Rorug07G0341500
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
37629499 .. 37634004
4506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0341500.1

Sequence Viewer

Length: 963 bp
ATGGTTGGGATGATAAGTTCAGGTGATCTCCAGTCACAGTGGTTCTCTCTACCCAAAGTGGGTCGCTCTGCAATTCCAAGCCCCGTTCATCTCATTGCCTCTGCCACTTCTCTCCGCCTCACCCACCACTTCCGCCTTCATTCCCTTCTCCGCTCCTATTTTCAGAAACTTGCTCATATCAGTCCCTTGCATAAACTGAAGGAAGGGTTTAACACTATACCATTGCCAACTCATACTTCAATTTGCTTTGCTTTCTTTAATGGAAGAGACAACAGCAATGATCTCACTAATGAAGACATGCCCAACTCTAAAATGTCCACTAGAAACTCCTTCACTGGAAGACAATGGACCAATCTTCTCCTTGCTCTTAACATCATAGTTTTTATCGCGCAAGTTGGGACACAAAATGATTTAATCCTATGGGGTGCCAAGATAAATAGGCTTATCGATAAAGGGCAATTGTGGAGGCTCGTCACGAGTTCCTTTTTGCACGCAAATGTTGGCCACCTCTTGGTTAATTGCTATTCTTTGAATAATGTTGGCCCTACCATGGAGAGGCTCAGTGGTTCGAAGAGATTTCTTGCGATTTACTTCACCTCTGCAATTGCAAGTTCAGCAATGAGTTATTGGTGCAGCCAGGCACCTGCGGTTGGTGCATCAGGAGCAGTCTTCGGCTTAGTGGGATCTCTTGCAGTATTTGTCATGAGGCATAGAGGTCTGGTTGGAGGTGGCAAAGAAGATTTAAAGCACATAGCATATGTAATTGTCCTAAATATGTCTATTGGGCTGTTCTCCAAAGGCATTGACAACTGGGGCCATCTGGGAGGCTTGCTTGGTGGAGCTGCCACAGCATGGCTTTTAGGACCTGCCTGGAAGTACGAATTTTCTTCCACTGATAGACGAAGGATCTTTGCTGACAAGGCTCCTATTTTCTACCTCATCAACAGGAAAACTAGATCGTAG

Protein Analysis

320

Amino Acids

35.31

Weight (kDa)

