Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008867

Physical Location & Seq

Genomic Coordinates Reverse (-)

68635913 .. 68637898

Gene Structure 1986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG481000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTATAGGAAGGTGGCTCATCAGAAGACTGTGGTTACAGTGAAGATAGGACCAAATGTGGGGAAGCTAAAGAATGAAGGGCCTCCTTCTGATTTCTGGTCATGGAGGAAATATGGGCAAAAACCTATCAAAGGATCTCCTTATCCAAGGGGGTACTACAGGTGCAGTACATCAAAGGGTTGTTCTGCCAAGAAACAAGTGGAGAGAAGCAAAACTGATGCTTCTGTGCTCATAATCACCTACACTTCCAGCCATAACCATCCAGGTCCTGATGTGACCTCCACCACTAAAAACCAGAGCCCACCACCAAAAGAAGCCCAAATGCAACCCAATAGTGAAGATGATGATCATGATCATACAGCTGAAGTGCCCAAAGAGGATGAGCCAGAGCCAGAGCCAGATCAAGATGAAGAACAAGAACAAGAAAGGAAAGTAGATGAACAGCAAGAACAAGATCATTTCCACTATATTCAGTCCCCAATTAGATCCTCCCAAGACATTGTGATTTACCAAGAAGAAGACCCTTTCAGCTCTGGGAACCACCTAGAGAAAACCCTATTGGATGAACACCCACATCCCCTCTGTTACTCTCAGCTCCTGAGCTTCTCATCAACACCCAAATCCGAAGAAGAAGAAGATTTCTACGATGAGCTTGAAGAATTGTTACCCACATCTTCATATTTCCCAAGCTTCATGAGAAGCAATCTTTCCCAGCTTGAAAGGGAATCTTTTGTCCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

247

Amino Acids

28.39

Weight (kDa)

4.94

Isoelectric Point (pI)

