Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001192.1

Orthogroup ID

OG0007571

Physical Location & Seq

Genomic Coordinates Forward (+)

75450 .. 76439

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001192.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgccacaacaaactactgtccaagtggcttcaggcattgtgtattgcgtcaccggtggcaaatcattgaagaaagtctttgaacttcttattccggcatggggtgatattagaacaacttacttcatccttttctttatttgcttgcaatttgtgatatcacaatctccaaatttcaattctttaaagggagtttctctcttggctgcggtcatgtcctgtggttattctttaatagcatttgtggcatcaacaatccaaggtacgaaacatcatgagaatatgagctatggagttcgatcttctacaactgctggtcaagtctttgatatcttgaatgggtgtggaacaatagcatttgcttttgcaggacatagtgtatctttagaaattcaagctacaattccttcaactccagagaaaccatcaaaatatgctatgtggaaaggtgttgtggtagcttatgttattgtagcattttgctatgtcccggttgcagtgtctggctactgggcttatggccgtcttgtagaggatgatgttctcatctcactagataagcctgcatggctaattgcagcggctaactttatggtgtttcttcatgttattggaagctaccaagttttcagtatgcccgtgtttgaccagatcgagcaatatttggtagaaaatcggggttttacccctggacgacctttgcggatcattgctcgtagtttatatgtagccgcagcagggtttgttgcaatgtgcattccattttttggaggcttattaggattatttggaggcttggtattctcctctatatcgttttatatgccttgtgttatgtggcttatcacccaaaaaccaaaagcatttagctttcattggcttacttcatgggtatgcattgttatgggcgtcctgctggcagttctttcaccaataggaggggcacgtacaatttacatgcaagccaaaacttaccatttcttttcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

329

Amino Acids

36.1

Weight (kDa)

