Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012630

Physical Location & Seq

Genomic Coordinates Forward (+)

26280419 .. 26281630

Gene Structure 1212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACAACAAACAAAGCAGGAAGCTCATCAGCATCAATCGAAGGTACCCTTGAGTGTTGCATGTGTGGGGATTTTGGCTTCTCCTACGAGCTTTTCCAATGCAAGGCCTGCCAGTTCAGATCCCAGCACAGGTACTGTAGCAATCTTTACCCAAAAGCAGAGTCGTACAGACTTTGCAATTGGTGCCTCACCCAGAAAGAAGAAACAAAAGAAAAGTCACAGAACTCTTCAAATTCTTCATCTTCATGTAAGAAAGACCAACCCCATCAAGAACAACTTCATCATAATCATGATTCCAAGGTCAACAAAGTGAAAAAGAATTCACCAAAAGCCAGCCATGATCATCATACATATGGTTCTGGTCTAAGAGGCAGCATGAAGCTTCAGCCAAGCGGCCCTATAAAGAAGCAGAGATCACTTGATCATCATCAGAATCAGGTCTCATCATCACCAAAATCTCCATCTCAGGCCAGAAAGAGGATCATCACAAATGGAGCAAACGAGGAGGCTGAGAAGATTAGGAGGACAAGATCAGAAGAGATATCAAACATAAACAGAATCAACAAGCATGGGATCACAAGGCAGGTGTTTAGGAACAAGGTGAGGAGGTACAAGCTTCTGGATGAGGTTTCAAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.33

Weight (kDa)

9.65

Isoelectric Point (pI)

