Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008867

Physical Location & Seq

Genomic Coordinates Reverse (-)

28836497 .. 28838561

Gene Structure 2065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATGAAAACCTCTCTTCTCCAGAGCATGACTCAGAGGTCTCAAAGGAGCTTATTATGATTAGGCCAGAAACTCAGGCTTCCAAAAGAAGGAAGGTGGCTCATCAGAAGACAGTGGTGACTGTGAAGATAGGACCAAATGTGGGGAAGCTAAAGAATGAAGGGCCTCCTTCTGATTTCTGGTCATGGAGGAAATATGGGCAAAAACCAATCAAAGGATCTCCTTATCCAAGGGGGTACTACAGGTGCAGTACATCAAAGGGTTGTTCTGCCAAGAAACAAGTGGAGAGAAGCAAAACTGATGCTTCTGTGCTCATAATCACCTACACTTCTAGCCATAACCATCCAGGTCCTGACGTGACATCCACTACCAAATACCAGAACCCACCACCAAAAGAAGCTCAAATGCAACAGGATAGTGAAGATGATGATCATGATCTTAAGGCTGAAGTGGCGAAAGAGGAAGAACAAGAACCAGAACCAGCACCAGAACCAGAACAAGAACAAGAGCAAGAACAAGAACAAGAAAGGAAAGTAGATGTACAGCAAGAACCAGATCATTTCCACTATATTCAGTCCCCAATTAGATCCTCCCAAGACATTGTGATTTACCAAGAAGACCCTTTCAGCTCTGGGAACCACCTAGAGAAGACCCTATTGGACGAACACCCCCAGTCCCTCTGTTACTCTCAGCTCATGAGCATGAGCTTCTCAACAACACCCAAATCCGAAGAAGAAGAAGATTTCTACGATGAGCTTGAGGAATTGTTACCCACATCTTCCTATTTCCCAAGCTTCATGAGAAGCAATCTTTCCCAGCTAGAAAGGATTCCTTTTGTCCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

283

Amino Acids

32.38

Weight (kDa)

4.92

Isoelectric Point (pI)

