Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007571

Physical Location & Seq

Genomic Coordinates Reverse (-)

25961653 .. 25964244

Gene Structure 2592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGAGCAACCTAACTCAGTCGACTACCCTTCCTCAGCAAAACAACCAAGATGAAAGGGGAAATGAACAAGTTGGTGATAAAACTACAAGCCAGCAACAAATTGATGCATCAAGTTGGCTCCCGATAACTGCTGATAGGAATGCAAAATGGTATTATTCGGCTTTCCACAATGTTACTGCGACTGTTGGTGCCGGAATTCTAGGGTTACCATATGCAATGTCACAACTTGGCTGGATTCCTGGAATCACAGTCATTGCTCTTTCTTGGTTGATCACCTTCTACTCGTTCTGGCAACTTGTGGAATTGCATGAGAGTGTGCCCGGAAAGCGATTCGATCGTTACCCAGAACTAGGGCAGCATTGTTTCGGACCCAAACTGGGGTATTGGATTATCATGCCACAACAAACTACTGTCCAAGTAGCTTCAGGCATTGTGTATTGCGTCACCGGTGGCAAATCATTGAAGAAAGTCTTTGAACTTCTCATTCCGGCATGGGGTGATATTAGAACAACTTACTTCATCCTTTTCTTTATTTGCTTGCAATTTGTGATATCCCAATCTCCAAATTTCAATTCTTTAAAGGGAGTTTCTCTCTTGGCCGCGATCATGTCTTGTGGTTATTCTTTAATAGCATTTGTGGCATCAACAATCCAAGGTACGAAACATCATGAGAATATGAGCTATGGAGTTCGATCTTCTACAACTGCTGGTCAAGTCTTTGATATCTTGAATGGGTGTGGAACAATAGCATTTGCTTTTGCAGGACATAGTGTATCTCTAGAAATTCAAGCTACAATTCCTTCAACTCCAGAGAAACCATCAAAATATGCTATGTGGAAAGGTGTTGTGGTAGCTTATGTTATTGTAGCATTTTGCTATGTCCCGGTTGCAGTGTCTGGCTACTGGGCTTATGGTCGTCTTGTAGAGGATGATGTTCTCATCTCACTAGATAAGCCTGCATGGCTAATTGCAGCGGCTAACTTTATGGTGTTTCTTCATGTTATTGGAAGCTACCAAGTTTTCAGTATGCCCGTGTTTGACCAGATTGAGCAATATTTGGTTGAAAATCGGGGTTTTACCCCTGGACGACCTTTGCGGATCATTGCTCGTAGTTTATATGTAGCCGCAGCAGGATTTGTTGCAATGTGCATTCCATTTTTTGGAGGCTTATTAGGATTATTTGGAGGCTTAGTATTCTCCTCTATATCATTTTATATGCCTTGTGTTATGTGGCTTATCACCCAAAAACCAAAAACATTTAGCTTTCATTGGCTTACTTCATGGAGAAACGCCGAAGCCCCCACAACTGAGCAGGACAAGTCATCGGCATTCATGTTGACAAGAACCACCTCCAGTGGGCAGCAAAACATGGATGCGGAACAGCCCCCAAGTCGACTTCAAGACTTGCTCATCATGTGGAAAGGAGCACACCCTCCCACATTGAAGCCTCAAGGGCACAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

489

Amino Acids

54.07

Weight (kDa)

