Rmu_sc0007663.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007663.1
OG0000220
Physical Location & Seq
Reverse (-)
46515 .. 47411
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007663.1_g000010.1.cds

Sequence Viewer

Length: 897 bp
ctggagatcaaaacagaggtgatagcatggataaagataaaagattctattaagcaagaaaaggcagctgttcaagatgatattagagaagaactccgcaatgattatcttggcaatcaaacaagtctgtacaatgacgatgacgacaatgatgatgatgatgatggatttcagtatccaccagacatgcaccttacaaaacgacaagattatcgtgctacagtaagacgatcaaccgtagatcgtgataagaactctcagtttagtagaagtgcaagatttcaatttccaaaacaatcgagaggcggtagtagctgtcaacaaccgcaacaagttgatcgatcaaaaacctatcggtactcatttcctgagcctccagtagcaatgccatcaaaagatagtcgatcaaaacaaagcacaattaaatcattactaaaaagtggtagagaactattggcaacaatggtgtccaaataccacatatatgatgttatcccttttaacaaagctgattctccacatttccaaaacatgttgactacagctggaagcggaacaggtggtggaggtgaaagatatgaatatggacaatcttctgtggatggtggattccaatttacctgtggaggtaattttgatcatgccacccaagatgaagaccacggagtgagaacagctggtcatggtgctcaagagaagacccgatataggaggaggactagaggtgcaactgatgatcaaagaaccccatctgatgtttcttcaattgccttcagttttgactctatcagtttaggcacagagcgcagtgggacctcaaatgaatctcatgaaagcaacaatcaatttggttatgatgcttatggatataatcaatatggagaagtatatgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

298

Amino Acids

33.68

Weight (kDa)

5.58

Isoelectric Point (pI)

