Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000152.1

Orthogroup ID

OG0012630

Physical Location & Seq

Genomic Coordinates Forward (+)

109006 .. 109744

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000152.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgacaacaaacaaagctggaagcgcagcatcaattgaaggtacccatgagtgttgcatgtgtggggattttggcttctcctacgagcttttccaatgcaaggcctgccagttcagatcgcagcacaggtactgtagcaatctttacccaaaagcagagtcctacagaatctgcaattggtgcctcacccagaaagaagaaacaaaagaaaagtcgcagaattcttcaaattcttcatcttcgtgcaaaaaagaccaatcccatcaagaacatcttcatcagaatcatgattccaaggtcaacagaataaaaaagaattcaccgaaagccagtcatgatcatcatacagatggttctggtctaagaggcagcatgaagcttcagccaagtggccctataaagaagcagaaatcacttgatcatcatcataatcaggtctcatcatcaccaagatctccgtctctggtcagaaaaaggatcatcacaaatggagcaaaggaagaggctgagaatattaggaggacgagatcagaagagatatcaaacataaacagaatcaataatcatgggatcacaaggcaggtgtttaggagtagggtgaggaggtacaagcttctggatgaagtttcaagtcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

24.24

Weight (kDa)

9.59

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012630)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35850 FvH4_5g35850
malus_domestica	MD08G1192700.v1.1 MD15G1381100.v1.1
prunus_persica	Prupe.1G527300_v2.0.a1 Prupe.1G527300_v2.0.a1
pyrus_communis	pycom08g16620 pycom15g34160
rosa_chinensis	RchiOBHm_Chr7g0237581
rosa_laevigata	RLG00000000993
rosa_multiflora	Rmu_ssc0000152.1_g000022
rosa_roxburghii	Rroxscaffold_3G00223980
rosa_rugosa	Rorug07G0305500
rosa_samantha	Rh7AG461800 Rh7BG432100 Rh7CG478900 Rh7DG448100
rosa_wichuraiana	Rw0G011790 Rw7G038220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	571
Acc36I	ACCTGC	1 cut(s)	571
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	2 cut(s)	41, 180
AclWI	GGATC	2 cut(s)	485, 578
AcsI	RAATTY	3 cut(s)	220, 229, 316
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	3 cut(s)	43, 131, 608
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	38, 228, 630
AjuI	GAANNNNNNNTTGG	2 cut(s)	160, 192
AluBI	AGCT	4 cut(s)	17, 88, 379, 613
AluI	AGCT	4 cut(s)	17, 88, 379, 613
Alw26I	GTCTC	2 cut(s)	442, 465
AlwI	GGATC	2 cut(s)	485, 578
AlwNI	CAGNNNCTG	2 cut(s)	132, 171
AoxI	GGCC	2 cut(s)	102, 391
ApeKI	GCWGC	3 cut(s)	26, 121, 369
ApoI	RAATTY	3 cut(s)	220, 229, 316
ArsI	GACNNNNNNTTYG	4 cut(s)	143, 175, 197, 229
Asp700I	GAANNNNTTC	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	4 cut(s)	178, 312, 438, 610
BanI	GGYRCC	2 cut(s)	41, 180
BbvI	GCAGC	3 cut(s)	38, 133, 381
BccI	CCATC	2 cut(s)	270, 344
BclI	TGATCA	2 cut(s)	337, 418
BcoDI	GTCTC	2 cut(s)	442, 465
BfmI	CTRYAG	2 cut(s)	133, 163
BfuAI	ACCTGC	1 cut(s)	571
BglII	AGATCT	1 cut(s)	452
BisI	GCNGC	3 cut(s)	27, 122, 370
BlsI	GCNGC	3 cut(s)	28, 123, 371
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	43, 182
BmsI	GCATC	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	109, 330
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	625
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	109, 330
BseRI	GAGGAG	1 cut(s)	616
BseXI	GCAGC	3 cut(s)	38, 133, 381
BshFI	GGCC	2 cut(s)	104, 393
BshNI	GGYRCC	2 cut(s)	41, 180
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	2 cut(s)	442, 465
BsmBI	CGTCTC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	104, 393
Bso31I	GGTCTC	1 cut(s)	442
Bsp143I	GATC	7 cut(s)	116, 337, 418, 452, 477, 527, 570
BspANI	GGCC	2 cut(s)	104, 393
BspCNI	CTCAG	1 cut(s)	499
BspHI	TCATGA	2 cut(s)	286, 334
BspLI	GGNNCC	2 cut(s)	43, 182
BspMI	ACCTGC	1 cut(s)	571
BspPI	GGATC	2 cut(s)	485, 578
BspT107I	GGYRCC	2 cut(s)	41, 180
BspTNI	GGTCTC	1 cut(s)	442
BsrI	ACTGG	2 cut(s)	109, 330
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	7 cut(s)	116, 337, 418, 452, 477, 527, 570
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	2 cut(s)	495, 528
BstAPI	GCANNNNNTGC	2 cut(s)	105, 180
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	362, 507
BstF5I	GGATG	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	7 cut(s)	119, 340, 421, 455, 480, 530, 573
