	CCNGG	5 cut(s)	58, 231, 312, 587, 1074
BmrI	ACTGGG	1 cut(s)	904
BmsI	GCATC	5 cut(s)	85, 107, 641, 1098, 1199
BmuI	ACTGGG	1 cut(s)	904
BpiI	GAAGAC	1 cut(s)	678
BplI	GAGNNNNNCTC	4 cut(s)	17, 49, 567, 599
BpmI	CTGGAG	1 cut(s)	783
BpuMI	CCSGG	2 cut(s)	58, 312
BsaAI	YACGTR	1 cut(s)	1331
BsaJI	CCNNGG	1 cut(s)	1072
BsaXI	ACNNNNNCTCC	2 cut(s)	1167, 1197
Bsc4I	CCNNNNNNNGG	7 cut(s)	341, 368, 369, 485, 894, 1151, 1322
Bse1I	ACTGG	4 cut(s)	110, 479, 899, 1265
Bse3DI	GCAATG	3 cut(s)	213, 1092, 1140
BseBI	CCWGG	3 cut(s)	231, 587, 1074
BseDI	CCNNGG	1 cut(s)	1072
BseGI	GGATG	4 cut(s)	227, 510, 925, 1190
BseLI	CCNNNNNNNGG	7 cut(s)	341, 368, 369, 485, 894, 1151, 1322
BseMI	GCAATG	3 cut(s)	213, 1092, 1140
BseMII	CTCAG	2 cut(s)	95, 888
BseNI	ACTGG	4 cut(s)	110, 479, 899, 1265
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	1330
BseXI	GCAGC	6 cut(s)	358, 577, 974, 1102, 1130, 1358
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	478
BsiSI	CCGG	3 cut(s)	57, 311, 888
BslI	CCNNNNNNNGG	7 cut(s)	341, 368, 369, 485, 894, 1151, 1322
BsmI	GAATGC	1 cut(s)	1140
BsnI	GGCC	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	1330
Bsp143I	GATC	6 cut(s)	261, 325, 378, 540, 712, 1008
BspACI	CCGC	1 cut(s)	965
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	2 cut(s)	94, 887
BspLI	GGNNCC	2 cut(s)	228, 361
BspMAI	CTGCAG	1 cut(s)	1120
BspMI	ACCTGC	1 cut(s)	955
BspPI	GGATC	2 cut(s)	386, 548
BsrDI	GCAATG	3 cut(s)	213, 1092, 1140
BsrI	ACTGG	4 cut(s)	110, 479, 899, 1265
BssECI	CCNNGG	1 cut(s)	1072
BssMI	GATC	6 cut(s)	261, 325, 378, 540, 712, 1008
Bst2UI	CCWGG	3 cut(s)	231, 587, 1074
BstBAI	YACGTR	1 cut(s)	1331
BstC8I	GCNNGC	2 cut(s)	530, 1302
BstDEI	CTNAG	3 cut(s)	81, 874, 1371
BstEII	GGTNACC	1 cut(s)	195
BstF5I	GGATG	4 cut(s)	227, 510, 925, 1190
BstHHI	GCGC	2 cut(s)	595, 1089
BstKTI	GATC	6 cut(s)	264, 328, 381, 543, 715, 1011
BstMBI	GATC	6 cut(s)	261, 325, 378, 540, 712, 1008
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 620, 629
BstNI	CCWGG	3 cut(s)	231, 587, 1074
BstNSI	RCATGY	1 cut(s)	821
BstPI	GGTNACC	1 cut(s)	195
BstSCI	CCNGG	5 cut(s)	56, 229, 310, 585, 1072
BstSFI	CTRYAG	1 cut(s)	1116
BstSLI	GKGCMC	1 cut(s)	1330
BstV1I	GCAGC	6 cut(s)	358, 577, 974, 1102, 1130, 1358
BstV2I	GAAGAC	1 cut(s)	678
BstX2I	RGATCY	2 cut(s)	540, 1008
BstYI	RGATCY	2 cut(s)	540, 1008
BsuRI	GGCC	1 cut(s)	478
BtsCI	GGATG	4 cut(s)	227, 510, 925, 1190
BtsIMutI	CAGTG	2 cut(s)	449, 1258
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	2 cut(s)	530, 1302
CfoI	GCGC	2 cut(s)	595, 1089
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	1332
