RLG00000000993

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012630
Physical Location & Seq
Reverse (-)
8946966 .. 8948391
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000993

Sequence Viewer

Length: 858 bp
ATGACACAAAAAATCTCATGGAAAGCTTCTCGAATCTGCAATACTACTATCGAAGCCCAAACGCCACCCCATGGTCCCTCGAAACACCACTACCTTCACAAGTCACTCCAAAGAGGGCGGAAAAAAAAAGAGCCCATCATCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCATGAGATTCGAAGATCGAAACAGAGCAAGAAGCAAGCAAGCAATATGACAACAAACAAAGCAGCAAGCGCAGCACCAATTGAAGGTACCCATGAGTGTTGCATGTGTGGGGATTTTGGCTTCTCCTACGAGCTTTTCCAATGCAAGGCCTGCCAGTTCAGATCTCAGCACAGGTACTGTAGCAATCTTTACCCAAAAGCAGAGTCGTACAGAATCTGCAATTGGTGCCTCACCCAGAAAGAAGAAGCAAAAGAAAAGTCGCAGAATTCTTCAAATTCTTCATCTTCATGCAAAAAAGACCAATCCCATCAAGAAAATCTTCATCAGAATCATGATTCCAAGGTCAACAGAATAAAAAAGAATTCACCGAAAGCCAGTCATGATCATCATACAGATGGTTCTGGTCTAAGAGGCAGCATGAAGCTTCAGCCAAGTGGCCCTATAAAGAAGCAGAAATCACTTGATCATCATCATAATCAGGTCTCATCATCACCAAGATCTCCGTCTCTGGTCAGAAAAAGGATCATCACAAATGGAGCAAAGGAAGAGGCTGAGAAGATTACTAGGACAAGATCAGAAGAGATATCAAACATAAGCAGAATCAATAATCATGGGATCACAAGGCAGGTGTTTAGGAGTAGGGTGAGGAGGTACAAGCTTCTTGATGAAGTTTCAAGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.48

Weight (kDa)

9.94

Isoelectric Point (pI)

