Rw0G011790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00511
OG0012630
Physical Location & Seq
Forward (+)
17303 .. 18089
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011790.1

Sequence Viewer

Length: 687 bp
ATGAGAATCGAAGATCGAAACAGAGCAAGAAGCAAGCAAGCAAGCAATATGACAACAAACAAAGCAGGAAGCGCAGCATCAATTGAAGGTACCCATGAGTGTTGCATGTGTGGGGATTTTGGCTTCTCCTACGAGCTTTTCCAATGCAAGGCCTGCCAGTTCAGATCGCAGCACAGGTACTGTAGCAATCTTTACCCAAAAGCAGAGTCCTACAGAATCTGCAATTGGTGCCTCACCCAGAAAGAAGAAACAAAAGAAAAGTCGCAGAATTCTTCAAATTCTTCATCTTCGTGCAAAAAAGACCAATCCCATCAAGAACATCTTCATCAGAATCATGATTCCAAGGTCAACAGAATAAAAAAGAATTCACCGAAAGCCAGTCATGATCATCATACAGATGGTTCTGGTCTAAGAGGCAGCATGAAGCTTCAGCCAAGTGGCCCTATAAAGAAGCAGAAATCACTTGATCATCATCATAATCAGGTCTCATCATCACCAAGATCTCCGTCTCTGGTCAGAAAAAGGATCATCAAAAATGGAGCAAAGGAAGAGGCTGAGAATATTAGGAGGACGAGATCAGAAGAGATATCAAACATAAACAGAATCAATAATCATGGGATCACAAGGCAGGTGTTTAGGAGTAGGGTGAGGAGGTACAAGCTTCTGGATGAAGTTTCAAGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

26.18

Weight (kDa)

9.8

Isoelectric Point (pI)

