pycom15g34160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012630
Physical Location & Seq
Reverse (-)
33766097 .. 33767177
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g34160.1

Sequence Viewer

Length: 792 bp
ATGATTTCAATCCCAATAAAACACTACACGTTTTGTGGCTTTTGTTGTGTGGCCGTCGGCCTACCCAAAAAAATCCCTCCCCCATCATTCATCTCTCCCTCTCTCCCTCTCCTCTGCAACAACAATATGACAACAAGTAGCAAAGGAAACAACAACGCAGCATCAGTAGTCCAAGTCCAAGAGCAAGCAGCAGGTAGCCATGAGTGCTGCATGTGTGGGGATTTTGGCTTCTCCTATGAGCTCTTTCTTTGCAAGGTTTGCCAATTCAGATCTCAGCACAGGTACTGCAGCAATCTTTACCCGAATGCTGAGTCCTACAGAATCTGCAATTGGTGCCTCACCCAGAAGGAGGACACAAAGGAAAAGTCCCCGAACTCCTCAAATTCTTCATCCTCATGCAAAAGGGAATCCCAAGATCAAGACCACCCAATTACCAAGATCAGCATCAAGAAAAAGATTTCATCAAAAAACAGTAATAATCCATATGGTGGGTGTCTGAGGGGCACTATGCAGCTGCAACCAAGCGGGCCCATCAAGAAACAGAGATCACTTGATCTTCATCGTCAATCATCAGCAATATCTCCATCTCCATCACCATCTCCAAAATCTGCACCAGTTGTTACCAGAAAGAGGATCATCACAAATGCGGCAAAGGAGGCTGAGAGGATCAGGAGGACAAGGTCAGAGGGCATATCAAACATAAAAAACACAAGCACTATTGGGATCACAAGGCAAGTCTTCAGGAATAAGGTCAGAAGGTACAAGCTTTTGGATGAAGTTTCAAGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.27

Weight (kDa)