61.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 92 - 134 2.5e-22 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 790
Acc36I ACCTGC 1 cut(s) 790
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 2 cut(s) 260, 399
AccB7I CCANNNNNTGG 1 cut(s) 71
AciI CCGC 1 cut(s) 118
AclWI GGATC 2 cut(s) 704, 797
AcsI RAATTY 3 cut(s) 439, 448, 535
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 4 cut(s) 262, 350, 383, 827
AfiI CCNNNNNNNGG 3 cut(s) 71, 257, 319
AgsI TTSAA 3 cut(s) 257, 447, 849
AjuI GAANNNNNNNTTGG 2 cut(s) 379, 411
AluBI AGCT 4 cut(s) 26, 307, 598, 832
AluI AGCT 4 cut(s) 26, 307, 598, 832
Alw26I GTCTC 2 cut(s) 661, 684
AlwI GGATC 2 cut(s) 704, 797
AlwNI CAGNNNCTG 2 cut(s) 351, 390
AoxI GGCC 2 cut(s) 321, 610
ApeKI GCWGC 3 cut(s) 236, 245, 588
ApoI RAATTY 3 cut(s) 439, 448, 535
ArsI GACNNNNNNTTYG 4 cut(s) 362, 394, 416, 448
Asp700I GAANNNNTTC 1 cut(s) 492
Asp718I GGTACC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 74, 611
AsuHPI GGTGA 4 cut(s) 397, 531, 657, 829
AsuII TTCGAA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 74
BanI GGYRCC 2 cut(s) 260, 399
BanII GRGCYC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 248, 257, 600
BccI CCATC 3 cut(s) 143, 489, 563
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BclI TGATCA 2 cut(s) 556, 637
BcoDI GTCTC 2 cut(s) 661, 684
BfaI CTAG 1 cut(s) 738
BfmI CTRYAG 1 cut(s) 352
BfuAI ACCTGC 1 cut(s) 790
BglII AGATCT 2 cut(s) 335, 671
BisI GCNGC 3 cut(s) 237, 246, 589
BlsI GCNGC 3 cut(s) 238, 247, 590
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 74, 611
BmiI GGNNCC 3 cut(s) 76, 262, 401
Bpu14I TTCGAA 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 661
BsaJI CCNNGG 2 cut(s) 70, 513
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 257, 319
Bse1I ACTGG 2 cut(s) 328, 549
Bse8I GATNNNNATC 1 cut(s) 642
BseDI CCNNGG 2 cut(s) 70, 513
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 3 cut(s) 71, 257, 319
BseMII CTCAG 2 cut(s) 353, 717
BseNI ACTGG 2 cut(s) 328, 549
BseRI GAGGAG 1 cut(s) 835
BseXI GCAGC 3 cut(s) 248, 257, 600
BshFI GGCC 2 cut(s) 323, 612
BshNI GGYRCC 2 cut(s) 260, 399
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 3 cut(s) 71, 257, 319
BsmAI GTCTC 2 cut(s) 661, 684
BsmBI CGTCTC 1 cut(s) 684
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 2 cut(s) 323, 612
Bso31I GGTCTC 1 cut(s) 661
Bsp119I TTCGAA 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 8 cut(s) 188, 335, 556, 637, 671, 696, 746, 789
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 1 cut(s) 118
BspANI GGCC 2 cut(s) 323, 612
BspCNI CTCAG 2 cut(s) 352, 718
BspHI TCATGA 2 cut(s) 505, 553
BspLI GGNNCC 3 cut(s) 76, 262, 401
BspMI ACCTGC 1 cut(s) 790
BspPI GGATC 2 cut(s) 704, 797
BspT104I TTCGAA 1 cut(s) 184
BspT107I GGYRCC 2 cut(s) 260, 399
BspTNI GGTCTC 1 cut(s) 661
BsrI ACTGG 2 cut(s) 328, 549
BssECI CCNNGG 2 cut(s) 70, 513
BssMI GATC 8 cut(s) 188, 335, 556, 637, 671, 696, 746, 789
BssT1I CCWWGG 2 cut(s) 70, 513
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 2 cut(s) 714, 747
BstAPI GCANNNNNTGC 2 cut(s) 324, 399
BstBI TTCGAA 1 cut(s) 184
BstC8I GCNNGC 4 cut(s) 210, 214, 241, 325
BstDEI CTNAG 3 cut(s) 339, 581, 726
BstDSI CCRYGG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 8 cut(s) 191, 338, 559, 640, 674, 699, 749, 792
BstMAI GTCTC 2 cut(s) 661, 684
BstMBI GATC 8 cut(s) 188, 335, 556, 637, 671, 696, 746, 789
BstMWI GCNNNNNNNGC 4 cut(s) 242, 245, 324, 399
BstNSI RCATGY 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 352
BstV1I GCAGC 3 cut(s) 248, 257, 600
BstX2I RGATCY 2 cut(s) 335, 671
BstYI RGATCY 2 cut(s) 335, 671
BsuRI GGCC 2 cut(s) 323, 612
BtgI CCRYGG 1 cut(s) 70
BveI ACCTGC 1 cut(s) 790
Cac8I GCNNGC 4 cut(s) 210, 214, 241, 325
CaiI CAGNNNCTG 2 cut(s) 351, 390
CciI TCATGA 2 cut(s) 505, 553
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 74, 611
Csp6I GTAC 4 cut(s) 261, 349, 382, 826
CviQI GTAC 4 cut(s) 261, 349, 382, 826
DdeI CTNAG 3 cut(s) 339, 581, 726
DpnI GATC 8 cut(s) 190, 337, 558, 639, 673, 698, 748, 791