61.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	31 - 88	1.1e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39060 FvH4_5g39060
malus_domestica	MD00G1140800.v1.1 MD03G1292900.v1.1
prunus_persica	Prupe.8G265900_v2.0.a1 Prupe.8G265900_v2.0.a1
pyrus_communis	pycom03g23220 pycom11g27360
rosa_chinensis	RchiOBHm_Chr7g0241021 RchiOBHm_Chr7g0241041
rosa_laevigata	RLG00000000603
rosa_multiflora	Rmu_sc0003187.1_g000008
rosa_roxburghii	Rroxscaffold_3G00219310
rosa_rugosa	Rorug07G0341300 Rorug07G0341400 Rorug07G0341500
rosa_samantha	Rh7AG496600 Rh7AG497100 Rh7BG467800 Rh7CG513800 Rh7DG481000
rosa_wichuraiana	Rw0G005810 Rw7G041940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	142, 480
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	155, 169
AfiI	CCNNNNNNNGG	2 cut(s)	59, 131
AgsI	TTSAA	2 cut(s)	656, 719
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	542, 574
AluBI	AGCT	8 cut(s)	67, 362, 531, 595, 603, 652, 690, 715
AluI	AGCT	8 cut(s)	67, 362, 531, 595, 603, 652, 690, 715
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	142, 480
AlwNI	CAGNNNCTG	2 cut(s)	269, 598
AoxI	GGCC	1 cut(s)	80
AspS9I	GGNCC	3 cut(s)	50, 80, 266
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	50, 266
BaeGI	GKGCMC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	302
BarI	GAAGNNNNNNTAC	2 cut(s)	648, 680
BbsI	GAAGAC	2 cut(s)	32, 525
Bbv12I	GWGCWC	1 cut(s)	231
BccI	CCATC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	2 cut(s)	346, 352
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	2 cut(s)	50, 266
BmgT120I	GGNCC	3 cut(s)	50, 80, 266
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	2 cut(s)	32, 525
Bpu10I	CCTNAGC	1 cut(s)	599
BsaBI	GATNNNNATC	2 cut(s)	345, 351
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 131
Bse8I	GATNNNNATC	2 cut(s)	345, 351
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	4 cut(s)	259, 385, 568, 574
BseJI	GATNNNNATC	2 cut(s)	345, 351
BseLI	CCNNNNNNNGG	2 cut(s)	59, 131
BseMII	CTCAG	2 cut(s)	590, 605
BseSI	GKGCMC	1 cut(s)	372
BseYI	CCCAGC	1 cut(s)	711
BsgI	GTGCAG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	231
BslFI	GGGAC	2 cut(s)	460, 719
BslI	CCNNNNNNNGG	2 cut(s)	59, 131
BsmFI	GGGAC	2 cut(s)	460, 719
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	3 cut(s)	231, 302, 372
Bsp143I	GATC	6 cut(s)	134, 346, 352, 400, 454, 485
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	591, 604
BspHI	TCATGA	2 cut(s)	349, 693
BspLI	GGNNCC	1 cut(s)	539
BspPI	GGATC	2 cut(s)	142, 480
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	6 cut(s)	134, 346, 352, 400, 454, 485
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	31, 40
BstDEI	CTNAG	2 cut(s)	591, 599
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	4 cut(s)	259, 385, 568, 574
BstKTI	GATC	6 cut(s)	137, 349, 355, 403, 457, 488
BstMBI	GATC	6 cut(s)	134, 346, 352, 400, 454, 485
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	372
BstV2I	GAAGAC	2 cut(s)	32, 525
BstX2I	RGATCY	2 cut(s)	134, 485
BstYI	RGATCY	2 cut(s)	134, 485
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	4 cut(s)	259, 385, 568, 574
BtsIMutI	CAGTG	1 cut(s)	45
CaiI	CAGNNNCTG	2 cut(s)	269, 598
CciI	TCATGA	2 cut(s)	349, 693
Cfr13I	GGNCC	3 cut(s)	50, 80, 266
Csp6I	GTAC	2 cut(s)	154, 168
CviAII	CATG	3 cut(s)	102, 350, 694
CviQI	GTAC	2 cut(s)	154, 168
DdeI	CTNAG	2 cut(s)	591, 599
DpnI	GATC	6 cut(s)	136, 348, 354, 402, 456, 487
DpnII	GATC	6 cut(s)	134, 346, 352, 400, 454, 485
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	50, 266
Eco57I	CTGAAG	1 cut(s)	384
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoO109I	RGGNCCY	2 cut(s)	80, 266
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	3 cut(s)	105, 353, 697
FalI	AAGNNNNNCTT	2 cut(s)	712, 744
FaqI	GGGAC	2 cut(s)	460, 719
FatI	CATG	3 cut(s)	101, 349, 693
FbaI	TGATCA	2 cut(s)	346, 352
FokI	GGATG	4 cut(s)	246, 392, 561, 575
FriOI	GRGCYC	1 cut(s)	302
FspBI	CTAG	1 cut(s)	545
GsaI	CCCAGC	1 cut(s)	715
HaeIII	GGCC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	105, 353, 697
HindIII	AAGCTT	1 cut(s)	688
HinfI	GANTC	1 cut(s)	725
HphI	GGTGA	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	24, 91, 625
Hpy188III	TCNNGA	6 cut(s)	269, 350, 404, 598, 694, 741
HpyAV	CCTTC	3 cut(s)	4, 71, 96
HpyCH4III	ACNGT	2 cut(s)	31, 40
HpyCH4V	TGCA	2 cut(s)	165, 325
HpyF3I	CTNAG	2 cut(s)	591, 599
Hsp92II	CATG	3 cut(s)	105, 353, 697
Ksp22I	TGATCA	2 cut(s)	346, 352
Kzo9I	GATC	6 cut(s)	134, 346, 352, 400, 454, 485
LmnI	GCTCC	1 cut(s)	600
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	545
MaeIII	GTNAC	4 cut(s)	34, 274, 584, 663
MalI	GATC	6 cut(s)	136, 348, 354, 402, 456, 487
MboI	GATC	6 cut(s)	134, 346, 352, 400, 454, 485
MflI	RGATCY	2 cut(s)	134, 485
MhlI	GDGCHC	3 cut(s)	231, 302, 372
MluCI	AATT	2 cut(s)	480, 659
MnlI	CCTC	6 cut(s)	93, 99, 289, 370, 499, 590
MspA1I	CMGCKG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
NdeII	GATC	6 cut(s)	134, 346, 352, 400, 454, 485
NlaIII	CATG	3 cut(s)	105, 353, 697
NlaIV	GGNNCC	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	274
PagI	TCATGA	2 cut(s)	349, 693
PfeI	GAWTC	1 cut(s)	725
PpuMI	RGGWCCY	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	3 cut(s)	50, 80, 266
PspPPI	RGGWCCY	1 cut(s)	266
PstNI	CAGNNNCTG	2 cut(s)	269, 598
PsuI	RGATCY	2 cut(s)	134, 485
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	155, 169
RsaNI	GTAC	2 cut(s)	154, 168
Sau3AI	GATC	6 cut(s)	134, 346, 352, 400, 454, 485
Sau96I	GGNCC	3 cut(s)	50, 80, 266
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	3 cut(s)	231, 302, 372
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	2 cut(s)	50, 266
Sse9I	AATT	2 cut(s)	480, 659
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	31, 40
TasI	AATT	2 cut(s)	480, 659
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	725
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	6 cut(s)	90, 423, 453, 579, 666, 682
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	2 cut(s)	50, 266
XagI	CCTNNNNNAGG	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.