Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012630

Physical Location & Seq

Genomic Coordinates Reverse (-)

16648679 .. 16649640

Gene Structure 962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAAATGATGTGTATATTTTATTTAATTATATATCACAATAAAACACTCTACACGTCTTGTGGCTTTTTGTTGTGTGGCCGTCGGCCAACCCAAAAAAAAAAAAAAAAAAAATCCCTCATCCCCCCCTCTCTCTCTCTCTCCCTCTCCCCCTCCCTCCTCTGCAGCAACAACAATATGACAACAAGCAGCAAAGGAAACACCACCACCACACCATCAGTAGTCCAAGTGGAAGCAGCAGGCAGCCGTGAGTGCTGCATGTGTGGGGATTTTGGCTTCTCCTATGAGCTCTTCCTTTGCAAGGTTTGCCAATTCAGATCTCAGCACAGGTACTGCAGCAATCTTTACCCAAACGCTGAGTCCTACAGAATCTGCAATTGGTGCCTCACCCAGAAGGAGGACACAAAGGAGAAGTCCCAAAACTCCTCAAATTCTTCCTCCTCATGCAAAAAGGAAACCCAAGATCAAGACCATCCAATTACCAAGATCACTAAGAAAAAGAATAATCCATCAAAAAATAGTAATAATTCATTTGGTGGGTGTCTGAGGGGCACTATGCAGCTGCAACCTAGTGGGCCCATCAAGAAACAGAGATCACTTGATCTTCATCATCTTCCTCGTCATTCATCAGCAGTATCTCCATCACCTTCACCATCTCCAAAATCTGCACCAGTTGTTACCAGAAAGAGGATCATCACAAAAGGGGAAAAGGAGGCTGAGAGGATCAAGAGGACAAGGTCAGAGGACATATCAAACACAAACAACACTAGTACTATTGGGATCACAAGGCAAGTCTTCAGGAACAAGGTCAGAAGATACAAGCTTCTAGATGAAGTTTCAAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.78

Weight (kDa)