DpnII GATC 8 cut(s) 188, 335, 556, 637, 671, 696, 746, 789
Eam1104I CTCTTC 2 cut(s) 714, 747
EarI CTCTTC 2 cut(s) 714, 747
EciI GGCGGA 1 cut(s) 133
Eco130I CCWWGG 2 cut(s) 70, 513
Eco147I AGGCCT 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 661
Eco32I GATATC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 584
EcoRI GAATTC 2 cut(s) 439, 535
EcoRV GATATC 1 cut(s) 759
EcoT14I CCWWGG 2 cut(s) 70, 513
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 2 cut(s) 70, 513
Esp3I CGTCTC 1 cut(s) 684
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FaqI GGGAC 1 cut(s) 60
FbaI TGATCA 2 cut(s) 556, 637
Fnu4HI GCNGC 3 cut(s) 237, 246, 589
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 237, 246, 589
FspBI CTAG 1 cut(s) 738
GlaI GCGC 1 cut(s) 244
GluI GCNGC 3 cut(s) 237, 246, 589
HaeIII GGCC 2 cut(s) 323, 612
HhaI GCGC 1 cut(s) 245
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 3 cut(s) 24, 596, 830
HinfI GANTC 7 cut(s) 33, 181, 377, 387, 502, 509, 774
HphI GGTGA 4 cut(s) 397, 531, 657, 829
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 4 cut(s) 335, 501, 689, 751
Hpy188III TCNNGA 5 cut(s) 30, 485, 506, 554, 836
Hpy8I GTNNAC 1 cut(s) 520
HpyAV CCTTC 2 cut(s) 104, 251
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 6 cut(s) 39, 175, 276, 318, 393, 465
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 245, 324, 399
HpyF3I CTNAG 3 cut(s) 339, 581, 726
HspAI GCGC 1 cut(s) 243
KpnI GGTACC 1 cut(s) 264
Ksp22I TGATCA 2 cut(s) 556, 637
Kzo9I GATC 8 cut(s) 188, 335, 556, 637, 671, 696, 746, 789
LmnI GCTCC 1 cut(s) 710
LpnPI CCDG 9 cut(s) 331, 337, 341, 422, 561, 562, 638, 668, 785
Lsp1109I GCAGC 3 cut(s) 248, 257, 600
MaeI CTAG 1 cut(s) 738
MaeIII GTNAC 1 cut(s) 102
MalI GATC 8 cut(s) 190, 337, 558, 639, 673, 698, 748, 791
MboI GATC 8 cut(s) 188, 335, 556, 637, 671, 696, 746, 789
MboII GAAGA 9 cut(s) 198, 428, 435, 444, 450, 485, 731, 742, 764
MfeI CAATTG 2 cut(s) 252, 394
MflI RGATCY 2 cut(s) 335, 671
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 5 cut(s) 252, 394, 439, 448, 535
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 7 cut(s) 88, 107, 413, 578, 715, 813, 816
MroXI GAANNNNTTC 1 cut(s) 492
MslI CAYNNNNRTG 2 cut(s) 460, 567
MunI CAATTG 2 cut(s) 252, 394
MwoI GCNNNNNNNGC 4 cut(s) 242, 245, 324, 399
NcoI CCATGG 1 cut(s) 70
NdeII GATC 8 cut(s) 188, 335, 556, 637, 671, 696, 746, 789
NlaIV GGNNCC 3 cut(s) 76, 262, 401
NmuCI GTSAC 1 cut(s) 102
NspI RCATGY 1 cut(s) 280
NspV TTCGAA 1 cut(s) 184
PagI TCATGA 2 cut(s) 505, 553
PaqCI CACCTGC 1 cut(s) 790
PceI AGGCCT 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 6 cut(s) 33, 181, 387, 502, 509, 774
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 3 cut(s) 238, 247, 590
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
PspN4I GGNNCC 3 cut(s) 76, 262, 401
PspPI GGNCC 2 cut(s) 74, 611
PstNI CAGNNNCTG 2 cut(s) 351, 390
PsuI RGATCY 2 cut(s) 335, 671
RsaI GTAC 4 cut(s) 262, 350, 383, 827
RsaNI GTAC 4 cut(s) 261, 349, 382, 826
RseI CAYNNNNRTG 2 cut(s) 460, 567
SatI GCNGC 3 cut(s) 237, 246, 589
Sau3AI GATC 8 cut(s) 188, 335, 556, 637, 671, 696, 746, 789
Sau96I GGNCC 2 cut(s) 74, 611
SchI GAGTC 1 cut(s) 386
SduI GDGCHC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 352
SfuI TTCGAA 1 cut(s) 184
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 2 cut(s) 460, 567
Sse9I AATT 5 cut(s) 252, 394, 439, 448, 535
SseBI AGGCCT 1 cut(s) 323
SsiI CCGC 1 cut(s) 118
SspMI CTAG 1 cut(s) 738
StuI AGGCCT 1 cut(s) 323
StyI CCWWGG 2 cut(s) 70, 513
TaaI ACNGT 1 cut(s) 353
TaqI TCGA 5 cut(s) 31, 51, 80, 184, 191
TasI AATT 5 cut(s) 252, 394, 439, 448, 535
TfiI GAWTC 6 cut(s) 33, 181, 387, 502, 509, 774
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 3 cut(s) 236, 245, 588
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 5 cut(s) 444, 450, 485, 608, 855
TspGWI ACGGA 1 cut(s) 666
Van91I CCANNNNNTGG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 74
XapI RAATTY 3 cut(s) 439, 448, 535
XceI RCATGY 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.