Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012630

Physical Location & Seq

Genomic Coordinates Reverse (-)

43169428 .. 43170802

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G527300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGACGAGCAGCAAAGGAACCACAGCAGCAGCAGCAGCAGCAGCCCAACCAACCCATGAGTGCTGCATGTGTGGGGATTTTGGCTTCTCCTATGAGCTCTTCCAATGCAAGGTTTGCCAATTCAGATCTCAGCACAGGTACTGTAGCAATCTTTACCCAAATGCAGAGTCTTACAGAATTTGCAATTGGTGCCTTACCCAGAAGGAGGACACAAAAGAAAAGTCCCAAAATTCCTCAAACTCTTCATCTTCATGCAGAAAAGAGGGCCAAGATCATGACCCAGCCAAGATCAACAAGAAAACGAACTCATCAAAAACCAGTGATCATCAGAACAAGCAGGGGCATGGAGGTAATTCATATGGGGGTCTAAGGGGCACCATGCAGCTGCAGCCAAGTGGCCCTATAAAGAAACAGAGACCACTTGATCTTCATCATAACCATCAGGGTTTTGGATCAGCATCTCCATCTCCATCTCCATCTCCATCTCCAAAATCTCCATCCACCAGAAAGAGGATCCTCACAAATGGGCAGAAGGAGGCCGAGAAGATTAGGAGGACAAGGTCAGAGGACATATCAAACTTAAACAATGGGATCATTACAAGGCAGGTCTTTAGGAACAAGGTGAGAAGGTACAAGCTTTTGGATGAGGTTTCAAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.51

Weight (kDa)

