Rh7DG448100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012630
Physical Location & Seq
Forward (+)
63601144 .. 63602536
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG448100.1

Sequence Viewer

Length: 639 bp
ATGACAACAAACAAAGCAGGAAGCGCAGCATCAATTGAAGGTACCCATGAGTGTTGCATGTGTGGGGATTTTGGCTTCTCCTACGAGCTTTTCCAATGCAAGGCCTGCAAGTTCAGATCTCAGCACAGGTACTGTAGCAATCTTTACCCAAAAGCAGTGTCCTACAGAATCTGCAATTGGTGCCTCACCCAGAAAGAAGAAACAAAAGAAAAGTCGCAGAATTCTTCAAATTCTTCATCTTCATGCAAAAAAGACCAATCCCATCAAGAACATCTTCATCAGAATCATGATTCCAAGGTCAACAGAATAAAAAAGAATTCACCGAAAGCCAGTCATGATCATCATACACATGGTTCTGGTCTAAGAGGCAGCATGAAGCTTCAGCCAAGTGGCCCTATAAAGAAGCAGAAATCACTTGATCATCATCATAATCAGGTCTCATCATCACCAAGATCTCCGTCTCTGATCAGAAAAAGGATCATCACAAATGGAGCAAAGGAAGAGGCTGAGAAGATTAGGAGGACAAGATCAGAAGAGATATCAAACATAAACAGAATCAATAATCATGGGATCACAAGGCAGGTGTTTAGGAGTAGGGTTAGGAGGTACAAGCTTCTGGATGAAGTTTCAAGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.26

Weight (kDa)