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	8 cut(s)	299, 385, 598, 818, 911, 951, 976, 989
CviQI	GTAC	1 cut(s)	1332
DdeI	CTNAG	3 cut(s)	81, 874, 1371
DpnI	GATC	6 cut(s)	263, 327, 380, 542, 714, 1010
DpnII	GATC	6 cut(s)	261, 325, 378, 540, 712, 1008
EaeI	YGGCCR	1 cut(s)	476
Eco32I	GATATC	1 cut(s)	1278
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	2 cut(s)	399, 473
Eco91I	GGTNACC	1 cut(s)	195
EcoO65I	GGTNACC	1 cut(s)	195
EcoRII	CCWGG	3 cut(s)	229, 585, 1072
EcoRV	GATATC	1 cut(s)	1278
EcoT22I	ATGCAT	1 cut(s)	100
FaeI	CATG	8 cut(s)	302, 388, 601, 821, 914, 954, 979, 992
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	8 cut(s)	298, 384, 597, 817, 910, 950, 975, 988
FauNDI	CATATG	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	7 cut(s)	347, 591, 963, 966, 1116, 1119, 1347
FokI	GGATG	4 cut(s)	234, 497, 932, 1177
Fsp4HI	GCNGC	7 cut(s)	347, 591, 963, 966, 1116, 1119, 1347
FspBI	CTAG	6 cut(s)	191, 341, 368, 770, 938, 1049
FspI	TGCGCA	1 cut(s)	1088
GlaI	GCGC	2 cut(s)	594, 1088
GluI	GCNGC	7 cut(s)	347, 591, 963, 966, 1116, 1119, 1347
GsuI	CTGGAG	1 cut(s)	783
HaeIII	GGCC	1 cut(s)	478
HapII	CCGG	3 cut(s)	57, 311, 888
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	2 cut(s)	595, 1089
Hin1II	CATG	8 cut(s)	302, 388, 601, 821, 914, 954, 979, 992
Hin6I	GCGC	2 cut(s)	593, 1087
HinP1I	GCGC	2 cut(s)	593, 1087
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	2 cut(s)	13, 679
HpaII	CCGG	3 cut(s)	57, 311, 888
HphI	GGTGA	4 cut(s)	500, 1060, 1222, 1305
Hpy188I	TCNGA	1 cut(s)	1008
Hpy188III	TCNNGA	4 cut(s)	659, 718, 770, 800
HpyCH4IV	ACGT	1 cut(s)	1330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 620, 629
HpyF3I	CTNAG	3 cut(s)	81, 874, 1371
HpySE526I	ACGT	1 cut(s)	1330
Hsp92II	CATG	8 cut(s)	302, 388, 601, 821, 914, 954, 979, 992
HspAI	GCGC	2 cut(s)	593, 1087
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	6 cut(s)	261, 325, 378, 540, 712, 1008
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	6 cut(s)	358, 577, 974, 1102, 1130, 1358
LweI	GCATC	5 cut(s)	85, 107, 641, 1098, 1199
MaeI	CTAG	6 cut(s)	191, 341, 368, 770, 938, 1049
MaeII	ACGT	1 cut(s)	1330
MaeIII	GTNAC	8 cut(s)	163, 195, 210, 329, 433, 447, 667, 1228
MalI	GATC	6 cut(s)	263, 327, 380, 542, 714, 1010
MboI	GATC	6 cut(s)	261, 325, 378, 540, 712, 1008
MboII	GAAGA	2 cut(s)	466, 678
MfeI	CAATTG	1 cut(s)	395
MflI	RGATCY	2 cut(s)	540, 1008
MhlI	GDGCHC	1 cut(s)	1330
MlsI	TGGCCA	1 cut(s)	478
MluNI	TGGCCA	1 cut(s)	478
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	8 cut(s)	482, 524, 625, 910, 1055, 1148, 1169, 1316
