Rh7CG478900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012630
Physical Location & Seq
Forward (+)
64317481 .. 64318163
683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG478900.1

Sequence Viewer

Length: 582 bp
ATGTGTGGGGATTTTGGCTTCTCCTACGAGCTTTTCCAATGCAAGGCCTGCAAGTTCAGATCTCAGCACAGGTACTGTAGCAATCTTTACCCAAAAGCAGTGTCCTACAGAATCTGCAATTGGTGCCTCACCCAGAAAGAAGAAACAAAAGAAAAGTCGCAGAATTCTTCAAATTCTTCATCTTCATGCAAAAAAGACCAATCCCATCAAGAACATCTTCATCAGAATCATGATTCCAAGGTCAACAGAATAAAAAAGAATTCACCGAAAGCCAGTCATGATCATCATACACATGGTTCTGGTCTAAGAGGCAGCATGAAGCTTCAGCCAAGTGGCCCTATAAAGAAGCAGAAATCACTTGATCATCATCATAATCAGGTCTCATCATCACCAAGATCTCCGTCTCTGATCAGAAAAAGGATCATCACAAATGGAGCAAAGGAAGAGGCTGAGAAGATTAGGAGGACAAGATCAGAAGAGATATCAAACATAAACAGAATCAATAATCATGGGATCACAAGGCAGGTGTTTAGGAGTAGGGTTAGGAGGTACAAGCTTCTGGATGAAGTTTCAAGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.37

Weight (kDa)

10.0

Isoelectric Point (pI)