9.8

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 19 - 61 7e-22 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 571
Acc36I ACCTGC 1 cut(s) 571
Acc65I GGTACC 1 cut(s) 41
AccB1I GGYRCC 2 cut(s) 41, 180
AclWI GGATC 2 cut(s) 485, 578
AcsI RAATTY 3 cut(s) 220, 229, 316
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 3 cut(s) 43, 131, 608
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 3 cut(s) 38, 228, 630
AjuI GAANNNNNNNTTGG 2 cut(s) 160, 192
AluBI AGCT 3 cut(s) 88, 379, 613
AluI AGCT 3 cut(s) 88, 379, 613
Alw26I GTCTC 2 cut(s) 442, 465
AlwI GGATC 2 cut(s) 485, 578
AlwNI CAGNNNCTG 2 cut(s) 132, 171
AoxI GGCC 2 cut(s) 102, 391
ApeKI GCWGC 2 cut(s) 26, 369
ApoI RAATTY 3 cut(s) 220, 229, 316
ArsI GACNNNNNNTTYG 4 cut(s) 143, 175, 197, 229
Asp700I GAANNNNTTC 1 cut(s) 273
Asp718I GGTACC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 3 cut(s) 178, 312, 438
BanI GGYRCC 2 cut(s) 41, 180
BbvI GCAGC 2 cut(s) 38, 381
BccI CCATC 1 cut(s) 270
BclI TGATCA 3 cut(s) 337, 418, 465
BcoDI GTCTC 2 cut(s) 442, 465
BfmI CTRYAG 2 cut(s) 133, 163
BfuAI ACCTGC 1 cut(s) 571
BglII AGATCT 2 cut(s) 116, 452
BisI GCNGC 2 cut(s) 27, 370
BlsI GCNGC 2 cut(s) 28, 371
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 2 cut(s) 43, 182
BmsI GCATC 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 625
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 134, 498
BseNI ACTGG 1 cut(s) 330
BseXI GCAGC 2 cut(s) 38, 381
BshFI GGCC 2 cut(s) 104, 393
BshNI GGYRCC 2 cut(s) 41, 180
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 2 cut(s) 442, 465
BsmBI CGTCTC 1 cut(s) 465
BsnI GGCC 2 cut(s) 104, 393
Bso31I GGTCTC 1 cut(s) 442
Bsp143I GATC 8 cut(s) 116, 337, 418, 452, 465, 477, 527, 570
BspANI GGCC 2 cut(s) 104, 393
BspCNI CTCAG 2 cut(s) 133, 499
BspHI TCATGA 2 cut(s) 286, 334
BspLI GGNNCC 2 cut(s) 43, 182
BspMI ACCTGC 1 cut(s) 571
BspPI GGATC 2 cut(s) 485, 578
BspT107I GGYRCC 2 cut(s) 41, 180
BspTNI GGTCTC 1 cut(s) 442
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 8 cut(s) 116, 337, 418, 452, 465, 477, 527, 570
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 2 cut(s) 495, 528
BstAPI GCANNNNNTGC 2 cut(s) 105, 180
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 120, 362, 507
BstF5I GGATG 1 cut(s) 625
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 8 cut(s) 119, 340, 421, 455, 468, 480, 530, 573
BstMAI GTCTC 2 cut(s) 442, 465
BstMBI GATC 8 cut(s) 116, 337, 418, 452, 465, 477, 527, 570
BstMWI GCNNNNNNNGC 3 cut(s) 23, 105, 180
BstNSI RCATGY 1 cut(s) 61
BstSFI CTRYAG 2 cut(s) 133, 163
BstV1I GCAGC 2 cut(s) 38, 381
BstX2I RGATCY 2 cut(s) 116, 452
BstYI RGATCY 2 cut(s) 116, 452
BsuRI GGCC 2 cut(s) 104, 393
BtsCI GGATG 1 cut(s) 625
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 2 cut(s) 132, 171
CciI TCATGA 2 cut(s) 286, 334
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 3 cut(s) 42, 130, 607
CviAII CATG 8 cut(s) 47, 58, 243, 287, 335, 350, 373, 566
CviJI RGCY 9 cut(s) 75, 88, 104, 329, 379, 385, 393, 506, 613
CviKI_1 RGCY 9 cut(s) 75, 88, 104, 329, 379, 385, 393, 506, 613
CviQI GTAC 3 cut(s) 42, 130, 607
DdeI CTNAG 3 cut(s) 120, 362, 507
DpnI GATC 8 cut(s) 118, 339, 420, 454, 467, 479, 529, 572
DpnII GATC 8 cut(s) 116, 337, 418, 452, 465, 477, 527, 570
Eam1104I CTCTTC 2 cut(s) 495, 528
EarI CTCTTC 2 cut(s) 495, 528
Eco130I CCWWGG 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 442
Eco32I GATATC 1 cut(s) 540
Eco57I CTGAAG 1 cut(s) 365
EcoRI GAATTC 2 cut(s) 220, 316
EcoRV GATATC 1 cut(s) 540
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 465
FaeI CATG 8 cut(s) 50, 61, 246, 290, 338, 353, 376, 569
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 8 cut(s) 46, 57, 242, 286, 334, 349, 372, 565
FbaI TGATCA 3 cut(s) 337, 418, 465
Fnu4HI GCNGC 2 cut(s) 27, 370
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 2 cut(s) 27, 370
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 27, 370
HaeIII GGCC 2 cut(s) 104, 393
HhaI GCGC 1 cut(s) 26
Hin1II CATG 8 cut(s) 50, 61, 246, 290, 338, 353, 376, 569
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 2 cut(s) 377, 611
HinfI GANTC 4 cut(s) 168, 283, 290, 555
HphI GGTGA 3 cut(s) 178, 312, 438
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 5 cut(s) 116, 282, 465, 470, 532
Hpy188III TCNNGA 4 cut(s) 266, 287, 335, 617
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 5 cut(s) 57, 99, 108, 174, 246
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 105, 180
HpyF3I CTNAG 3 cut(s) 120, 362, 507
Hsp92II CATG 8 cut(s) 50, 61, 246, 290, 338, 353, 376, 569
HspAI GCGC 1 cut(s) 24
KpnI GGTACC 1 cut(s) 45
Ksp22I TGATCA 3 cut(s) 337, 418, 465
Kzo9I GATC 8 cut(s) 116, 337, 418, 452, 465, 477, 527, 570
LmnI GCTCC 1 cut(s) 491
LpnPI CCDG 9 cut(s) 3, 112, 118, 203, 342, 343, 419, 566, 602
Lsp1109I GCAGC 2 cut(s) 38, 381
LweI GCATC 1 cut(s) 38
MalI GATC 8 cut(s) 118, 339, 420, 454, 467, 479, 529, 572
MboI GATC 8 cut(s) 116, 337, 418, 452, 465, 477, 527, 570
MboII GAAGA 8 cut(s) 209, 216, 225, 231, 266, 512, 523, 545
MfeI CAATTG 2 cut(s) 33, 175
MflI RGATCY 2 cut(s) 116, 452
MluCI AATT 5 cut(s) 33, 175, 220, 229, 316
MnlI CCTC 5 cut(s) 194, 359, 496, 513, 597
MroXI GAANNNNTTC 1 cut(s) 273
MslI CAYNNNNRTG 2 cut(s) 241, 348
MunI CAATTG 2 cut(s) 33, 175
MwoI GCNNNNNNNGC 3 cut(s) 23, 105, 180
NdeII GATC 8 cut(s) 116, 337, 418, 452, 465, 477, 527, 570
NlaIII CATG 8 cut(s) 50, 61, 246, 290, 338, 353, 376, 569
NlaIV GGNNCC 2 cut(s) 43, 182
NspI RCATGY 1 cut(s) 61
PagI TCATGA 2 cut(s) 286, 334
PaqCI CACCTGC 1 cut(s) 571
PceI AGGCCT 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 4 cut(s) 168, 283, 290, 555
PkrI GCNGC 2 cut(s) 28, 371
PspN4I GGNNCC 2 cut(s) 43, 182
PspPI GGNCC 1 cut(s) 392
PstNI CAGNNNCTG 2 cut(s) 132, 171
PsuI RGATCY 2 cut(s) 116, 452
RsaI GTAC 3 cut(s) 43, 131, 608
RsaNI GTAC 3 cut(s) 42, 130, 607
RseI CAYNNNNRTG 2 cut(s) 241, 348
SatI GCNGC 2 cut(s) 27, 370
Sau3AI GATC 8 cut(s) 116, 337, 418, 452, 465, 477, 527, 570
Sau96I GGNCC 1 cut(s) 392
SetI ASST 9 cut(s) 43, 90, 131, 300, 381, 438, 585, 608, 615
SfaNI GCATC 1 cut(s) 38
SfcI CTRYAG 2 cut(s) 133, 163
SmiMI CAYNNNNRTG 2 cut(s) 241, 348
Sse9I AATT 5 cut(s) 33, 175, 220, 229, 316
SseBI AGGCCT 1 cut(s) 104
StuI AGGCCT 1 cut(s) 104
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 134
TasI AATT 5 cut(s) 33, 175, 220, 229, 316
TfiI GAWTC 4 cut(s) 168, 283, 290, 555
TscAI CASTG 1 cut(s) 162
TseI GCWGC 2 cut(s) 26, 369
TspDTI ATGAA 5 cut(s) 225, 231, 266, 389, 636
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 1 cut(s) 162
XapI RAATTY 3 cut(s) 220, 229, 316
XceI RCATGY 1 cut(s) 61
XmnI GAANNNNTTC 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.