69.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	34 - 91	1.2e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39060 FvH4_5g39060
malus_domestica	MD00G1140800.v1.1 MD03G1292900.v1.1
prunus_persica	Prupe.8G265900_v2.0.a1 Prupe.8G265900_v2.0.a1
pyrus_communis	pycom03g23220 pycom11g27360
rosa_chinensis	RchiOBHm_Chr7g0241021 RchiOBHm_Chr7g0241041
rosa_laevigata	RLG00000000603
rosa_multiflora	Rmu_sc0003187.1_g000008
rosa_roxburghii	Rroxscaffold_3G00219310
rosa_rugosa	Rorug07G0341300 Rorug07G0341400 Rorug07G0341500
rosa_samantha	Rh7AG496600 Rh7AG497100 Rh7BG467800 Rh7CG513800 Rh7DG481000
rosa_wichuraiana	Rw0G005810 Rw7G041940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AclWI	GGATC	2 cut(s)	226, 582
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	3 cut(s)	239, 253, 543
AfiI	CCNNNNNNNGG	3 cut(s)	90, 143, 215
AflII	CTTAAG	1 cut(s)	440
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AluBI	AGCT	9 cut(s)	52, 151, 401, 630, 694, 708, 757, 795, 820
AluI	AGCT	9 cut(s)	52, 151, 401, 630, 694, 708, 757, 795, 820
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	2 cut(s)	226, 582
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	65, 164
Asp700I	GAANNNNTTC	1 cut(s)	828
AspS9I	GGNCC	3 cut(s)	134, 164, 350
AsuHPI	GGTGA	2 cut(s)	130, 313
AvaII	GGWCC	2 cut(s)	134, 350
BbsI	GAAGAC	3 cut(s)	116, 624, 656
Bbv12I	GWGCWC	1 cut(s)	315
BccI	CCATC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	348
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	3 cut(s)	333, 644, 821
BfmI	CTRYAG	1 cut(s)	241
BfrI	CTTAAG	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	2 cut(s)	134, 350
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	3 cut(s)	134, 164, 350
BmiI	GGNNCC	1 cut(s)	638
BmrFI	CCNGG	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	667
BpiI	GAAGAC	3 cut(s)	116, 624, 656
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	779
BsaBI	GATNNNNATC	2 cut(s)	429, 435
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 143, 215
Bse1I	ACTGG	1 cut(s)	673
Bse8I	GATNNNNATC	2 cut(s)	429, 435
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	3 cut(s)	10, 343, 362
BseJI	GATNNNNATC	2 cut(s)	429, 435
BseLI	CCNNNNNNNGG	3 cut(s)	90, 143, 215
BseMII	CTCAG	3 cut(s)	48, 89, 704
BseNI	ACTGG	1 cut(s)	673
BseYI	CCCAGC	1 cut(s)	816
BsgI	GTGCAG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	67, 166
BsiHKAI	GWGCWC	1 cut(s)	315
BslFI	GGGAC	3 cut(s)	562, 661, 824
BslI	CCNNNNNNNGG	3 cut(s)	90, 143, 215
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	3 cut(s)	562, 661, 824
BsnI	GGCC	2 cut(s)	67, 166
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	5 cut(s)	218, 430, 436, 556, 587
BspANI	GGCC	2 cut(s)	67, 166
BspCNI	CTCAG	3 cut(s)	47, 88, 703
BspHI	TCATGA	3 cut(s)	433, 696, 798
BspLI	GGNNCC	1 cut(s)	638
BspPI	GGATC	2 cut(s)	226, 582
BspTI	CTTAAG	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	46
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	5 cut(s)	218, 430, 436, 556, 587
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	115, 124
Bst6I	CTCTTC	1 cut(s)	22
BstAFI	CTTAAG	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	541
BstDEI	CTNAG	3 cut(s)	34, 75, 690
BstF5I	GGATG	3 cut(s)	10, 343, 362
BstKTI	GATC	5 cut(s)	221, 433, 439, 559, 590
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	5 cut(s)	218, 430, 436, 556, 587
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	241
BstV2I	GAAGAC	3 cut(s)	116, 624, 656
BstX2I	RGATCY	2 cut(s)	218, 587
BstYI	RGATCY	2 cut(s)	218, 587
BsuRI	GGCC	2 cut(s)	67, 166
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	3 cut(s)	10, 343, 362
BtsIMutI	CAGTG	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	353
CciI	TCATGA	3 cut(s)	433, 696, 798
Cfr13I	GGNCC	3 cut(s)	134, 164, 350
Csp6I	GTAC	3 cut(s)	238, 252, 542
CviAII	CATG	6 cut(s)	29, 186, 434, 697, 703, 799
CviQI	GTAC	3 cut(s)	238, 252, 542
DdeI	CTNAG	3 cut(s)	34, 75, 690
DpnI	GATC	5 cut(s)	220, 432, 438, 558, 589
DpnII	GATC	5 cut(s)	218, 430, 436, 556, 587
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	134, 350
Eco57I	CTGAAG	1 cut(s)	468
EcoO109I	RGGNCCY	2 cut(s)	164, 350
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	6 cut(s)	32, 189, 437, 700, 706, 802
FalI	AAGNNNNNCTT	2 cut(s)	817, 849
FaqI	GGGAC	3 cut(s)	562, 661, 824
FatI	CATG	6 cut(s)	28, 185, 433, 696, 702, 798
FbaI	TGATCA	1 cut(s)	430
FokI	GGATG	3 cut(s)	17, 330, 349
FspBI	CTAG	3 cut(s)	333, 644, 821
GsaI	CCCAGC	1 cut(s)	820
GsuI	CTGGAG	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	67, 166
Hin1II	CATG	6 cut(s)	32, 189, 437, 700, 706, 802
HindIII	AAGCTT	1 cut(s)	793
HinfI	GANTC	2 cut(s)	32, 829
HphI	GGTGA	2 cut(s)	130, 313
Hpy188I	TCNGA	4 cut(s)	37, 108, 175, 730
Hpy188III	TCNNGA	6 cut(s)	23, 353, 434, 697, 799, 846
HpyAV	CCTTC	4 cut(s)	84, 88, 155, 180
HpyCH4III	ACNGT	2 cut(s)	115, 124
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	249, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	3 cut(s)	34, 75, 690
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	6 cut(s)	32, 189, 437, 700, 706, 802
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	218, 430, 436, 556, 587
LmnI	GCTCC	1 cut(s)	49
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	3 cut(s)	333, 644, 821
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	4 cut(s)	118, 358, 683, 768
MalI	GATC	5 cut(s)	220, 432, 438, 558, 589
MboI	GATC	5 cut(s)	218, 430, 436, 556, 587
MflI	RGATCY	2 cut(s)	218, 587
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	582, 764
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	8 cut(s)	23, 31, 177, 183, 454, 601, 689, 754
MroXI	GAANNNNTTC	1 cut(s)	828
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	701
MspCI	CTTAAG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	5 cut(s)	218, 430, 436, 556, 587
NlaIII	CATG	6 cut(s)	32, 189, 437, 700, 706, 802
NlaIV	GGNNCC	1 cut(s)	638
NmuCI	GTSAC	2 cut(s)	118, 358
PagI	TCATGA	3 cut(s)	433, 696, 798
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	1 cut(s)	829
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	816
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	638
PspPI	GGNCC	3 cut(s)	134, 164, 350
PspPPI	RGGWCCY	1 cut(s)	350
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	2 cut(s)	218, 587
RsaI	GTAC	3 cut(s)	239, 253, 543
RsaNI	GTAC	3 cut(s)	238, 252, 542
RseI	CAYNNNNRTG	1 cut(s)	701
SaqAI	TTAA	1 cut(s)	441
Sau3AI	GATC	5 cut(s)	218, 430, 436, 556, 587
Sau96I	GGNCC	3 cut(s)	134, 164, 350
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	241
SinI	GGWCC	2 cut(s)	134, 350
SmiMI	CAYNNNNRTG	1 cut(s)	701
SmlI	CTYRAG	2 cut(s)	440, 758
SmoI	CTYRAG	2 cut(s)	440, 758
Sse9I	AATT	2 cut(s)	582, 764
SspMI	CTAG	3 cut(s)	333, 644, 821
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	115, 124
TaiI	ACGT	1 cut(s)	360
TasI	AATT	2 cut(s)	582, 764
TatI	WGTACW	2 cut(s)	251, 541
TfiI	GAWTC	1 cut(s)	829
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	2 cut(s)	118, 358
Tsp45I	GTSAC	2 cut(s)	118, 358
TspDTI	ATGAA	3 cut(s)	21, 174, 787
TspRI	CASTG	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	134, 350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	3 cut(s)	333, 644, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.