64.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_pln	PF25054	20 - 62	2.2e-22	PHD-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012630)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35850 FvH4_5g35850
malus_domestica	MD08G1192700.v1.1 MD15G1381100.v1.1
prunus_persica	Prupe.1G527300_v2.0.a1 Prupe.1G527300_v2.0.a1
pyrus_communis	pycom08g16620 pycom15g34160
rosa_chinensis	RchiOBHm_Chr7g0237581
rosa_laevigata	RLG00000000993
rosa_multiflora	Rmu_ssc0000152.1_g000022
rosa_roxburghii	Rroxscaffold_3G00223980
rosa_rugosa	Rorug07G0305500
rosa_samantha	Rh7AG461800 Rh7BG432100 Rh7CG478900 Rh7DG448100
rosa_wichuraiana	Rw0G011790 Rw7G038220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	574
Acc36I	ACCTGC	1 cut(s)	574
Acc65I	GGTACC	1 cut(s)	44
AccB1I	GGYRCC	2 cut(s)	44, 183
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	3 cut(s)	114, 488, 581
AcsI	RAATTY	2 cut(s)	232, 319
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	4 cut(s)	46, 134, 167, 611
AfiI	CCNNNNNNNGG	3 cut(s)	103, 129, 477
AgsI	TTSAA	2 cut(s)	231, 633
AluBI	AGCT	4 cut(s)	24, 91, 382, 616
AluI	AGCT	4 cut(s)	24, 91, 382, 616
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	3 cut(s)	114, 488, 581
AlwNI	CAGNNNCTG	1 cut(s)	135
AoxI	GGCC	3 cut(s)	105, 394, 468
ApeKI	GCWGC	1 cut(s)	372
ApoI	RAATTY	2 cut(s)	232, 319
ArsI	GACNNNNNNTTYG	4 cut(s)	146, 178, 200, 232
Asp700I	GAANNNNTTC	1 cut(s)	276
Asp718I	GGTACC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	4 cut(s)	181, 315, 441, 613
BanI	GGYRCC	2 cut(s)	44, 183
BbvI	GCAGC	1 cut(s)	384
BccI	CCATC	2 cut(s)	273, 469
BclI	TGATCA	2 cut(s)	340, 421
BcoDI	GTCTC	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	574
BisI	GCNGC	2 cut(s)	373, 394
BlsI	GCNGC	2 cut(s)	374, 395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	2 cut(s)	46, 185
BmsI	GCATC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 129, 477
Bse1I	ACTGG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	3 cut(s)	103, 129, 477
BseMII	CTCAG	2 cut(s)	479, 501
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	2 cut(s)	518, 619
BseXI	GCAGC	1 cut(s)	384
BseYI	CCCAGC	1 cut(s)	123
BshFI	GGCC	3 cut(s)	107, 396, 470
BshNI	GGYRCC	2 cut(s)	44, 183
BslI	CCNNNNNNNGG	3 cut(s)	103, 129, 477
BsmAI	GTCTC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	107, 396, 470
Bso31I	GGTCTC	1 cut(s)	445
Bsp143I	GATC	7 cut(s)	119, 340, 413, 421, 480, 530, 573
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	3 cut(s)	107, 396, 470
BspCNI	CTCAG	2 cut(s)	478, 502
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	46, 185
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	3 cut(s)	114, 488, 581
BspT107I	GGYRCC	2 cut(s)	44, 183
BspTNI	GGTCTC	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	7 cut(s)	119, 340, 413, 421, 480, 530, 573
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	2 cut(s)	232, 531
BstAPI	GCANNNNNTGC	2 cut(s)	108, 183
BstC8I	GCNNGC	2 cut(s)	109, 334
BstDEI	CTNAG	3 cut(s)	365, 465, 510
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	7 cut(s)	122, 343, 416, 424, 483, 533, 576
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	7 cut(s)	119, 340, 413, 421, 480, 530, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 183
BstNSI	RCATGY	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	107, 396, 470
BtsCI	GGATG	1 cut(s)	628
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	2 cut(s)	109, 334
CaiI	CAGNNNCTG	1 cut(s)	135
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	4 cut(s)	45, 133, 166, 610
CviAII	CATG	6 cut(s)	61, 246, 290, 338, 376, 569
CviQI	GTAC	4 cut(s)	45, 133, 166, 610
DdeI	CTNAG	3 cut(s)	365, 465, 510
DpnI	GATC	7 cut(s)	121, 342, 415, 423, 482, 532, 575
DpnII	GATC	7 cut(s)	119, 340, 413, 421, 480, 530, 573
Eam1104I	CTCTTC	2 cut(s)	232, 531
EarI	CTCTTC	2 cut(s)	232, 531
Eco130I	CCWWGG	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	445
Eco32I	GATATC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	319
EcoRV	GATATC	1 cut(s)	543
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	6 cut(s)	64, 249, 293, 341, 379, 572
FalI	AAGNNNNNCTT	4 cut(s)	33, 65, 261, 293
FatI	CATG	6 cut(s)	60, 245, 289, 337, 375, 568
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	2 cut(s)	340, 421
Fnu4HI	GCNGC	2 cut(s)	373, 394
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	2 cut(s)	373, 394
GluI	GCNGC	2 cut(s)	373, 394
GsaI	CCCAGC	1 cut(s)	127
HaeIII	GGCC	3 cut(s)	107, 396, 470
Hin1II	CATG	6 cut(s)	64, 249, 293, 341, 379, 572
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	380, 614
HinfI	GANTC	4 cut(s)	161, 293, 433, 558
HphI	GGTGA	4 cut(s)	181, 315, 441, 613
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	119, 432, 535
Hpy188III	TCNNGA	3 cut(s)	269, 290, 620
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	60, 102, 177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 183
HpyF3I	CTNAG	3 cut(s)	365, 465, 510
Hsp92II	CATG	6 cut(s)	64, 249, 293, 341, 379, 572
KpnI	GGTACC	1 cut(s)	48
Ksp22I	TGATCA	2 cut(s)	340, 421
Kzo9I	GATC	7 cut(s)	119, 340, 413, 421, 480, 530, 573
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	7 cut(s)	121, 342, 415, 423, 482, 532, 575
MboI	GATC	7 cut(s)	119, 340, 413, 421, 480, 530, 573
MboII	GAAGA	6 cut(s)	212, 219, 228, 234, 526, 548
MfeI	CAATTG	1 cut(s)	178
MflI	RGATCY	1 cut(s)	119
MluCI	AATT	3 cut(s)	178, 232, 319
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	9 cut(s)	197, 362, 471, 496, 499, 516, 597, 600, 619
MroXI	GAANNNNTTC	1 cut(s)	276
MslI	CAYNNNNRTG	3 cut(s)	244, 288, 351
MunI	CAATTG	1 cut(s)	178
MwoI	GCNNNNNNNGC	2 cut(s)	108, 183
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	7 cut(s)	119, 340, 413, 421, 480, 530, 573
NlaIII	CATG	6 cut(s)	64, 249, 293, 341, 379, 572
NlaIV	GGNNCC	2 cut(s)	46, 185
NmuCI	GTSAC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	64
PagI	TCATGA	1 cut(s)	289
PaqCI	CACCTGC	1 cut(s)	574
PceI	AGGCCT	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	293, 433, 558
PkrI	GCNGC	2 cut(s)	374, 395
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	46, 185
PspPI	GGNCC	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	119
RsaI	GTAC	4 cut(s)	46, 134, 167, 611
RsaNI	GTAC	4 cut(s)	45, 133, 166, 610
RseI	CAYNNNNRTG	3 cut(s)	244, 288, 351
SatI	GCNGC	2 cut(s)	373, 394
Sau3AI	GATC	7 cut(s)	119, 340, 413, 421, 480, 530, 573
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	1 cut(s)	170
SfaNI	GCATC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	3 cut(s)	244, 288, 351
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	178, 232, 319
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	1 cut(s)	393
StuI	AGGCCT	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	39
TasI	AATT	3 cut(s)	178, 232, 319
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	3 cut(s)	293, 433, 558
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	1 cut(s)	372
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	4 cut(s)	228, 234, 269, 392
XapI	RAATTY	2 cut(s)	232, 319
XceI	RCATGY	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.