Mox20I	TGGCCA	1 cut(s)	478
Mph1103I	ATGCAT	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	478
MseI	TTAA	1 cut(s)	45
Msp20I	TGGCCA	1 cut(s)	478
MspA1I	CMGCKG	1 cut(s)	965
MspI	CCGG	3 cut(s)	57, 311, 888
MspR9I	CCNGG	5 cut(s)	58, 231, 312, 587, 1074
MunI	CAATTG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	1140
MvaI	CCWGG	3 cut(s)	231, 587, 1074
MwoI	GCNNNNNNNGC	3 cut(s)	49, 620, 629
NciI	CCSGG	2 cut(s)	58, 312
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	6 cut(s)	261, 325, 378, 540, 712, 1008
NlaIII	CATG	8 cut(s)	302, 388, 601, 821, 914, 954, 979, 992
NlaIV	GGNNCC	2 cut(s)	228, 361
NmeAIII	GCCGAG	1 cut(s)	128
NmuCI	GTSAC	5 cut(s)	210, 433, 447, 667, 1228
NsbI	TGCGCA	1 cut(s)	1088
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	1 cut(s)	821
PctI	GAATGC	1 cut(s)	1140
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	679
PflMI	CCANNNNNTGG	1 cut(s)	1151
PfoI	TCCNGGA	2 cut(s)	229, 310
PkrI	GCNGC	7 cut(s)	348, 592, 964, 967, 1117, 1120, 1348
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
Ppu21I	YACGTR	1 cut(s)	1331
Psp6I	CCWGG	3 cut(s)	229, 585, 1072
PspEI	GGTNACC	1 cut(s)	195
PspGI	CCWGG	3 cut(s)	229, 585, 1072
PspN4I	GGNNCC	2 cut(s)	228, 361
PspPI	GGNCC	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	1120
PsuI	RGATCY	2 cut(s)	540, 1008
RsaI	GTAC	1 cut(s)	1333
RsaNI	GTAC	1 cut(s)	1332
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	7 cut(s)	347, 591, 963, 966, 1116, 1119, 1347
Sau3AI	GATC	6 cut(s)	261, 325, 378, 540, 712, 1008
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	5 cut(s)	58, 231, 312, 587, 1074
SduI	GDGCHC	1 cut(s)	1330
SfaNI	GCATC	5 cut(s)	85, 107, 641, 1098, 1199
SfcI	CTRYAG	1 cut(s)	1116
SinI	GGWCC	1 cut(s)	359
SsiI	CCGC	1 cut(s)	965
SspMI	CTAG	6 cut(s)	191, 341, 368, 770, 938, 1049
StyD4I	CCNGG	5 cut(s)	56, 229, 310, 585, 1072
TaiI	ACGT	1 cut(s)	1333
TaqI	TCGA	2 cut(s)	689, 1060
TaqII	GACCGA	1 cut(s)	672
TauI	GCSGC	1 cut(s)	968
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	2 cut(s)	456, 1265
TseFI	GTSAC	5 cut(s)	210, 433, 447, 667, 1228
TseI	GCWGC	6 cut(s)	346, 590, 962, 1115, 1118, 1346
Tsp45I	GTSAC	5 cut(s)	210, 433, 447, 667, 1228
TspDTI	ATGAA	3 cut(s)	499, 964, 977
TspRI	CASTG	2 cut(s)	456, 1265
Van91I	CCANNNNNTGG	1 cut(s)	1151
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	3 cut(s)	458, 556, 774
XbaI	TCTAGA	1 cut(s)	769
XceI	RCATGY	1 cut(s)	821
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	6 cut(s)	191, 341, 368, 770, 938, 1049
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.