10.2

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 151 - 288 8.1e-38 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 652
Acc36I ACCTGC 2 cut(s) 652, 874
AccB1I GGYRCC 2 cut(s) 425, 640
AccB7I CCANNNNNTGG 2 cut(s) 511, 852
AccBSI CCGCTC 1 cut(s) 153
AccII CGCG 1 cut(s) 389
AciI CCGC 4 cut(s) 115, 133, 151, 647
AclWI GGATC 2 cut(s) 691, 914
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 878
AfiI CCNNNNNNNGG 6 cut(s) 59, 511, 550, 555, 650, 852
AgsI TTSAA 2 cut(s) 240, 532
AjnI CCWGG 2 cut(s) 636, 869
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 1 cut(s) 842
AluI AGCT 1 cut(s) 842
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 2 cut(s) 691, 914
AoxI GGCC 3 cut(s) 502, 541, 814
ApeKI GCWGC 2 cut(s) 633, 842
ApoI RAATTY 1 cut(s) 881
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 4 cut(s) 348, 542, 814, 863
AsuHPI GGTGA 3 cut(s) 35, 112, 586
AsuII TTCGAA 1 cut(s) 569
AvaII GGWCC 2 cut(s) 348, 863
BalI TGGCCA 1 cut(s) 504
BanI GGYRCC 2 cut(s) 425, 640
BauI CACGAG 1 cut(s) 475
BbsI GAAGAC 3 cut(s) 300, 346, 661
BbvI GCAGC 2 cut(s) 645, 829
BccI CCATC 1 cut(s) 825
BciT130I CCWGG 2 cut(s) 638, 871
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 2 cut(s) 321, 954
BfuAI ACCTGC 2 cut(s) 652, 874
BisI GCNGC 2 cut(s) 634, 843
BlsI GCNGC 2 cut(s) 635, 844
Bme1390I CCNGG 2 cut(s) 638, 871
Bme18I GGWCC 2 cut(s) 348, 863
BmgT120I GGNCC 4 cut(s) 348, 542, 814, 863
BmiI GGNNCC 4 cut(s) 427, 642, 815, 924
BmrFI CCNGG 2 cut(s) 638, 871
BmrI ACTGGG 1 cut(s) 820
BmsI GCATC 1 cut(s) 665
BmuI ACTGGG 1 cut(s) 820
BpiI GAAGAC 3 cut(s) 300, 346, 661
BpmI CTGGAG 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 569
Bsa29I ATCGAT 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 549
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 511, 550, 555, 650, 852
Bse1I ACTGG 3 cut(s) 31, 340, 815
Bse3DI GCAATG 4 cut(s) 93, 221, 283, 624
BseBI CCWGG 2 cut(s) 638, 871
BseCI ATCGAT 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 6 cut(s) 59, 511, 550, 555, 650, 852
BseMI GCAATG 4 cut(s) 93, 221, 283, 624
BseMII CTCAG 1 cut(s) 574
BseNI ACTGG 3 cut(s) 31, 340, 815
BseXI GCAGC 2 cut(s) 645, 829
BsgI GTGCAG 1 cut(s) 652
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 3 cut(s) 504, 543, 816
BshNI GGYRCC 2 cut(s) 425, 640
BshVI ATCGAT 1 cut(s) 447
BslFI GGGAC 2 cut(s) 168, 412
BslI CCNNNNNNNGG 6 cut(s) 59, 511, 550, 555, 650, 852
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 2 cut(s) 168, 412
BsnI GGCC 3 cut(s) 504, 543, 816
Bsp119I TTCGAA 1 cut(s) 569
Bsp143I GATC 5 cut(s) 25, 280, 683, 906, 956
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 4 cut(s) 115, 133, 151, 647
BspANI GGCC 3 cut(s) 504, 543, 816
BspCNI CTCAG 1 cut(s) 573
BspDI ATCGAT 1 cut(s) 447
BspFNI CGCG 1 cut(s) 389
BspHI TCATGA 1 cut(s) 702
BspLI GGNNCC 4 cut(s) 427, 642, 815, 924
BspMI ACCTGC 2 cut(s) 652, 874
BspPI GGATC 2 cut(s) 691, 914
BspT104I TTCGAA 1 cut(s) 569
BspT107I GGYRCC 2 cut(s) 425, 640
BsrBI CCGCTC 1 cut(s) 153
BsrDI GCAATG 4 cut(s) 93, 221, 283, 624
BsrI ACTGG 3 cut(s) 31, 340, 815
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 5 cut(s) 25, 280, 683, 906, 956
BssSI CACGAG 1 cut(s) 475
BssT1I CCWWGG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 475
Bst2UI CCWGG 2 cut(s) 638, 871
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 259, 566
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 2 cut(s) 492, 830
BstDEI CTNAG 2 cut(s) 560, 676
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 389
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 5 cut(s) 28, 283, 686, 909, 959
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 5 cut(s) 25, 280, 683, 906, 956
BstMWI GCNNNNNNNGC 5 cut(s) 614, 653, 662, 848, 920
BstNI CCWGG 2 cut(s) 638, 871
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 636, 869
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 2 cut(s) 645, 829
BstV2I GAAGAC 3 cut(s) 300, 346, 661
BstX2I RGATCY 2 cut(s) 683, 906
BstYI RGATCY 2 cut(s) 683, 906
Bsu15I ATCGAT 1 cut(s) 447
BsuRI GGCC 3 cut(s) 504, 543, 816
BsuTUI ATCGAT 1 cut(s) 447
BtgI CCRYGG 1 cut(s) 549
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 4 cut(s) 44, 333, 568, 891
BveI ACCTGC 2 cut(s) 652, 874
Cac8I GCNNGC 2 cut(s) 492, 830
CciI TCATGA 1 cut(s) 702
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 4 cut(s) 348, 542, 814, 863