9.82

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012630)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35850 FvH4_5g35850
malus_domestica	MD08G1192700.v1.1 MD15G1381100.v1.1
prunus_persica	Prupe.1G527300_v2.0.a1 Prupe.1G527300_v2.0.a1
pyrus_communis	pycom08g16620 pycom15g34160
rosa_chinensis	RchiOBHm_Chr7g0237581
rosa_laevigata	RLG00000000993
rosa_multiflora	Rmu_ssc0000152.1_g000022
rosa_roxburghii	Rroxscaffold_3G00223980
rosa_rugosa	Rorug07G0305500
rosa_samantha	Rh7AG461800 Rh7BG432100 Rh7CG478900 Rh7DG448100
rosa_wichuraiana	Rw0G011790 Rw7G038220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	381
AclWI	GGATC	3 cut(s)	698, 731, 788
AcoI	YGGCCR	2 cut(s)	79, 86
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	781
AfaI	GTAC	2 cut(s)	332, 772
AfiI	CCNNNNNNNGG	3 cut(s)	301, 397, 687
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	840
AhlI	ACTAGT	1 cut(s)	767
AjiI	CACGTC	1 cut(s)	57
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	3 cut(s)	289, 562, 823
AluI	AGCT	3 cut(s)	289, 562, 823
Alw21I	GWGCWC	1 cut(s)	291
AlwI	GGATC	3 cut(s)	698, 731, 788
AlwNI	CAGNNNCTG	2 cut(s)	333, 372
AoxI	GGCC	3 cut(s)	79, 86, 575
ApaI	GGGCCC	1 cut(s)	579
ApeKI	GCWGC	8 cut(s)	165, 189, 236, 243, 255, 336, 559, 562
ApoI	RAATTY	1 cut(s)	430
ArsI	GACNNNNNNTTYG	4 cut(s)	344, 376, 398, 430
AspS9I	GGNCC	2 cut(s)	575, 576
AsuHPI	GGTGA	3 cut(s)	379, 636, 642
BaeGI	GKGCMC	2 cut(s)	554, 579
BanI	GGYRCC	1 cut(s)	381
BanII	GRGCYC	2 cut(s)	291, 579
BbsI	GAAGAC	1 cut(s)	787
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	8 cut(s)	177, 201, 242, 248, 255, 348, 549, 571
BccI	CCATC	6 cut(s)	223, 480, 517, 587, 649, 661
BceAI	ACGGC	2 cut(s)	66, 231
BcuI	ACTAGT	1 cut(s)	767
BfaI	CTAG	3 cut(s)	570, 768, 827
BfmI	CTRYAG	3 cut(s)	163, 334, 364
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	8 cut(s)	166, 190, 237, 244, 256, 337, 560, 563
BlsI	GCNGC	8 cut(s)	167, 191, 238, 245, 257, 338, 561, 564
BmcAI	AGTACT	1 cut(s)	772
BmgBI	CACGTC	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	575, 576
BmiI	GGNNCC	2 cut(s)	383, 577
BpiI	GAAGAC	1 cut(s)	787
BsaBI	GATNNNNATC	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 397, 687
Bse1I	ACTGG	1 cut(s)	671
Bse8I	GATNNNNATC	1 cut(s)	606
BseGI	GGATG	2 cut(s)	120, 472
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	3 cut(s)	301, 397, 687
BseMII	CTCAG	4 cut(s)	335, 348, 536, 708
BseNI	ACTGG	1 cut(s)	671
BseRI	GAGGAG	3 cut(s)	149, 415, 430
BseSI	GKGCMC	2 cut(s)	554, 579
BseXI	GCAGC	8 cut(s)	177, 201, 242, 248, 255, 348, 549, 571
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	3 cut(s)	81, 88, 577
BshNI	GGYRCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	301, 397, 687
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	81, 88, 577
Bsp120I	GGGCCC	1 cut(s)	575
Bsp1286I	GDGCHC	3 cut(s)	291, 554, 579
Bsp143I	GATC	8 cut(s)	317, 463, 486, 593, 601, 690, 723, 780
BspANI	GGCC	3 cut(s)	81, 88, 577
BspCNI	CTCAG	4 cut(s)	334, 349, 537, 709
BspLI	GGNNCC	2 cut(s)	383, 577
BspMAI	CTGCAG	2 cut(s)	167, 338
BspPI	GGATC	3 cut(s)	698, 731, 788
BspQI	GCTCTTC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	671
BssMI	GATC	8 cut(s)	317, 463, 486, 593, 601, 690, 723, 780
Bst6I	CTCTTC	1 cut(s)	296
BstAPI	GCANNNNNTGC	2 cut(s)	306, 381
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	5 cut(s)	321, 357, 492, 545, 717
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	2 cut(s)	120, 472
BstKTI	GATC	8 cut(s)	320, 466, 489, 596, 604, 693, 726, 783
BstMBI	GATC	8 cut(s)	317, 463, 486, 593, 601, 690, 723, 780
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 306, 381
BstNSI	RCATGY	1 cut(s)	262
BstSFI	CTRYAG	3 cut(s)	163, 334, 364
BstSLI	GKGCMC	2 cut(s)	554, 579
BstV1I	GCAGC	8 cut(s)	177, 201, 242, 248, 255, 348, 549, 571
BstV2I	GAAGAC	1 cut(s)	787
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	81, 88, 577
BtrI	CACGTC	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	120, 472