BstMAI	GTCTC	2 cut(s)	442, 465
BstMBI	GATC	7 cut(s)	116, 337, 418, 452, 477, 527, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 105, 180
BstNSI	RCATGY	1 cut(s)	61
BstSFI	CTRYAG	2 cut(s)	133, 163
BstV1I	GCAGC	3 cut(s)	38, 133, 381
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BsuRI	GGCC	2 cut(s)	104, 393
BtsCI	GGATG	1 cut(s)	625
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	1 cut(s)	106
CaiI	CAGNNNCTG	2 cut(s)	132, 171
CciI	TCATGA	2 cut(s)	286, 334
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	42, 130, 607
CviAII	CATG	6 cut(s)	47, 58, 287, 335, 373, 566
CviQI	GTAC	3 cut(s)	42, 130, 607
DdeI	CTNAG	2 cut(s)	362, 507
DpnI	GATC	7 cut(s)	118, 339, 420, 454, 479, 529, 572
DpnII	GATC	7 cut(s)	116, 337, 418, 452, 477, 527, 570
Eam1104I	CTCTTC	2 cut(s)	495, 528
EarI	CTCTTC	2 cut(s)	495, 528
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	365
EcoRI	GAATTC	2 cut(s)	220, 316
EcoRV	GATATC	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	6 cut(s)	50, 61, 290, 338, 376, 569
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	6 cut(s)	46, 57, 286, 334, 372, 565
FbaI	TGATCA	2 cut(s)	337, 418
Fnu4HI	GCNGC	3 cut(s)	27, 122, 370
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	3 cut(s)	27, 122, 370
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	27, 122, 370
HaeIII	GGCC	2 cut(s)	104, 393
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	6 cut(s)	50, 61, 290, 338, 376, 569
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	2 cut(s)	377, 611
HinfI	GANTC	5 cut(s)	158, 168, 283, 290, 555
HphI	GGTGA	4 cut(s)	178, 312, 438, 610
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	4 cut(s)	116, 282, 470, 532
Hpy188III	TCNNGA	4 cut(s)	266, 287, 335, 617
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4V	TGCA	4 cut(s)	57, 99, 174, 246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 105, 180
HpyF3I	CTNAG	2 cut(s)	362, 507
Hsp92II	CATG	6 cut(s)	50, 61, 290, 338, 376, 569
HspAI	GCGC	1 cut(s)	24
KpnI	GGTACC	1 cut(s)	45
Ksp22I	TGATCA	2 cut(s)	337, 418
Kzo9I	GATC	7 cut(s)	116, 337, 418, 452, 477, 527, 570
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	3 cut(s)	38, 133, 381
LweI	GCATC	1 cut(s)	38
MalI	GATC	7 cut(s)	118, 339, 420, 454, 479, 529, 572
MboI	GATC	7 cut(s)	116, 337, 418, 452, 477, 527, 570
MboII	GAAGA	7 cut(s)	209, 216, 225, 231, 266, 512, 545
MfeI	CAATTG	2 cut(s)	33, 175
MflI	RGATCY	1 cut(s)	452
MluCI	AATT	5 cut(s)	33, 175, 220, 229, 316
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	6 cut(s)	194, 359, 496, 513, 594, 597
MroXI	GAANNNNTTC	1 cut(s)	273
MslI	CAYNNNNRTG	2 cut(s)	241, 348
MunI	CAATTG	2 cut(s)	33, 175
MwoI	GCNNNNNNNGC	3 cut(s)	23, 105, 180
NdeII	GATC	7 cut(s)	116, 337, 418, 452, 477, 527, 570
NlaIII	CATG	6 cut(s)	50, 61, 290, 338, 376, 569
NlaIV	GGNNCC	2 cut(s)	43, 182
NspI	RCATGY	1 cut(s)	61
PagI	TCATGA	2 cut(s)	286, 334
PaqCI	CACCTGC	1 cut(s)	571
PceI	AGGCCT	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	4 cut(s)	168, 283, 290, 555
PkrI	GCNGC	3 cut(s)	28, 123, 371
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	43, 182
PspPI	GGNCC	1 cut(s)	392
PstNI	CAGNNNCTG	2 cut(s)	132, 171
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	3 cut(s)	43, 131, 608
RsaNI	GTAC	3 cut(s)	42, 130, 607
RseI	CAYNNNNRTG	2 cut(s)	241, 348
SatI	GCNGC	3 cut(s)	27, 122, 370
Sau3AI	GATC	7 cut(s)	116, 337, 418, 452, 477, 527, 570
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	38
SfcI	CTRYAG	2 cut(s)	133, 163
SmiMI	CAYNNNNRTG	2 cut(s)	241, 348
Sse9I	AATT	5 cut(s)	33, 175, 220, 229, 316
SseBI	AGGCCT	1 cut(s)	104
SspI	AATATT	1 cut(s)	514
StuI	AGGCCT	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	134
TasI	AATT	5 cut(s)	33, 175, 220, 229, 316
TfiI	GAWTC	4 cut(s)	168, 283, 290, 555
TseI	GCWGC	3 cut(s)	26, 121, 369
TspDTI	ATGAA	4 cut(s)	225, 266, 389, 636
TspGWI	ACGGA	1 cut(s)	447
XapI	RAATTY	3 cut(s)	220, 229, 316
XceI	RCATGY	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.