66.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 35 - 77 1.8e-22 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 619
Acc36I ACCTGC 1 cut(s) 619
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 2 cut(s) 89, 228
AclWI GGATC 2 cut(s) 533, 626
AcsI RAATTY 3 cut(s) 268, 277, 364
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 3 cut(s) 91, 179, 656
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 3 cut(s) 86, 276, 678
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AluBI AGCT 3 cut(s) 136, 427, 661
AluI AGCT 3 cut(s) 136, 427, 661
Alw26I GTCTC 2 cut(s) 490, 513
AlwI GGATC 2 cut(s) 533, 626
AlwNI CAGNNNCTG 2 cut(s) 180, 219
AoxI GGCC 2 cut(s) 150, 439
ApeKI GCWGC 3 cut(s) 74, 169, 417
ApoI RAATTY 3 cut(s) 268, 277, 364
ArsI GACNNNNNNTTYG 4 cut(s) 191, 223, 245, 277
Asp700I GAANNNNTTC 1 cut(s) 321
Asp718I GGTACC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 440
AsuHPI GGTGA 4 cut(s) 226, 360, 486, 658
BanI GGYRCC 2 cut(s) 89, 228
BbvI GCAGC 3 cut(s) 86, 181, 429
BccI CCATC 2 cut(s) 318, 392
BclI TGATCA 2 cut(s) 385, 466
BcoDI GTCTC 2 cut(s) 490, 513
BfmI CTRYAG 2 cut(s) 181, 211
BfuAI ACCTGC 1 cut(s) 619
BglII AGATCT 1 cut(s) 500
BisI GCNGC 3 cut(s) 75, 170, 418
BlsI GCNGC 3 cut(s) 76, 171, 419
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 2 cut(s) 91, 230
BmsI GCATC 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 490
BsaJI CCNNGG 1 cut(s) 342
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 2 cut(s) 157, 378
Bse8I GATNNNNATC 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 673
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 2 cut(s) 157, 378
BseRI GAGGAG 1 cut(s) 664
BseXI GCAGC 3 cut(s) 86, 181, 429
BshFI GGCC 2 cut(s) 152, 441
BshNI GGYRCC 2 cut(s) 89, 228
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 490, 513
BsmBI CGTCTC 1 cut(s) 513
BsnI GGCC 2 cut(s) 152, 441
Bso31I GGTCTC 1 cut(s) 490
Bsp143I GATC 8 cut(s) 13, 164, 385, 466, 500, 525, 575, 618
BspANI GGCC 2 cut(s) 152, 441
BspCNI CTCAG 1 cut(s) 547
BspHI TCATGA 2 cut(s) 334, 382
BspLI GGNNCC 2 cut(s) 91, 230
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 2 cut(s) 533, 626
BspT107I GGYRCC 2 cut(s) 89, 228
BspTNI GGTCTC 1 cut(s) 490
BsrI ACTGG 2 cut(s) 157, 378
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 8 cut(s) 13, 164, 385, 466, 500, 525, 575, 618
BssT1I CCWWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 182
Bst6I CTCTTC 2 cut(s) 543, 576
BstAPI GCANNNNNTGC 2 cut(s) 153, 228
BstC8I GCNNGC 4 cut(s) 35, 39, 43, 154
BstDEI CTNAG 2 cut(s) 410, 555
BstF5I GGATG 1 cut(s) 673
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 8 cut(s) 16, 167, 388, 469, 503, 528, 578, 621
BstMAI GTCTC 2 cut(s) 490, 513
BstMBI GATC 8 cut(s) 13, 164, 385, 466, 500, 525, 575, 618
BstMWI GCNNNNNNNGC 3 cut(s) 71, 153, 228
BstNSI RCATGY 1 cut(s) 109
BstSFI CTRYAG 2 cut(s) 181, 211
BstV1I GCAGC 3 cut(s) 86, 181, 429
BstX2I RGATCY 1 cut(s) 500
BstYI RGATCY 1 cut(s) 500
BsuRI GGCC 2 cut(s) 152, 441
BtsCI GGATG 1 cut(s) 673
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 4 cut(s) 35, 39, 43, 154
CaiI CAGNNNCTG 2 cut(s) 180, 219
CciI TCATGA 2 cut(s) 334, 382
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 440
Csp6I GTAC 3 cut(s) 90, 178, 655
CviAII CATG 6 cut(s) 95, 106, 335, 383, 421, 614
CviJI RGCY 9 cut(s) 123, 136, 152, 377, 427, 433, 441, 554, 661
CviKI_1 RGCY 9 cut(s) 123, 136, 152, 377, 427, 433, 441, 554, 661
CviQI GTAC 3 cut(s) 90, 178, 655
DdeI CTNAG 2 cut(s) 410, 555