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	2 cut(s)	333, 372
Cfr13I	GGNCC	2 cut(s)	575, 576
Csp6I	GTAC	2 cut(s)	331, 771
CviAII	CATG	2 cut(s)	259, 444
CviQI	GTAC	2 cut(s)	331, 771
DdeI	CTNAG	5 cut(s)	321, 357, 492, 545, 717
DpnI	GATC	8 cut(s)	319, 465, 488, 595, 603, 692, 725, 782
DpnII	GATC	8 cut(s)	317, 463, 486, 593, 601, 690, 723, 780
EaeI	YGGCCR	2 cut(s)	79, 86
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	2 cut(s)	291, 579
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	781
EcoICRI	GAGCTC	1 cut(s)	289
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoT38I	GRGCYC	2 cut(s)	291, 579
FaeI	CATG	2 cut(s)	262, 447
FaiI	YATR	9 cut(s)	17, 32, 34, 179, 260, 285, 445, 557, 749
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	2 cut(s)	258, 443
Fnu4HI	GCNGC	8 cut(s)	166, 190, 237, 244, 256, 337, 560, 563
FokI	GGATG	2 cut(s)	107, 459
FriOI	GRGCYC	2 cut(s)	291, 579
Fsp4HI	GCNGC	8 cut(s)	166, 190, 237, 244, 256, 337, 560, 563
FspBI	CTAG	3 cut(s)	570, 768, 827
GluI	GCNGC	8 cut(s)	166, 190, 237, 244, 256, 337, 560, 563
HaeIII	GGCC	3 cut(s)	81, 88, 577
Hin1II	CATG	2 cut(s)	262, 447
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	2 cut(s)	359, 369
HphI	GGTGA	3 cut(s)	379, 636, 642
Hpy188I	TCNGA	4 cut(s)	317, 546, 742, 812
Hpy188III	TCNNGA	5 cut(s)	467, 583, 727, 799, 827
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	388, 657
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	9 cut(s)	165, 258, 300, 336, 375, 447, 559, 565, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 306, 381
HpyF3I	CTNAG	5 cut(s)	321, 357, 492, 545, 717
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	262, 447
Kzo9I	GATC	8 cut(s)	317, 463, 486, 593, 601, 690, 723, 780
LguI	GCTCTTC	1 cut(s)	296
LpnPI	CCDG	6 cut(s)	225, 313, 404, 684, 694, 784
Lsp1109I	GCAGC	8 cut(s)	177, 201, 242, 248, 255, 348, 549, 571
MaeI	CTAG	3 cut(s)	570, 768, 827
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	8 cut(s)	319, 465, 488, 595, 603, 692, 725, 782
MboI	GATC	8 cut(s)	317, 463, 486, 593, 601, 690, 723, 780
MboII	GAAGA	6 cut(s)	283, 426, 596, 605, 787, 825
MfeI	CAATTG	1 cut(s)	376
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	3 cut(s)	291, 554, 579
MluCI	AATT	6 cut(s)	27, 311, 376, 430, 477, 526
MlyI	GAGTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	562
MunI	CAATTG	1 cut(s)	376
MwoI	GCNNNNNNNGC	3 cut(s)	252, 306, 381
NdeII	GATC	8 cut(s)	317, 463, 486, 593, 601, 690, 723, 780
NlaIII	CATG	2 cut(s)	262, 447
NlaIV	GGNNCC	2 cut(s)	383, 577
NspI	RCATGY	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	369
PflFI	GACNNNGTC	1 cut(s)	736
PkrI	GCNGC	8 cut(s)	167, 191, 238, 245, 257, 338, 561, 564
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	383, 577
PspOMI	GGGCCC	1 cut(s)	575
PspPI	GGNCC	2 cut(s)	575, 576
PstI	CTGCAG	2 cut(s)	167, 338
PstNI	CAGNNNCTG	2 cut(s)	333, 372
PsuI	RGATCY	1 cut(s)	317
PsyI	GACNNNGTC	1 cut(s)	736
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	2 cut(s)	332, 772
RsaNI	GTAC	2 cut(s)	331, 771
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	8 cut(s)	166, 190, 237, 244, 256, 337, 560, 563
Sau3AI	GATC	8 cut(s)	317, 463, 486, 593, 601, 690, 723, 780
Sau96I	GGNCC	2 cut(s)	575, 576
ScaI	AGTACT	1 cut(s)	772
SchI	GAGTC	1 cut(s)	368
SduI	GDGCHC	3 cut(s)	291, 554, 579
SfcI	CTRYAG	3 cut(s)	163, 334, 364
SpeI	ACTAGT	1 cut(s)	767
Sse9I	AATT	6 cut(s)	27, 311, 376, 430, 477, 526
SspMI	CTAG	3 cut(s)	570, 768, 827
SstI	GAGCTC	1 cut(s)	291
TaiI	ACGT	1 cut(s)	59
TasI	AATT	6 cut(s)	27, 311, 376, 430, 477, 526
TatI	WGTACW	1 cut(s)	770
TfiI	GAWTC	1 cut(s)	369
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseI	GCWGC	8 cut(s)	165, 189, 236, 243, 255, 336, 559, 562
TspDTI	ATGAA	5 cut(s)	17, 519, 596, 615, 846
Tth111I	GACNNNGTC	1 cut(s)	736
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	430
XbaI	TCTAGA	1 cut(s)	826
XceI	RCATGY	1 cut(s)	262
XspI	CTAG	3 cut(s)	570, 768, 827
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.