60.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 1 - 42 2e-21 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 514
Acc36I ACCTGC 1 cut(s) 514
AccB1I GGYRCC 1 cut(s) 123
AclWI GGATC 2 cut(s) 428, 521
AcsI RAATTY 3 cut(s) 163, 172, 259
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 2 cut(s) 74, 551
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 171, 573
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AluBI AGCT 3 cut(s) 31, 322, 556
AluI AGCT 3 cut(s) 31, 322, 556
Alw26I GTCTC 2 cut(s) 385, 408
AlwI GGATC 2 cut(s) 428, 521
AlwNI CAGNNNCTG 2 cut(s) 75, 114
AoxI GGCC 2 cut(s) 45, 334
ApeKI GCWGC 1 cut(s) 312
ApoI RAATTY 3 cut(s) 163, 172, 259
ArsI GACNNNNNNTTYG 4 cut(s) 86, 118, 140, 172
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 3 cut(s) 121, 255, 381
BanI GGYRCC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 324
BccI CCATC 1 cut(s) 213
BclI TGATCA 3 cut(s) 280, 361, 408
BcoDI GTCTC 2 cut(s) 385, 408
BfmI CTRYAG 2 cut(s) 76, 106
BfuAI ACCTGC 1 cut(s) 514
BglII AGATCT 2 cut(s) 59, 395
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 385
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 568
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 77, 441
BseNI ACTGG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 324
BshFI GGCC 2 cut(s) 47, 336
BshNI GGYRCC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 385, 408
BsmBI CGTCTC 1 cut(s) 408
BsnI GGCC 2 cut(s) 47, 336
Bso31I GGTCTC 1 cut(s) 385
Bsp143I GATC 8 cut(s) 59, 280, 361, 395, 408, 420, 470, 513
BspANI GGCC 2 cut(s) 47, 336
BspCNI CTCAG 2 cut(s) 76, 442
BspHI TCATGA 2 cut(s) 229, 277
BspLI GGNNCC 1 cut(s) 125
BspMI ACCTGC 1 cut(s) 514
BspPI GGATC 2 cut(s) 428, 521
BspT107I GGYRCC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 385
BsrI ACTGG 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 8 cut(s) 59, 280, 361, 395, 408, 420, 470, 513
BssT1I CCWWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 438, 471
BstAPI GCANNNNNTGC 2 cut(s) 48, 123
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 63, 305, 450
BstF5I GGATG 1 cut(s) 568
BstKTI GATC 8 cut(s) 62, 283, 364, 398, 411, 423, 473, 516
BstMAI GTCTC 2 cut(s) 385, 408
BstMBI GATC 8 cut(s) 59, 280, 361, 395, 408, 420, 470, 513
BstMWI GCNNNNNNNGC 2 cut(s) 48, 123
BstSFI CTRYAG 2 cut(s) 76, 106
BstV1I GCAGC 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 59, 395
BstYI RGATCY 2 cut(s) 59, 395
BsuRI GGCC 2 cut(s) 47, 336
BtsCI GGATG 1 cut(s) 568
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 2 cut(s) 75, 114
CciI TCATGA 2 cut(s) 229, 277
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 73, 550
CviAII CATG 6 cut(s) 186, 230, 278, 293, 316, 509
CviJI RGCY 9 cut(s) 18, 31, 47, 272, 322, 328, 336, 449, 556
CviKI_1 RGCY 9 cut(s) 18, 31, 47, 272, 322, 328, 336, 449, 556
CviQI GTAC 2 cut(s) 73, 550
DdeI CTNAG 3 cut(s) 63, 305, 450
DpnI GATC 8 cut(s) 61, 282, 363, 397, 410, 422, 472, 515
DpnII GATC 8 cut(s) 59, 280, 361, 395, 408, 420, 470, 513
Eam1104I CTCTTC 2 cut(s) 438, 471
EarI CTCTTC 2 cut(s) 438, 471
Eco130I CCWWGG 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 47
Eco31I GGTCTC 1 cut(s) 385
Eco32I GATATC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 308
EcoRI GAATTC 2 cut(s) 163, 259
EcoRV GATATC 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 6 cut(s) 189, 233, 281, 296, 319, 512
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 6 cut(s) 185, 229, 277, 292, 315, 508
FbaI TGATCA 3 cut(s) 280, 361, 408
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 313
HaeIII GGCC 2 cut(s) 47, 336
Hin1II CATG 6 cut(s) 189, 233, 281, 296, 319, 512
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 2 cut(s) 320, 554
HinfI GANTC 4 cut(s) 111, 226, 233, 498
HphI GGTGA 3 cut(s) 121, 255, 381
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 5 cut(s) 59, 225, 408, 413, 475
Hpy188III TCNNGA 4 cut(s) 209, 230, 278, 560
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 4 cut(s) 42, 51, 117, 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 123
HpyF3I CTNAG 3 cut(s) 63, 305, 450
Hsp92II CATG 6 cut(s) 189, 233, 281, 296, 319, 512
Ksp22I TGATCA 3 cut(s) 280, 361, 408
Kzo9I GATC 8 cut(s) 59, 280, 361, 395, 408, 420, 470, 513
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 8 cut(s) 55, 61, 146, 285, 286, 362, 509, 545
Lsp1109I GCAGC 1 cut(s) 324
MalI GATC 8 cut(s) 61, 282, 363, 397, 410, 422, 472, 515
MboI GATC 8 cut(s) 59, 280, 361, 395, 408, 420, 470, 513
MboII GAAGA 8 cut(s) 152, 159, 168, 174, 209, 455, 466, 488
MfeI CAATTG 1 cut(s) 118
MflI RGATCY 2 cut(s) 59, 395
MluCI AATT 4 cut(s) 118, 163, 172, 259
MnlI CCTC 5 cut(s) 137, 302, 439, 456, 540
MroXI GAANNNNTTC 1 cut(s) 216
MslI CAYNNNNRTG 2 cut(s) 184, 291
MunI CAATTG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 48, 123
NdeII GATC 8 cut(s) 59, 280, 361, 395, 408, 420, 470, 513
NlaIII CATG 6 cut(s) 189, 233, 281, 296, 319, 512
NlaIV GGNNCC 1 cut(s) 125
PagI TCATGA 2 cut(s) 229, 277
PaqCI CACCTGC 1 cut(s) 514
PceI AGGCCT 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 4 cut(s) 111, 226, 233, 498
PkrI GCNGC 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 335
PstNI CAGNNNCTG 2 cut(s) 75, 114
PsuI RGATCY 2 cut(s) 59, 395
RsaI GTAC 2 cut(s) 74, 551
RsaNI GTAC 2 cut(s) 73, 550
RseI CAYNNNNRTG 2 cut(s) 184, 291
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 8 cut(s) 59, 280, 361, 395, 408, 420, 470, 513
Sau96I GGNCC 1 cut(s) 335
SetI ASST 8 cut(s) 33, 74, 243, 324, 381, 528, 551, 558
SfcI CTRYAG 2 cut(s) 76, 106
SmiMI CAYNNNNRTG 2 cut(s) 184, 291
Sse9I AATT 4 cut(s) 118, 163, 172, 259
SseBI AGGCCT 1 cut(s) 47
StuI AGGCCT 1 cut(s) 47
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 77
TasI AATT 4 cut(s) 118, 163, 172, 259
TfiI GAWTC 4 cut(s) 111, 226, 233, 498
TscAI CASTG 1 cut(s) 105
TseI GCWGC 1 cut(s) 312
TspDTI ATGAA 5 cut(s) 168, 174, 209, 332, 579
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 105
XapI RAATTY 3 cut(s) 163, 172, 259
XmnI GAANNNNTTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.