8.95

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71680 AT1G71680
fragaria_vesca	FvH4_5g33070
malus_domestica	MD08G1215100.v1.1 MD15G1398900.v1.1
prunus_persica	Prupe.1G546600_v2.0.a1
pyrus_communis	pycom15g35780
rosa_chinensis	RchiOBHm_Chr4g0414671 RchiOBHm_Chr7g0231241
rosa_laevigata	RLG00000001426 RLG00000008126
rosa_multiflora	Rmu_sc0001192.1_g000019 Rmu_sc0004571.1_g000017
rosa_roxburghii	Rroxscaffold_3G00229410 Rroxscaffold_5G00358480
rosa_rugosa	Rorug04G0129400 Rorug07G0265400
rosa_samantha	Rh4AG187700 Rh4CG200000 Rh7AG418900 Rh7BG394300 Rh7CG438600
rosa_wichuraiana	Rw4G016050 Rw7G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	767
AciI	CCGC	4 cut(s)	209, 581, 703, 732
AclWI	GGATC	1 cut(s)	713
AcoI	YGGCCR	1 cut(s)	520
AcsI	RAATTY	2 cut(s)	172, 390
AcuI	CTGAAG	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	909
AfaI	GTAC	2 cut(s)	265, 949
AfiI	CCNNNNNNNGG	4 cut(s)	101, 738, 767, 938
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	6 cut(s)	70, 83, 178, 337, 395, 411
AjnI	CCWGG	1 cut(s)	688
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	5 cut(s)	288, 398, 461, 618, 870
AluI	AGCT	5 cut(s)	288, 398, 461, 618, 870
AlwI	GGATC	1 cut(s)	713
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	3 cut(s)	206, 578, 734
ApoI	RAATTY	2 cut(s)	172, 390
AsiGI	ACCGGT	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	4 cut(s)	43, 116, 838, 921
BaeGI	GKGCMC	1 cut(s)	946
BbvI	GCAGC	3 cut(s)	193, 590, 746
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	1 cut(s)	507
BciT130I	CCWGG	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	491
BfaI	CTAG	1 cut(s)	554
BglI	GCCNNNNNGGC	1 cut(s)	568
BisI	GCNGC	5 cut(s)	207, 579, 582, 732, 735
BlsI	GCNGC	5 cut(s)	208, 580, 583, 733, 736
Bme1390I	CCNGG	2 cut(s)	491, 690
BmrFI	CCNGG	2 cut(s)	491, 690
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	1 cut(s)	257
BmuI	ACTGGG	1 cut(s)	520
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BpmI	CTGGAG	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	491
BsaAI	YACGTR	1 cut(s)	947
BsaHI	GRCGYC	1 cut(s)	909
BsaJI	CCNNGG	2 cut(s)	259, 688
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 738, 767, 938
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	515
Bse3DI	GCAATG	2 cut(s)	708, 756
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	2 cut(s)	259, 688
BseGI	GGATG	2 cut(s)	126, 541
BseLI	CCNNNNNNNGG	4 cut(s)	101, 738, 767, 938
BseMI	GCAATG	2 cut(s)	708, 756
BseNI	ACTGG	1 cut(s)	515
BseRI	GAGGAG	1 cut(s)	796
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	3 cut(s)	193, 590, 746
BshFI	GGCC	1 cut(s)	522
BshTI	ACCGGT	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	54, 95, 491
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	4 cut(s)	101, 738, 767, 938
BsmFI	GGGAC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	756
BsnI	GGCC	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	946
Bsp143I	GATC	3 cut(s)	299, 651, 705
BspACI	CCGC	4 cut(s)	209, 581, 703, 732
BspANI	GGCC	1 cut(s)	522
BspHI	TCATGA	1 cut(s)	274
BspPI	GGATC	1 cut(s)	713
BsrDI	GCAATG	2 cut(s)	708, 756
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	259, 688
BssMI	GATC	3 cut(s)	299, 651, 705
BssNI	GRCGYC	1 cut(s)	909
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	909
BstBAI	YACGTR	1 cut(s)	947
BstC8I	GCNNGC	4 cut(s)	146, 564, 918, 963
BstF5I	GGATG	2 cut(s)	126, 541
BstKTI	GATC	3 cut(s)	302, 654, 708
BstMBI	GATC	3 cut(s)	299, 651, 705
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 568
BstNI	CCWGG	1 cut(s)	690
BstNSI	RCATGY	1 cut(s)	961
BstSCI	CCNGG	2 cut(s)	489, 688
BstSLI	GKGCMC	1 cut(s)	946
BstV1I	GCAGC	3 cut(s)	193, 590, 746
BsuRI	GGCC	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	126, 541
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	4 cut(s)	146, 564, 918, 963
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	53