54.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 97, 306, 326, 552
AcuI CTGAAG 1 cut(s) 757
AdeI CACNNNGTG 1 cut(s) 667
AfaI GTAC 2 cut(s) 131, 359
AfiI CCNNNNNNNGG 1 cut(s) 708
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 3 cut(s) 74, 284, 765
AluBI AGCT 5 cut(s) 68, 315, 509, 545, 677
AluI AGCT 5 cut(s) 68, 315, 509, 545, 677
Alw21I GWGCWC 1 cut(s) 691
ApeKI GCWGC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 807
AspS9I GGNCC 1 cut(s) 813
AsuHPI GGTGA 2 cut(s) 31, 581
AvaII GGWCC 1 cut(s) 813
BbsI GAAGAC 2 cut(s) 663, 704
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 1 cut(s) 77
BccI CCATC 4 cut(s) 158, 397, 596, 757
BciVI GTATCC 1 cut(s) 186
BclI TGATCA 2 cut(s) 637, 736
BfaI CTAG 1 cut(s) 720
BfmI CTRYAG 2 cut(s) 219, 540
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 813
BmgT120I GGNCC 1 cut(s) 813
BmiI GGNNCC 1 cut(s) 814
BmsI GCATC 1 cut(s) 847
BpiI GAAGAC 2 cut(s) 663, 704
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpmI CTGGAG 2 cut(s) 23, 360
Bpu10I CCTNAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 675
Bsa29I ATCGAT 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 661
Bsc4I CCNNNNNNNGG 1 cut(s) 708
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 2 cut(s) 106, 390
BseCI ATCGAT 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 661
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 1 cut(s) 708
BseMI GCAATG 2 cut(s) 106, 390
BseMII CTCAG 2 cut(s) 272, 360
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 727
BseXI GCAGC 1 cut(s) 77
BshVI ATCGAT 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 691
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 1 cut(s) 708
BsmFI GGGAC 1 cut(s) 826
Bsp1286I GDGCHC 1 cut(s) 691
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 8 cut(s) 6, 230, 241, 337, 341, 404, 637, 736
BspACI CCGC 4 cut(s) 97, 306, 326, 552
BspCNI CTCAG 2 cut(s) 271, 361
BspDI ATCGAT 1 cut(s) 340
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 1 cut(s) 814
BsrDI GCAATG 2 cut(s) 106, 390
BsrGI TGTACA 1 cut(s) 129
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 661
BssMI GATC 8 cut(s) 6, 230, 241, 337, 341, 404, 637, 736
Bst4CI ACNGT 2 cut(s) 223, 238
BstAUI TGTACA 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 258, 369
BstDSI CCRYGG 1 cut(s) 661
BstF5I GGATG 1 cut(s) 607
BstHHI GCGC 1 cut(s) 807
BstKTI GATC 8 cut(s) 9, 233, 244, 340, 344, 407, 640, 739
BstMBI GATC 8 cut(s) 6, 230, 241, 337, 341, 404, 637, 736
BstMWI GCNNNNNNNGC 2 cut(s) 312, 804
BstNSI RCATGY 2 cut(s) 190, 535
BstSFI CTRYAG 2 cut(s) 219, 540
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 2 cut(s) 663, 704
Bsu15I ATCGAT 1 cut(s) 340
BsuI GTATCC 1 cut(s) 186
BsuTUI ATCGAT 1 cut(s) 340
BtgI CCRYGG 1 cut(s) 661
BtsCI GGATG 1 cut(s) 607
BtsI GCAGTG 1 cut(s) 814
BtsIMutI CAGTG 1 cut(s) 814
CciI TCATGA 1 cut(s) 829
CfoI GCGC 1 cut(s) 807
Cfr13I GGNCC 1 cut(s) 813
ClaI ATCGAT 1 cut(s) 340
Csp6I GTAC 2 cut(s) 130, 358
CviAII CATG 6 cut(s) 27, 187, 532, 641, 683, 830
CviJI RGCY 6 cut(s) 68, 315, 373, 509, 545, 677
CviKI_1 RGCY 6 cut(s) 68, 315, 373, 509, 545, 677
CviQI GTAC 2 cut(s) 130, 358
DdeI CTNAG 2 cut(s) 258, 369
DpnI GATC 8 cut(s) 8, 232, 243, 339, 343, 406, 639, 738
DpnII GATC 8 cut(s) 6, 230, 241, 337, 341, 404, 637, 736
DraIII CACNNNGTG 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 813
Eco57I CTGAAG 1 cut(s) 757
EcoO109I RGGNCCY 1 cut(s) 813
FaeI CATG 6 cut(s) 30, 190, 535, 644, 686, 833
FaqI GGGAC 1 cut(s) 826
FatI CATG 6 cut(s) 26, 186, 531, 640, 682, 829
FbaI TGATCA 2 cut(s) 637, 736
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 614
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 720
GlaI GCGC 1 cut(s) 806
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 2 cut(s) 23, 360
HhaI GCGC 1 cut(s) 807
Hin1II CATG 6 cut(s) 30, 190, 535, 644, 686, 833
Hin6I GCGC 1 cut(s) 805
HinP1I GCGC 1 cut(s) 805
HincII GTYRAC 2 cut(s) 320, 537
HindII GTYRAC 2 cut(s) 320, 537
HinfI GANTC 5 cut(s) 44, 512, 609, 782, 824
HphI GGTGA 2 cut(s) 31, 581
Hpy166II GTNNAC 2 cut(s) 320, 537
Hpy188I TCNGA 1 cut(s) 754
Hpy188III TCNNGA 6 cut(s) 74, 245, 300, 368, 692, 830
Hpy8I GTNNAC 2 cut(s) 320, 537
HpyAV CCTTC 1 cut(s) 781
HpyCH4III ACNGT 2 cut(s) 223, 238
HpyCH4V TGCA 3 cut(s) 190, 275, 728
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 804
HpyF3I CTNAG 2 cut(s) 258, 369
Hsp92II CATG 6 cut(s) 30, 190, 535, 644, 686, 833
HspAI GCGC 1 cut(s) 805
Ksp22I TGATCA 2 cut(s) 637, 736
Kzo9I GATC 8 cut(s) 6, 230, 241, 337, 341, 404, 637, 736
LpnPI CCDG 7 cut(s) 195, 381, 390, 531, 543, 634, 663
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 847
MaeI CTAG 1 cut(s) 720
MalI GATC 8 cut(s) 8, 232, 243, 339, 343, 406, 639, 738
MboI GATC 8 cut(s) 6, 230, 241, 337, 341, 404, 637, 736
MboII GAAGA 5 cut(s) 101, 585, 668, 709, 753
MfeI CAATTG 1 cut(s) 765
MhlI GDGCHC 1 cut(s) 691
MluCI AATT 6 cut(s) 284, 420, 614, 631, 765, 845
MlyI GAGTC 1 cut(s) 776
MnlI CCTC 9 cut(s) 10, 296, 384, 560, 620, 705, 708, 716, 826
MseI TTAA 3 cut(s) 51, 423, 501
MslI CAYNNNNRTG 1 cut(s) 483
MspA1I CMGCKG 3 cut(s) 68, 545, 677
MunI CAATTG 1 cut(s) 765
MwoI GCNNNNNNNGC 2 cut(s) 312, 804
NdeII GATC 8 cut(s) 6, 230, 241, 337, 341, 404, 637, 736
NlaIII CATG 6 cut(s) 30, 190, 535, 644, 686, 833
NlaIV GGNNCC 1 cut(s) 814
NspI RCATGY 2 cut(s) 190, 535
PagI TCATGA 1 cut(s) 829
PciI ACATGT 1 cut(s) 531
PfeI GAWTC 4 cut(s) 44, 512, 609, 824
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 776
PpsI GAGTC 1 cut(s) 776
PpuMI RGGWCCY 1 cut(s) 813
PscI ACATGT 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 813
PspN4I GGNNCC 1 cut(s) 814
PspPI GGNCC 1 cut(s) 813
PspPPI RGGWCCY 1 cut(s) 813
PvuII CAGCTG 3 cut(s) 68, 545, 677
RsaI GTAC 2 cut(s) 131, 359
RsaNI GTAC 2 cut(s) 130, 358
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 3 cut(s) 51, 423, 501
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 8 cut(s) 6, 230, 241, 337, 341, 404, 637, 736
Sau96I GGNCC 1 cut(s) 813
SchI GAGTC 1 cut(s) 776
SduI GDGCHC 1 cut(s) 691
SfaNI GCATC 1 cut(s) 847
SfcI CTRYAG 2 cut(s) 219, 540
SinI GGWCC 1 cut(s) 813
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 690
SmoI CTYRAG 1 cut(s) 690
Sse9I AATT 6 cut(s) 284, 420, 614, 631, 765, 845
SsiI CCGC 4 cut(s) 97, 306, 326, 552
SspMI CTAG 1 cut(s) 720
TaaI ACNGT 2 cut(s) 223, 238
TaqI TCGA 3 cut(s) 299, 340, 403
TasI AATT 6 cut(s) 284, 420, 614, 631, 765, 845
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 4 cut(s) 44, 512, 609, 824
Tru1I TTAA 3 cut(s) 51, 423, 501
Tru9I TTAA 3 cut(s) 51, 423, 501
TscAI CASTG 1 cut(s) 814
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 4 cut(s) 594, 669, 837, 846
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 1 cut(s) 814
VpaK11BI GGWCC 1 cut(s) 813
XceI RCATGY 2 cut(s) 190, 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XspI CTAG 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.