DpnI GATC 8 cut(s) 15, 166, 387, 468, 502, 527, 577, 620
DpnII GATC 8 cut(s) 13, 164, 385, 466, 500, 525, 575, 618
Eam1104I CTCTTC 2 cut(s) 543, 576
EarI CTCTTC 2 cut(s) 543, 576
Eco130I CCWWGG 1 cut(s) 342
Eco147I AGGCCT 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 490
Eco32I GATATC 1 cut(s) 588
Eco57I CTGAAG 1 cut(s) 413
EcoRI GAATTC 2 cut(s) 268, 364
EcoRV GATATC 1 cut(s) 588
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 513
FaeI CATG 6 cut(s) 98, 109, 338, 386, 424, 617
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FatI CATG 6 cut(s) 94, 105, 334, 382, 420, 613
FbaI TGATCA 2 cut(s) 385, 466
Fnu4HI GCNGC 3 cut(s) 75, 170, 418
FokI GGATG 1 cut(s) 680
Fsp4HI GCNGC 3 cut(s) 75, 170, 418
GlaI GCGC 1 cut(s) 73
GluI GCNGC 3 cut(s) 75, 170, 418
HaeIII GGCC 2 cut(s) 152, 441
HhaI GCGC 1 cut(s) 74
Hin1II CATG 6 cut(s) 98, 109, 338, 386, 424, 617
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 2 cut(s) 425, 659
HinfI GANTC 6 cut(s) 6, 206, 216, 331, 338, 603
HphI GGTGA 4 cut(s) 226, 360, 486, 658
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 4 cut(s) 164, 330, 518, 580
Hpy188III TCNNGA 4 cut(s) 314, 335, 383, 665
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 4 cut(s) 105, 147, 222, 294
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 153, 228
HpyF3I CTNAG 2 cut(s) 410, 555
Hsp92II CATG 6 cut(s) 98, 109, 338, 386, 424, 617
HspAI GCGC 1 cut(s) 72
KpnI GGTACC 1 cut(s) 93
Ksp22I TGATCA 2 cut(s) 385, 466
Kzo9I GATC 8 cut(s) 13, 164, 385, 466, 500, 525, 575, 618
LmnI GCTCC 1 cut(s) 539
Lsp1109I GCAGC 3 cut(s) 86, 181, 429
LweI GCATC 1 cut(s) 86
MalI GATC 8 cut(s) 15, 166, 387, 468, 502, 527, 577, 620
MboI GATC 8 cut(s) 13, 164, 385, 466, 500, 525, 575, 618
MboII GAAGA 8 cut(s) 23, 257, 264, 273, 279, 314, 560, 593
MfeI CAATTG 2 cut(s) 81, 223
MflI RGATCY 1 cut(s) 500
MluCI AATT 5 cut(s) 81, 223, 268, 277, 364
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 6 cut(s) 242, 407, 544, 561, 642, 645
MroXI GAANNNNTTC 1 cut(s) 321
MslI CAYNNNNRTG 2 cut(s) 289, 396
MunI CAATTG 2 cut(s) 81, 223
MwoI GCNNNNNNNGC 3 cut(s) 71, 153, 228
NdeII GATC 8 cut(s) 13, 164, 385, 466, 500, 525, 575, 618
NlaIII CATG 6 cut(s) 98, 109, 338, 386, 424, 617
NlaIV GGNNCC 2 cut(s) 91, 230
NspI RCATGY 1 cut(s) 109
PagI TCATGA 2 cut(s) 334, 382
PaqCI CACCTGC 1 cut(s) 619
PceI AGGCCT 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 5 cut(s) 6, 216, 331, 338, 603
PkrI GCNGC 3 cut(s) 76, 171, 419
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 91, 230
PspPI GGNCC 1 cut(s) 440
PstNI CAGNNNCTG 2 cut(s) 180, 219
PsuI RGATCY 1 cut(s) 500
RsaI GTAC 3 cut(s) 91, 179, 656
RsaNI GTAC 3 cut(s) 90, 178, 655
RseI CAYNNNNRTG 2 cut(s) 289, 396
SatI GCNGC 3 cut(s) 75, 170, 418
Sau3AI GATC 8 cut(s) 13, 164, 385, 466, 500, 525, 575, 618
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 1 cut(s) 215
SetI ASST 9 cut(s) 91, 138, 179, 348, 429, 486, 633, 656, 663
SfaNI GCATC 1 cut(s) 86
SfcI CTRYAG 2 cut(s) 181, 211
SmiMI CAYNNNNRTG 2 cut(s) 289, 396
Sse9I AATT 5 cut(s) 81, 223, 268, 277, 364
SseBI AGGCCT 1 cut(s) 152
SspI AATATT 1 cut(s) 562
StuI AGGCCT 1 cut(s) 152
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 2 cut(s) 9, 16
TasI AATT 5 cut(s) 81, 223, 268, 277, 364
TfiI GAWTC 5 cut(s) 6, 216, 331, 338, 603
TseI GCWGC 3 cut(s) 74, 169, 417
TspDTI ATGAA 4 cut(s) 273, 314, 437, 684
TspGWI ACGGA 1 cut(s) 495
XapI RAATTY 3 cut(s) 268, 277, 364
XceI RCATGY 1 cut(s) 109
XmnI GAANNNNTTC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.