CseI	GACGC	2 cut(s)	37, 898
Csp6I	GTAC	2 cut(s)	264, 948
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	7 cut(s)	99, 214, 275, 567, 605, 888, 958
CviQI	GTAC	2 cut(s)	264, 948
DpnI	GATC	3 cut(s)	301, 653, 707
DpnII	GATC	3 cut(s)	299, 651, 705
DraI	TTTAAA	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	259
Eco32I	GATATC	2 cut(s)	159, 331
Eco57I	CTGAAG	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	688
EcoRV	GATATC	2 cut(s)	159, 331
EcoT14I	CCWWGG	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	899
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	7 cut(s)	102, 217, 278, 570, 608, 891, 961
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	7 cut(s)	98, 213, 274, 566, 604, 887, 957
Fnu4HI	GCNGC	5 cut(s)	207, 579, 582, 732, 735
FokI	GGATG	2 cut(s)	113, 548
Fsp4HI	GCNGC	5 cut(s)	207, 579, 582, 732, 735
FspBI	CTAG	1 cut(s)	554
GluI	GCNGC	5 cut(s)	207, 579, 582, 732, 735
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	3 cut(s)	54, 95, 491
HgaI	GACGC	2 cut(s)	37, 898
Hin1I	GRCGYC	1 cut(s)	909
Hin1II	CATG	7 cut(s)	102, 217, 278, 570, 608, 891, 961
HpaII	CCGG	3 cut(s)	54, 95, 491
HphI	GGTGA	4 cut(s)	43, 116, 838, 921
Hpy188III	TCNNGA	3 cut(s)	275, 334, 416
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	946
HpyCH4V	TGCA	9 cut(s)	148, 368, 497, 566, 578, 749, 756, 897, 961
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 568
HpySE526I	ACGT	1 cut(s)	946
Hsp92I	GRCGYC	1 cut(s)	909
Hsp92II	CATG	7 cut(s)	102, 217, 278, 570, 608, 891, 961
Kzo9I	GATC	3 cut(s)	299, 651, 705
Lsp1109I	GCAGC	3 cut(s)	193, 590, 746
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	1 cut(s)	946
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	301, 653, 707
MboI	GATC	3 cut(s)	299, 651, 705
MboII	GAAGA	3 cut(s)	82, 294, 593
MhlI	GDGCHC	1 cut(s)	946
MluCI	AATT	7 cut(s)	149, 172, 178, 390, 402, 573, 951
MnlI	CCTC	5 cut(s)	526, 764, 785, 817, 932
Mph1103I	ATGCAT	1 cut(s)	899
MseI	TTAA	2 cut(s)	185, 233
MslI	CAYNNNNRTG	2 cut(s)	892, 902
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	3 cut(s)	54, 95, 491
MspR9I	CCNGG	2 cut(s)	491, 690
Mva1269I	GAATGC	1 cut(s)	756
MvaI	CCWGG	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	245, 568
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	3 cut(s)	299, 651, 705
NlaIII	CATG	7 cut(s)	102, 217, 278, 570, 608, 891, 961
NmuCI	GTSAC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	899
NspI	RCATGY	1 cut(s)	961
PagI	TCATGA	1 cut(s)	274
PctI	GAATGC	1 cut(s)	756
PflMI	CCANNNNNTGG	1 cut(s)	767
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	208, 580, 583, 733, 736
Ppu21I	YACGTR	1 cut(s)	947
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	503
RsaI	GTAC	2 cut(s)	265, 949
RsaNI	GTAC	2 cut(s)	264, 948
RseI	CAYNNNNRTG	2 cut(s)	892, 902
SaqAI	TTAA	2 cut(s)	185, 233
SatI	GCNGC	5 cut(s)	207, 579, 582, 732, 735
Sau3AI	GATC	3 cut(s)	299, 651, 705
ScrFI	CCNGG	2 cut(s)	491, 690
SduI	GDGCHC	1 cut(s)	946
SetI	ASST	9 cut(s)	265, 290, 400, 451, 463, 620, 700, 872, 949
SfaNI	GCATC	1 cut(s)	257
SgrAI	CRCCGGYG	1 cut(s)	53
SmiMI	CAYNNNNRTG	2 cut(s)	892, 902
Sse9I	AATT	7 cut(s)	149, 172, 178, 390, 402, 573, 951
SsiI	CCGC	4 cut(s)	209, 581, 703, 732
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	2 cut(s)	489, 688
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	949
TaqI	TCGA	2 cut(s)	298, 654
TasI	AATT	7 cut(s)	149, 172, 178, 390, 402, 573, 951
TauI	GCSGC	2 cut(s)	584, 734
Tru1I	TTAA	2 cut(s)	185, 233
Tru9I	TTAA	2 cut(s)	185, 233
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	3 cut(s)	206, 578, 734
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	115, 593, 863, 876
TspRI	CASTG	1 cut(s)	504
Van91I	CCANNNNNTGG	1 cut(s)	767
XapI	RAATTY	2 cut(s)	172, 390
XceI	RCATGY	1 cut(s)	961
XspI	CTAG	1 cut(s)	554
Zsp2I	ATGCAT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.