9.68

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 70 - 112 1.8e-21 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 333
AccB7I CCANNNNNTGG 1 cut(s) 488
AciI CCGC 2 cut(s) 525, 647
AclWI GGATC 3 cut(s) 641, 674, 731
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 1 cut(s) 724
AfaI GTAC 2 cut(s) 284, 761
AfiI CCNNNNNNNGG 3 cut(s) 349, 488, 630
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 2 cut(s) 9, 783
AjuI GAANNNNNNNTTGG 2 cut(s) 313, 345
AluBI AGCT 3 cut(s) 241, 514, 766
AluI AGCT 3 cut(s) 241, 514, 766
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 3 cut(s) 641, 674, 731
AlwNI CAGNNNCTG 2 cut(s) 285, 324
AoxI GGCC 3 cut(s) 51, 58, 527
ApaI GGGCCC 1 cut(s) 531
ApeKI GCWGC 6 cut(s) 158, 188, 207, 288, 511, 514
ApoI RAATTY 1 cut(s) 382
ArsI GACNNNNNNTTYG 4 cut(s) 296, 328, 350, 382
AspS9I GGNCC 2 cut(s) 527, 528
AsuHPI GGTGA 2 cut(s) 331, 585
BaeGI GKGCMC 2 cut(s) 506, 531
BanI GGYRCC 1 cut(s) 333
BanII GRGCYC 2 cut(s) 243, 531
BbsI GAAGAC 1 cut(s) 730
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 6 cut(s) 170, 194, 200, 300, 501, 523
BccI CCATC 5 cut(s) 91, 539, 592, 598, 604
BceAI ACGGC 1 cut(s) 38
BfmI CTRYAG 2 cut(s) 286, 316
BfuAI ACCTGC 1 cut(s) 182
BglII AGATCT 1 cut(s) 269
BisI GCNGC 7 cut(s) 159, 189, 208, 289, 512, 515, 648
BlsI GCNGC 7 cut(s) 160, 190, 209, 290, 513, 516, 649
BmgT120I GGNCC 2 cut(s) 527, 528
BmiI GGNNCC 2 cut(s) 335, 529
BmsI GCATC 2 cut(s) 170, 453
BpiI GAAGAC 1 cut(s) 730
BsaBI GATNNNNATC 3 cut(s) 8, 443, 558
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 488, 630
Bse1I ACTGG 1 cut(s) 614
Bse8I GATNNNNATC 3 cut(s) 8, 443, 558
BseGI GGATG 2 cut(s) 389, 778
BseJI GATNNNNATC 3 cut(s) 8, 443, 558
BseLI CCNNNNNNNGG 3 cut(s) 349, 488, 630
BseMII CTCAG 4 cut(s) 287, 300, 488, 651
BseNI ACTGG 1 cut(s) 614
BseRI GAGGAG 2 cut(s) 101, 367
BseSI GKGCMC 2 cut(s) 506, 531
BseXI GCAGC 6 cut(s) 170, 194, 200, 300, 501, 523
BsgI GTGCAG 1 cut(s) 594
BshFI GGCC 3 cut(s) 53, 60, 529
BshNI GGYRCC 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 243
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 3 cut(s) 349, 488, 630
BsmFI GGGAC 1 cut(s) 352
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 3 cut(s) 53, 60, 529
Bsp120I GGGCCC 1 cut(s) 527
Bsp1286I GDGCHC 3 cut(s) 243, 506, 531
Bsp143I GATC 8 cut(s) 269, 415, 438, 545, 553, 633, 666, 723
BspACI CCGC 2 cut(s) 525, 647
BspANI GGCC 3 cut(s) 53, 60, 529
BspCNI CTCAG 4 cut(s) 286, 301, 489, 652
BspLI GGNNCC 2 cut(s) 335, 529
BspMAI CTGCAG 1 cut(s) 290
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 3 cut(s) 641, 674, 731
BspT107I GGYRCC 1 cut(s) 333
BsrI ACTGG 1 cut(s) 614
BssMI GATC 8 cut(s) 269, 415, 438, 545, 553, 633, 666, 723
Bst4CI ACNGT 1 cut(s) 473
BstAPI GCANNNNNTGC 2 cut(s) 258, 333
BstC8I GCNNGC 2 cut(s) 186, 527
BstDEI CTNAG 4 cut(s) 273, 309, 497, 660
BstF5I GGATG 2 cut(s) 389, 778
BstKTI GATC 8 cut(s) 272, 418, 441, 548, 556, 636, 669, 726
BstMBI GATC 8 cut(s) 269, 415, 438, 545, 553, 633, 666, 723
BstMWI GCNNNNNNNGC 4 cut(s) 204, 258, 333, 656
BstNSI RCATGY 1 cut(s) 214
BstSFI CTRYAG 2 cut(s) 286, 316
BstSLI GKGCMC 2 cut(s) 506, 531
BstV1I GCAGC 6 cut(s) 170, 194, 200, 300, 501, 523
BstV2I GAAGAC 1 cut(s) 730
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 3 cut(s) 53, 60, 529
BtsCI GGATG 2 cut(s) 389, 778
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 186, 527
CaiI CAGNNNCTG 2 cut(s) 285, 324
Cfr13I GGNCC 2 cut(s) 527, 528
Csp6I GTAC 2 cut(s) 283, 760
CviAII CATG 3 cut(s) 200, 211, 396
CviQI GTAC 2 cut(s) 283, 760
DdeI CTNAG 4 cut(s) 273, 309, 497, 660