ClaI ATCGAT 1 cut(s) 447
Csp6I GTAC 1 cut(s) 877
CviAII CATG 4 cut(s) 298, 550, 703, 852
CviQI GTAC 1 cut(s) 877
DdeI CTNAG 2 cut(s) 560, 676
DpnI GATC 5 cut(s) 27, 282, 685, 908, 958
DpnII GATC 5 cut(s) 25, 280, 683, 906, 956
DraI TTTAAA 1 cut(s) 744
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 2 cut(s) 259, 566
EarI CTCTTC 2 cut(s) 259, 566
EciI GGCGGA 2 cut(s) 104, 122
Eco130I CCWWGG 1 cut(s) 549
Eco47I GGWCC 2 cut(s) 348, 863
Eco57I CTGAAG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 863
EcoRII CCWGG 2 cut(s) 636, 869
EcoT14I CCWWGG 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 4 cut(s) 301, 553, 706, 855
FaqI GGGAC 2 cut(s) 168, 412
FatI CATG 4 cut(s) 297, 549, 702, 851
FauNDI CATATG 1 cut(s) 757
Fnu4HI GCNGC 2 cut(s) 634, 843
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 634, 843
FspBI CTAG 2 cut(s) 321, 954
GlaI GCGC 1 cut(s) 390
GluI GCNGC 2 cut(s) 634, 843
GsuI CTGGAG 1 cut(s) 14
HaeIII GGCC 3 cut(s) 504, 543, 816
HhaI GCGC 1 cut(s) 391
Hin1II CATG 4 cut(s) 301, 553, 706, 855
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HphI GGTGA 3 cut(s) 35, 112, 586
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 3 cut(s) 475, 660, 703
Hpy8I GTNNAC 1 cut(s) 318
HpyAV CCTTC 6 cut(s) 146, 155, 193, 197, 340, 897
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 8 cut(s) 71, 190, 490, 602, 608, 633, 656, 692
HpyF10VI GCNNNNNNNGC 5 cut(s) 614, 653, 662, 848, 920
HpyF3I CTNAG 2 cut(s) 560, 676
Hsp92II CATG 4 cut(s) 301, 553, 706, 855
HspAI GCGC 1 cut(s) 389
Kzo9I GATC 5 cut(s) 25, 280, 683, 906, 956
LmnI GCTCC 4 cut(s) 158, 662, 839, 928
Lsp1109I GCAGC 2 cut(s) 645, 829
LweI GCATC 1 cut(s) 665
MaeI CTAG 2 cut(s) 321, 954
MaeIII GTNAC 2 cut(s) 33, 472
MalI GATC 5 cut(s) 27, 282, 685, 908, 958
MbiI CCGCTC 1 cut(s) 153
MboI GATC 5 cut(s) 25, 280, 683, 906, 956
MboII GAAGA 8 cut(s) 276, 305, 347, 351, 583, 661, 749, 879
MfeI CAATTG 2 cut(s) 458, 603
MflI RGATCY 2 cut(s) 683, 906
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 7 cut(s) 72, 240, 458, 517, 603, 762, 881
MluNI TGGCCA 1 cut(s) 504
MmeI TCCRAC 1 cut(s) 703
Mox20I TGGCCA 1 cut(s) 504
MscI TGGCCA 1 cut(s) 504
MseI TTAA 6 cut(s) 210, 258, 369, 413, 516, 743
MslI CAYNNNNRTG 1 cut(s) 495
Msp20I TGGCCA 1 cut(s) 504
MspR9I CCNGG 2 cut(s) 638, 871
MunI CAATTG 2 cut(s) 458, 603
MvaI CCWGG 2 cut(s) 638, 871
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 5 cut(s) 614, 653, 662, 848, 920
NcoI CCATGG 1 cut(s) 549
NdeI CATATG 1 cut(s) 757
NdeII GATC 5 cut(s) 25, 280, 683, 906, 956
NlaIII CATG 4 cut(s) 301, 553, 706, 855
NlaIV GGNNCC 4 cut(s) 427, 642, 815, 924
NmuCI GTSAC 2 cut(s) 33, 472
NspI RCATGY 1 cut(s) 301
NspV TTCGAA 1 cut(s) 569
PagI TCATGA 1 cut(s) 702
PaqCI CACCTGC 1 cut(s) 652
PflMI CCANNNNNTGG 2 cut(s) 511, 852
PkrI GCNGC 2 cut(s) 635, 844
PpuMI RGGWCCY 1 cut(s) 863
Psp5II RGGWCCY 1 cut(s) 863
Psp6I CCWGG 2 cut(s) 636, 869
PspGI CCWGG 2 cut(s) 636, 869
PspN4I GGNNCC 4 cut(s) 427, 642, 815, 924
PspPI GGNCC 4 cut(s) 348, 542, 814, 863
PspPPI RGGWCCY 1 cut(s) 863
PsuI RGATCY 2 cut(s) 683, 906
RsaI GTAC 1 cut(s) 878
RsaNI GTAC 1 cut(s) 877
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 6 cut(s) 210, 258, 369, 413, 516, 743
SatI GCNGC 2 cut(s) 634, 843
Sau3AI GATC 5 cut(s) 25, 280, 683, 906, 956
Sau96I GGNCC 4 cut(s) 348, 542, 814, 863
ScrFI CCNGG 2 cut(s) 638, 871
SetI ASST 9 cut(s) 25, 510, 599, 646, 718, 730, 844, 868, 939
SfaNI GCATC 1 cut(s) 665
SfuI TTCGAA 1 cut(s) 569
SinI GGWCC 2 cut(s) 348, 863
SmiMI CAYNNNNRTG 1 cut(s) 495
Sse9I AATT 7 cut(s) 72, 240, 458, 517, 603, 762, 881
SsiI CCGC 4 cut(s) 115, 133, 151, 647
SspMI CTAG 2 cut(s) 321, 954
StyD4I CCNGG 2 cut(s) 636, 869
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 447, 569
TasI AATT 7 cut(s) 72, 240, 458, 517, 603, 762, 881
Tru1I TTAA 6 cut(s) 210, 258, 369, 413, 516, 743
Tru9I TTAA 6 cut(s) 210, 258, 369, 413, 516, 743
TscAI CASTG 4 cut(s) 44, 340, 568, 898
TseFI GTSAC 2 cut(s) 33, 472
TseI GCWGC 2 cut(s) 633, 842
Tsp45I GTSAC 2 cut(s) 33, 472
TspDTI ATGAA 3 cut(s) 77, 128, 306
TspRI CASTG 4 cut(s) 44, 340, 568, 898
Van91I CCANNNNNTGG 2 cut(s) 511, 852
VpaK11BI GGWCC 2 cut(s) 348, 863
XapI RAATTY 1 cut(s) 881
XceI RCATGY 1 cut(s) 301
XspI CTAG 2 cut(s) 321, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.