9.64

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012630)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35850 FvH4_5g35850
malus_domestica	MD08G1192700.v1.1 MD15G1381100.v1.1
prunus_persica	Prupe.1G527300_v2.0.a1 Prupe.1G527300_v2.0.a1
pyrus_communis	pycom08g16620 pycom15g34160
rosa_chinensis	RchiOBHm_Chr7g0237581
rosa_laevigata	RLG00000000993
rosa_multiflora	Rmu_ssc0000152.1_g000022
rosa_roxburghii	Rroxscaffold_3G00223980
rosa_rugosa	Rorug07G0305500
rosa_samantha	Rh7AG461800 Rh7BG432100 Rh7CG478900 Rh7DG448100
rosa_wichuraiana	Rw0G011790 Rw7G038220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	595
AccB1I	GGYRCC	2 cut(s)	189, 374
AclWI	GGATC	4 cut(s)	460, 508, 521, 599
AcsI	RAATTY	2 cut(s)	177, 229
AfaI	GTAC	2 cut(s)	140, 632
AfiI	CCNNNNNNNGG	3 cut(s)	109, 205, 510
AgsI	TTSAA	1 cut(s)	654
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	3 cut(s)	97, 385, 637
AluI	AGCT	3 cut(s)	97, 385, 637
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	4 cut(s)	460, 508, 521, 599
AlwNI	CAGNNNCTG	1 cut(s)	141
AoxI	GGCC	3 cut(s)	265, 397, 537
ApoI	RAATTY	2 cut(s)	177, 229
ArsI	GACNNNNNNTTYG	4 cut(s)	152, 184, 206, 238
AspS9I	GGNCC	2 cut(s)	265, 398
AsuHPI	GGTGA	1 cut(s)	634
BaeGI	GKGCMC	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	513
BanI	GGYRCC	2 cut(s)	189, 374
BanII	GRGCYC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	99
BccI	CCATC	6 cut(s)	447, 472, 478, 484, 490, 505
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	409
BfmI	CTRYAG	2 cut(s)	142, 386
BfuAI	ACCTGC	1 cut(s)	595
BglII	AGATCT	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	265, 398
BmiI	GGNNCC	4 cut(s)	19, 191, 376, 515
BmsI	GCATC	1 cut(s)	467
BsaBI	GATNNNNATC	2 cut(s)	429, 457
BsaI	GGTCTC	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 205, 510
Bse1I	ACTGG	1 cut(s)	318
Bse8I	GATNNNNATC	2 cut(s)	429, 457
BseGI	GGATG	2 cut(s)	497, 649
BseJI	GATNNNNATC	2 cut(s)	429, 457
BseLI	CCNNNNNNNGG	3 cut(s)	109, 205, 510
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	318
BseSI	GKGCMC	1 cut(s)	377
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	3 cut(s)	267, 399, 539
BshNI	GGYRCC	2 cut(s)	189, 374
BsiHKAI	GWGCWC	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	3 cut(s)	109, 205, 510
BsmAI	GTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	267, 399, 539
Bso31I	GGTCTC	1 cut(s)	409
Bsp1286I	GDGCHC	2 cut(s)	99, 377
Bsp143I	GATC	8 cut(s)	125, 271, 288, 322, 424, 452, 513, 591
BspANI	GGCC	3 cut(s)	267, 399, 539
BspCNI	CTCAG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	4 cut(s)	19, 191, 376, 515
BspMAI	CTGCAG	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	4 cut(s)	460, 508, 521, 599
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	2 cut(s)	189, 374
BspTNI	GGTCTC	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	318
BssMI	GATC	8 cut(s)	125, 271, 288, 322, 424, 452, 513, 591
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	2 cut(s)	104, 247
BstAPI	GCANNNNNTGC	2 cut(s)	114, 189
BstDEI	CTNAG	2 cut(s)	129, 368
BstF5I	GGATG	2 cut(s)	497, 649
BstKTI	GATC	8 cut(s)	128, 274, 291, 325, 427, 455, 516, 594
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	8 cut(s)	125, 271, 288, 322, 424, 452, 513, 591
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 35, 38, 41, 114, 189, 388
BstNSI	RCATGY	1 cut(s)	70
BstSFI	CTRYAG	2 cut(s)	142, 386
BstSLI	GKGCMC	1 cut(s)	377
BstX2I	RGATCY	2 cut(s)	125, 513
BstYI	RGATCY	2 cut(s)	125, 513
BsuRI	GGCC	3 cut(s)	267, 399, 539
BtsCI	GGATG	2 cut(s)	497, 649
BtsIMutI	CAGTG	1 cut(s)	325
BveI	ACCTGC	1 cut(s)	595
CaiI	CAGNNNCTG	1 cut(s)	141
CciI	TCATGA	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	265, 398
Csp6I	GTAC	2 cut(s)	139, 631
CviAII	CATG	6 cut(s)	56, 67, 252, 275, 344, 379
CviQI	GTAC	2 cut(s)	139, 631
DdeI	CTNAG	2 cut(s)	129, 368
DpnI	GATC	8 cut(s)	127, 273, 290, 324, 426, 454, 515, 593
DpnII	GATC	8 cut(s)	125, 271, 288, 322, 424, 452, 513, 591
Eam1104I	CTCTTC	2 cut(s)	104, 247
EarI	CTCTTC	2 cut(s)	104, 247
Ecl136II	GAGCTC	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	6 cut(s)	59, 70, 255, 278, 347, 382
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	6 cut(s)	55, 66, 251, 274, 343, 378
FauNDI	CATATG	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	322
FokI	GGATG	2 cut(s)	484, 656
FriOI	GRGCYC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	284
HaeIII	GGCC	3 cut(s)	267, 399, 539
Hin1II	CATG	6 cut(s)	59, 70, 255, 278, 347, 382
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	1 cut(s)	167
HphI	GGTGA	1 cut(s)	634
Hpy188I	TCNGA	3 cut(s)	125, 330, 565
Hpy188III	TCNNGA	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	196, 526, 621
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	7 cut(s)	66, 108, 164, 183, 255, 382, 388
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 35, 38, 41, 114, 189, 388
HpyF3I	CTNAG	2 cut(s)	129, 368
Hsp92II	CATG	6 cut(s)	59, 70, 255, 278, 347, 382
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	8 cut(s)	125, 271, 288, 322, 424, 452, 513, 591
LguI	GCTCTTC	1 cut(s)	104
LpnPI	CCDG	8 cut(s)	121, 212, 294, 323, 331, 428, 517, 590
LweI	GCATC	1 cut(s)	467
MalI	GATC	8 cut(s)	127, 273, 290, 324, 426, 454, 515, 593
MboI	GATC	8 cut(s)	125, 271, 288, 322, 424, 452, 513, 591
MboII	GAAGA	5 cut(s)	91, 234, 240, 419, 556
MfeI	CAATTG	1 cut(s)	184
MflI	RGATCY	2 cut(s)	125, 513
MhlI	GDGCHC	2 cut(s)	99, 377
MluCI	AATT	5 cut(s)	119, 177, 184, 229, 352
MlyI	GAGTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	581
MslI	CAYNNNNRTG	1 cut(s)	250
MspA1I	CMGCKG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	184
MwoI	GCNNNNNNNGC	7 cut(s)	32, 35, 38, 41, 114, 189, 388
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	8 cut(s)	125, 271, 288, 322, 424, 452, 513, 591
NlaIII	CATG	6 cut(s)	59, 70, 255, 278, 347, 382
NlaIV	GGNNCC	4 cut(s)	19, 191, 376, 515
NmeAIII	GCCGAG	1 cut(s)	565
NspI	RCATGY	1 cut(s)	70
PagI	TCATGA	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	104
PflFI	GACNNNGTC	1 cut(s)	559
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	4 cut(s)	19, 191, 376, 515
PspPI	GGNCC	2 cut(s)	265, 398
PstI	CTGCAG	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	125, 513
PsyI	GACNNNGTC	1 cut(s)	559
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	2 cut(s)	140, 632
RsaNI	GTAC	2 cut(s)	139, 631
RseI	CAYNNNNRTG	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	581
Sau3AI	GATC	8 cut(s)	125, 271, 288, 322, 424, 452, 513, 591
Sau96I	GGNCC	2 cut(s)	265, 398
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	99, 377
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	2 cut(s)	142, 386
SmiMI	CAYNNNNRTG	1 cut(s)	250
Sse9I	AATT	5 cut(s)	119, 177, 184, 229, 352
SstI	GAGCTC	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	143
TasI	AATT	5 cut(s)	119, 177, 184, 229, 352
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TscAI	CASTG	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	234, 240, 345, 419
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	559
XapI	RAATTY	2 cut(s)	177, 229
XceI	RCATGY	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.