RLG00000003609

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000220
Physical Location & Seq
Forward (+)
50677861 .. 50678483
623 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003609

Sequence Viewer

Length: 435 bp
ATGGGGTGTTGGCTGATCGGATCTGATTTGGAGGAGATCGATATGGCAGTGATGGTCGTGAAGACTGGAGGGCTAAAGTTGGTGGTGGTAACGCCGCCAATCCGAGTGCGAGTCTTCTCGCATTTTTCATCGTCTACAGGCAAGAACTTCAAGCCGCGGTGTTTCTTTACCTGGGTTGTGGCTTGTATTGCCTCTGGTGGTGACAACGGCAGCGTGGGAGATGGTGGTAGGTGCTGGTGTGTTTCTTCTATTTCTGACTTCAGAGGCGCTGGTAGGCCAATGATGGCGGCGTGGAAGATGTTCACTAAGCCTCTAAGGTTTGTTCTAGTGGCTCTTGGGGGGTCTGGGCTCTATGGAGCTTGGGCCTTGAGGATTGTTACTCATTCTCTGGGTTGGACATTTGGGATGGTGGACTCCTTGTGGGCTGGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.56

Weight (kDa)

9.36

Isoelectric Point (pI)

20.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 134
AccII CGCG 1 cut(s) 157
AciI CCGC 4 cut(s) 95, 155, 157, 287
AclWI GGATC 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
AlwI GGATC 1 cut(s) 28
AoxI GGCC 2 cut(s) 275, 363
ApeKI GCWGC 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 212
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 2 cut(s) 68, 106
BbvI GCAGC 1 cut(s) 222
BccI CCATC 4 cut(s) 46, 215, 277, 400
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 172
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 4 cut(s) 95, 155, 211, 288
BlsI GCNGC 4 cut(s) 96, 156, 212, 289
Bme1390I CCNGG 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 363
BmrFI CCNGG 1 cut(s) 172
BpiI GAAGAC 2 cut(s) 68, 106
BpmI CTGGAG 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 155, 171
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 155, 171
BseGI GGATG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 222
BseYI CCCAGC 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 2 cut(s) 277, 365
BshVI ATCGAT 1 cut(s) 39
BsnI GGCC 2 cut(s) 277, 365
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 3 cut(s) 15, 20, 36
BspACI CCGC 4 cut(s) 95, 155, 157, 287
BspANI GGCC 2 cut(s) 277, 365
BspDI ATCGAT 1 cut(s) 39
BspFNI CGCG 1 cut(s) 157
BspPI GGATC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 155, 171
BssMI GATC 3 cut(s) 15, 20, 36
Bst2UI CCWGG 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 306, 314
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 411
BstFNI CGCG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 3 cut(s) 18, 23, 39
BstMBI GATC 3 cut(s) 15, 20, 36
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 135
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 222
BstV2I GAAGAC 2 cut(s) 68, 106
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 2 cut(s) 277, 365
BsuTUI ATCGAT 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 411
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 363
Cfr42I CCGCGG 1 cut(s) 158
ClaI ATCGAT 1 cut(s) 39
DdeI CTNAG 2 cut(s) 306, 314
DpnI GATC 3 cut(s) 17, 22, 38
DpnII GATC 3 cut(s) 15, 20, 36
Eco24I GRGCYC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 351
FaiI YATR 2 cut(s) 44, 354
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 4 cut(s) 95, 155, 211, 288
FokI GGATG 1 cut(s) 418
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 4 cut(s) 95, 155, 211, 288
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 268
GluI GCNGC 4 cut(s) 95, 155, 211, 288
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 277, 365
HhaI GCGC 1 cut(s) 269
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HinfI GANTC 2 cut(s) 111, 413
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 3 cut(s) 135, 303, 412
Hpy188I TCNGA 5 cut(s) 20, 25, 104, 256, 263
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 3 cut(s) 135, 303, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 2 cut(s) 306, 314
HspAI GCGC 1 cut(s) 267
KspI CCGCGG 1 cut(s) 158
Kzo9I GATC 3 cut(s) 15, 20, 36
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 1 cut(s) 222
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 3 cut(s) 88, 200, 376
MalI GATC 3 cut(s) 17, 22, 38
MboI GATC 3 cut(s) 15, 20, 36
MboII GAAGA 4 cut(s) 73, 106, 237, 307
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 351
MlyI GAGTC 2 cut(s) 120, 407
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 6 cut(s) 25, 62, 202, 257, 321, 363
MroXI GAANNNNTTC 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 157
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 3 cut(s) 15, 20, 36
NmuCI GTSAC 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 299
PkrI GCNGC 4 cut(s) 96, 156, 212, 289
PleI GAGTC 2 cut(s) 119, 407
PpsI GAGTC 2 cut(s) 119, 407
Psp6I CCWGG 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 1 cut(s) 170
PspPI GGNCC 1 cut(s) 363
PsuI RGATCY 1 cut(s) 20
SacII CCGCGG 1 cut(s) 158
SatI GCNGC 4 cut(s) 95, 155, 211, 288
Sau3AI GATC 3 cut(s) 15, 20, 36
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 2 cut(s) 120, 407
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 351
SetI ASST 4 cut(s) 173, 233, 320, 361
SfcI CTRYAG 1 cut(s) 135
Sfr303I CCGCGG 1 cut(s) 158
SgrBI CCGCGG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
SsiI CCGC 4 cut(s) 95, 155, 157, 287
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 170
TaqI TCGA 1 cut(s) 39
TauI GCSGC 3 cut(s) 97, 157, 290
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 1 cut(s) 54
XmiI GTMKAC 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.