DpnI GATC 8 cut(s) 271, 417, 440, 547, 555, 635, 668, 725
DpnII GATC 8 cut(s) 269, 415, 438, 545, 553, 633, 666, 723
EaeI YGGCCR 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 2 cut(s) 243, 531
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 724
EcoICRI GAGCTC 1 cut(s) 241
EcoT38I GRGCYC 2 cut(s) 243, 531
FaeI CATG 3 cut(s) 203, 214, 399
FaqI GGGAC 1 cut(s) 352
FatI CATG 3 cut(s) 199, 210, 395
FauI CCCGC 1 cut(s) 518
FauNDI CATATG 1 cut(s) 484
Fnu4HI GCNGC 7 cut(s) 159, 189, 208, 289, 512, 515, 648
FokI GGATG 2 cut(s) 376, 785
FriOI GRGCYC 2 cut(s) 243, 531
Fsp4HI GCNGC 7 cut(s) 159, 189, 208, 289, 512, 515, 648
GluI GCNGC 7 cut(s) 159, 189, 208, 289, 512, 515, 648
HaeIII GGCC 3 cut(s) 53, 60, 529
Hin1II CATG 3 cut(s) 203, 214, 399
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 3 cut(s) 311, 321, 407
HphI GGTGA 2 cut(s) 331, 585
Hpy188I TCNGA 4 cut(s) 269, 498, 685, 755
Hpy188III TCNNGA 5 cut(s) 419, 448, 535, 670, 742
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 340, 750
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 9 cut(s) 117, 210, 252, 288, 327, 399, 511, 517, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 204, 258, 333, 656
HpyF3I CTNAG 4 cut(s) 273, 309, 497, 660
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 3 cut(s) 203, 214, 399
Kzo9I GATC 8 cut(s) 269, 415, 438, 545, 553, 633, 666, 723
LpnPI CCDG 7 cut(s) 177, 265, 356, 627, 637, 655, 727
Lsp1109I GCAGC 6 cut(s) 170, 194, 200, 300, 501, 523
LweI GCATC 2 cut(s) 170, 453
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 619
MalI GATC 8 cut(s) 271, 417, 440, 547, 555, 635, 668, 725
MboI GATC 8 cut(s) 269, 415, 438, 545, 553, 633, 666, 723
MboII GAAGA 3 cut(s) 378, 548, 730
MfeI CAATTG 1 cut(s) 328
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 3 cut(s) 243, 506, 531
MluCI AATT 4 cut(s) 263, 328, 382, 429
MlyI GAGTC 1 cut(s) 320
MslI CAYNNNNRTG 1 cut(s) 394
MspA1I CMGCKG 1 cut(s) 514
MunI CAATTG 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 310
MwoI GCNNNNNNNGC 4 cut(s) 204, 258, 333, 656
NdeI CATATG 1 cut(s) 484
NdeII GATC 8 cut(s) 269, 415, 438, 545, 553, 633, 666, 723
NlaIII CATG 3 cut(s) 203, 214, 399
NlaIV GGNNCC 2 cut(s) 335, 529
NspI RCATGY 1 cut(s) 214
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 321, 407
PflFI GACNNNGTC 1 cut(s) 679
PflMI CCANNNNNTGG 1 cut(s) 488
PkrI GCNGC 7 cut(s) 160, 190, 209, 290, 513, 516, 649
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 335, 529
PspOMI GGGCCC 1 cut(s) 527
PspPI GGNCC 2 cut(s) 527, 528
PstI CTGCAG 1 cut(s) 290
PstNI CAGNNNCTG 2 cut(s) 285, 324
PsuI RGATCY 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 679
PvuII CAGCTG 1 cut(s) 514
RsaI GTAC 2 cut(s) 284, 761
RsaNI GTAC 2 cut(s) 283, 760
RseI CAYNNNNRTG 1 cut(s) 394
SacI GAGCTC 1 cut(s) 243
SatI GCNGC 7 cut(s) 159, 189, 208, 289, 512, 515, 648
Sau3AI GATC 8 cut(s) 269, 415, 438, 545, 553, 633, 666, 723
Sau96I GGNCC 2 cut(s) 527, 528
SchI GAGTC 1 cut(s) 320
SduI GDGCHC 3 cut(s) 243, 506, 531
SfaNI GCATC 2 cut(s) 170, 453
SfcI CTRYAG 2 cut(s) 286, 316
SmiMI CAYNNNNRTG 1 cut(s) 394
Sse9I AATT 4 cut(s) 263, 328, 382, 429
SsiI CCGC 2 cut(s) 525, 647
SstI GAGCTC 1 cut(s) 243
TaaI ACNGT 1 cut(s) 473
TaiI ACGT 1 cut(s) 32
TasI AATT 4 cut(s) 263, 328, 382, 429
TauI GCSGC 1 cut(s) 650
TfiI GAWTC 2 cut(s) 321, 407
TseI GCWGC 6 cut(s) 158, 188, 207, 288, 511, 514
TspDTI ATGAA 5 cut(s) 79, 378, 450, 548, 789
Tth111I GACNNNGTC 1 cut(s) 679
Van91I CCANNNNNTGG 1 cut(s) 488
XapI RAATTY 1 cut(s) 382
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.