8.31

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	47 - 428	1.2e-89	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	59 - 219	4.3e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71680 AT1G71680
fragaria_vesca	FvH4_5g33070
malus_domestica	MD08G1215100.v1.1 MD15G1398900.v1.1
prunus_persica	Prupe.1G546600_v2.0.a1
pyrus_communis	pycom15g35780
rosa_chinensis	RchiOBHm_Chr4g0414671 RchiOBHm_Chr7g0231241
rosa_laevigata	RLG00000001426 RLG00000008126
rosa_multiflora	Rmu_sc0001192.1_g000019 Rmu_sc0004571.1_g000017
rosa_roxburghii	Rroxscaffold_3G00229410 Rroxscaffold_5G00358480
rosa_rugosa	Rorug04G0129400 Rorug07G0265400
rosa_samantha	Rh4AG187700 Rh4CG200000 Rh7AG418900 Rh7BG394300 Rh7CG438600
rosa_wichuraiana	Rw4G016050 Rw7G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	1160
AccI	GTMKAC	2 cut(s)	20, 1393
AccII	CGCG	1 cut(s)	602
AciI	CCGC	5 cut(s)	600, 974, 1096, 1125, 1376
AclWI	GGATC	1 cut(s)	1106
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	3 cut(s)	195, 565, 783
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	6 cut(s)	350, 377, 378, 494, 1160, 1356
AgeI	ACCGGT	1 cut(s)	446
AgsI	TTSAA	9 cut(s)	463, 476, 571, 730, 788, 804, 1064, 1400, 1444
AjnI	CCWGG	2 cut(s)	238, 1081
AjuI	GAANNNNNNNTTGG	2 cut(s)	556, 588
AluBI	AGCT	6 cut(s)	422, 681, 791, 854, 1011, 1263
AluI	AGCT	6 cut(s)	422, 681, 791, 854, 1011, 1263
Alw21I	GWGCWC	1 cut(s)	1429
AlwI	GGATC	1 cut(s)	1106
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	4 cut(s)	355, 971, 1127, 1360
ApoI	RAATTY	3 cut(s)	195, 565, 783
AsiGI	ACCGGT	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	368
AsuC2I	CCSGG	2 cut(s)	321, 884
AsuHPI	GGTGA	5 cut(s)	86, 265, 436, 509, 1231
AvaII	GGWCC	1 cut(s)	368
BaeGI	GKGCMC	2 cut(s)	321, 1458
BanI	GGYRCC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	1429
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	367, 983, 1139, 1372
BccI	CCATC	1 cut(s)	826
BciT130I	CCWGG	2 cut(s)	240, 1083
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	2 cut(s)	321, 884
BfaI	CTAG	4 cut(s)	200, 350, 779, 947
BglI	GCCNNNNNGGC	2 cut(s)	961, 1453
BisI	GCNGC	7 cut(s)	356, 600, 972, 975, 1125, 1128, 1361
BlsI	GCNGC	7 cut(s)	357, 601, 973, 976, 1126, 1129, 1362
Bme1390I	CCNGG	4 cut(s)	240, 321, 884, 1083
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	3 cut(s)	119, 190, 370
BmrFI	CCNGG	4 cut(s)	240, 321, 884, 1083
BmrI	ACTGGG	2 cut(s)	386, 913
BmsI	GCATC	4 cut(s)	94, 116, 650, 1363
BmuI	ACTGGG	2 cut(s)	386, 913
BplI	GAGNNNNNCTC	2 cut(s)	576, 608
BpmI	CTGGAG	2 cut(s)	792, 1336
Bpu10I	CCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	1434
BpuMI	CCSGG	2 cut(s)	321, 884
BsaJI	CCNNGG	2 cut(s)	652, 1081
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	1176, 1206
Bsc4I	CCNNNNNNNGG	6 cut(s)	350, 377, 378, 494, 1160, 1356
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	3 cut(s)	381, 908, 1353
Bse3DI	GCAATG	4 cut(s)	222, 252, 1101, 1149
BseBI	CCWGG	2 cut(s)	240, 1083
BseDI	CCNNGG	2 cut(s)	652, 1081
BseGI	GGATG	3 cut(s)	519, 934, 1378
BseLI	CCNNNNNNNGG	6 cut(s)	350, 377, 378, 494, 1160, 1356
BseMI	GCAATG	4 cut(s)	222, 252, 1101, 1149
BseMII	CTCAG	3 cut(s)	29, 47, 1299
BseNI	ACTGG	3 cut(s)	381, 908, 1353
BseRI	GAGGAG	1 cut(s)	1189
BseSI	GKGCMC	2 cut(s)	321, 1458
BseXI	GCAGC	4 cut(s)	367, 983, 1139, 1372
Bsh1236I	CGCG	1 cut(s)	602
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	599
BshNI	GGYRCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	1429
BsiSI	CCGG	5 cut(s)	192, 321, 447, 488, 884
BslFI	GGGAC	1 cut(s)	866
BslI	CCNNNNNNNGG	6 cut(s)	350, 377, 378, 494, 1160, 1356
BsmFI	GGGAC	1 cut(s)	866
BsmI	GAATGC	3 cut(s)	145, 1149, 1328
BsnI	GGCC	1 cut(s)	599
Bsp1286I	GDGCHC	3 cut(s)	321, 1429, 1458
Bsp143I	GATC	5 cut(s)	270, 334, 603, 692, 1098
BspACI	CCGC	5 cut(s)	600, 974, 1096, 1125, 1376
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	3 cut(s)	28, 46, 1300
BspFNI	CGCG	1 cut(s)	602
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	3 cut(s)	119, 190, 370
BspPI	GGATC	1 cut(s)	1106
BspT107I	GGYRCC	1 cut(s)	188
BsrDI	GCAATG	4 cut(s)	222, 252, 1101, 1149
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	381, 908, 1353
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	2 cut(s)	652, 1081
BssMI	GATC	5 cut(s)	270, 334, 603, 692, 1098
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	2 cut(s)	240, 1083
Bst4CI	ACNGT	3 cut(s)	184, 250, 412
BstC8I	GCNNGC	3 cut(s)	92, 539, 957
BstDEI	CTNAG	4 cut(s)	15, 33, 1189, 1308
BstEII	GGTNACC	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	519, 934, 1378
BstFNI	CGCG	1 cut(s)	602
BstKTI	GATC	5 cut(s)	273, 337, 606, 695, 1101
BstMBI	GATC	5 cut(s)	270, 334, 603, 692, 1098
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	4 cut(s)	325, 638, 961, 1453
BstNI	CCWGG	2 cut(s)	240, 1083
BstPI	GGTNACC	1 cut(s)	204
BstSCI	CCNGG	4 cut(s)	238, 319, 882, 1081
BstSLI	GKGCMC	2 cut(s)	321, 1458
BstUI	CGCG	1 cut(s)	602
BstV1I	GCAGC	4 cut(s)	367, 983, 1139, 1372
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	3 cut(s)	519, 934, 1378
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	2 cut(s)	897, 1360
Cac8I	GCNNGC	3 cut(s)	92, 539, 957
CaiI	CAGNNNCTG	1 cut(s)	896
CciI	TCATGA	1 cut(s)	667
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	368
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	657
CspAI	ACCGGT	1 cut(s)	446
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	4 cut(s)	15, 33, 1189, 1308
DpnI	GATC	5 cut(s)	272, 336, 605, 694, 1100
DpnII	GATC	5 cut(s)	270, 334, 603, 692, 1098
DraI	TTTAAA	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	652
Eco32I	GATATC	2 cut(s)	552, 724
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	408
Eco91I	GGTNACC	1 cut(s)	204
EcoO65I	GGTNACC	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	238, 1081
EcoRV	GATATC	2 cut(s)	552, 724
EcoT14I	CCWWGG	1 cut(s)	652
EcoT22I	ATGCAT	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	652
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	866
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	2 cut(s)	20, 1393
Fnu4HI	GCNGC	7 cut(s)	356, 600, 972, 975, 1125, 1128, 1361
FokI	GGATG	3 cut(s)	506, 941, 1385
Fsp4HI	GCNGC	7 cut(s)	356, 600, 972, 975, 1125, 1128, 1361
FspBI	CTAG	4 cut(s)	200, 350, 779, 947
GluI	GCNGC	7 cut(s)	356, 600, 972, 975, 1125, 1128, 1361
GsuI	CTGGAG	2 cut(s)	792, 1336
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	5 cut(s)	192, 321, 447, 488, 884
HgaI	GACGC	1 cut(s)	430
HincII	GTYRAC	3 cut(s)	21, 1338, 1394
HindII	GTYRAC	3 cut(s)	21, 1338, 1394
HinfI	GANTC	3 cut(s)	235, 243, 330
HpaII	CCGG	5 cut(s)	192, 321, 447, 488, 884
HphI	GGTGA	5 cut(s)	86, 265, 436, 509, 1231
Hpy166II	GTNNAC	3 cut(s)	21, 1338, 1394
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	6 cut(s)	121, 668, 727, 779, 809, 1400
Hpy8I	GTNNAC	3 cut(s)	21, 1338, 1394
HpyAV	CCTTC	3 cut(s)	38, 286, 810
HpyCH4III	ACNGT	3 cut(s)	184, 250, 412
HpyF10VI	GCNNNNNNNGC	4 cut(s)	325, 638, 961, 1453
HpyF3I	CTNAG	4 cut(s)	15, 33, 1189, 1308
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	5 cut(s)	270, 334, 603, 692, 1098
LmnI	GCTCC	2 cut(s)	123, 1424
Lsp1109I	GCAGC	4 cut(s)	367, 983, 1139, 1372
LweI	GCATC	4 cut(s)	94, 116, 650, 1363
MaeI	CTAG	4 cut(s)	200, 350, 779, 947
MaeIII	GTNAC	5 cut(s)	172, 204, 219, 338, 442
MalI	GATC	5 cut(s)	272, 336, 605, 694, 1100
MboI	GATC	5 cut(s)	270, 334, 603, 692, 1098
MboII	GAAGA	3 cut(s)	475, 687, 986
MhlI	GDGCHC	3 cut(s)	321, 1429, 1458
MluCI	AATT	9 cut(s)	99, 195, 302, 542, 565, 571, 783, 795, 966
MnlI	CCTC	8 cut(s)	42, 919, 1157, 1178, 1210, 1360, 1443, 1458
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	2 cut(s)	578, 626
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	5 cut(s)	192, 321, 447, 488, 884
MspR9I	CCNGG	4 cut(s)	240, 321, 884, 1083
Mva1269I	GAATGC	3 cut(s)	145, 1149, 1328
MvaI	CCWGG	2 cut(s)	240, 1083
MvnI	CGCG	1 cut(s)	602
MwoI	GCNNNNNNNGC	4 cut(s)	325, 638, 961, 1453
NciI	CCSGG	2 cut(s)	321, 884
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	5 cut(s)	270, 334, 603, 692, 1098
NlaIV	GGNNCC	3 cut(s)	119, 190, 370
NmuCI	GTSAC	2 cut(s)	219, 442
NsiI	ATGCAT	1 cut(s)	109
PagI	TCATGA	1 cut(s)	667
PctI	GAATGC	3 cut(s)	145, 1149, 1328
PfeI	GAWTC	3 cut(s)	235, 243, 330
PflMI	CCANNNNNTGG	1 cut(s)	1160
PfoI	TCCNGGA	1 cut(s)	238
PinAI	ACCGGT	1 cut(s)	446
PkrI	GCNGC	7 cut(s)	357, 601, 973, 976, 1126, 1129, 1362
Ple19I	CGATCG	1 cut(s)	337
Psp6I	CCWGG	2 cut(s)	238, 1081
PspEI	GGTNACC	1 cut(s)	204
PspGI	CCWGG	2 cut(s)	238, 1081
PspN4I	GGNNCC	3 cut(s)	119, 190, 370
PspPI	GGNCC	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	896
PvuI	CGATCG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
RseI	CAYNNNNRTG	1 cut(s)	312
SalI	GTCGAC	2 cut(s)	19, 1392
SaqAI	TTAA	2 cut(s)	578, 626
SatI	GCNGC	7 cut(s)	356, 600, 972, 975, 1125, 1128, 1361
Sau3AI	GATC	5 cut(s)	270, 334, 603, 692, 1098
Sau96I	GGNCC	1 cut(s)	368
ScrFI	CCNGG	4 cut(s)	240, 321, 884, 1083
SduI	GDGCHC	3 cut(s)	321, 1429, 1458
SfaNI	GCATC	4 cut(s)	94, 116, 650, 1363
SgrAI	CRCCGGYG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	1449
SmoI	CTYRAG	1 cut(s)	1449
Sse9I	AATT	9 cut(s)	99, 195, 302, 542, 565, 571, 783, 795, 966
SsiI	CCGC	5 cut(s)	600, 974, 1096, 1125, 1376
SspI	AATATT	1 cut(s)	1055
SspMI	CTAG	4 cut(s)	200, 350, 779, 947
StyD4I	CCNGG	4 cut(s)	238, 319, 882, 1081
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	3 cut(s)	184, 250, 412
TaqI	TCGA	4 cut(s)	20, 333, 691, 1393
TasI	AATT	9 cut(s)	99, 195, 302, 542, 565, 571, 783, 795, 966
TauI	GCSGC	3 cut(s)	602, 977, 1127
TfiI	GAWTC	3 cut(s)	235, 243, 330
Tru1I	TTAA	2 cut(s)	578, 626
Tru9I	TTAA	2 cut(s)	578, 626
TscAI	CASTG	2 cut(s)	897, 1360
TseFI	GTSAC	2 cut(s)	219, 442
TseI	GCWGC	4 cut(s)	355, 971, 1127, 1360
Tsp45I	GTSAC	2 cut(s)	219, 442
TspDTI	ATGAA	7 cut(s)	66, 78, 508, 986, 1256, 1269, 1321
TspRI	CASTG	2 cut(s)	897, 1360
Van91I	CCANNNNNTGG	1 cut(s)	1160
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	3 cut(s)	195, 565, 783
XbaI	TCTAGA	1 cut(s)	778
XmiI	GTMKAC	2 cut(s)	20, 1393
XspI	CTAG	4 cut(s)	200, 350, 779, 947
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.