Rmu_sc0013423.1_g000002
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013423.1
OG0000220
Physical Location & Seq
Reverse (-)
7863 .. 10043
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013423.1_g000002.1.cds

Sequence Viewer

Length: 663 bp
atgtttttcttcgactggttctacaacgtgcttgcttccctcggtctgtggcaggaggaggccaagatcttgttcctcgggctcgataatgccggcaagaccttgcttcacatgctcaaagatgcgcttcacaaactgctggagcttgaaactgatggggttttggataggttggatgatctgggtgatatgaaagctttggtctttcacatttctggagtcttggcaactcccgatagctctgatgatggtggagaggggggaagcggaacaggtggtggaggtgagatatatgaatatggacaatcttctgtggatggaggattccaatttacatgtgaaggtaattttgatcatgccacccaagatgaagaccacagagtgagaacagctggtcatagtgctcaagagaagacccgatatgggaggaggactagaggtgcaaccgatgatcaaagtaccccatctgatgtttcttcaattgccttaagtttttactctatcagtttaggcacagagcgcagtgggatctcaaatgaatctcatgaaggcaacaatcaatttggttatgatgcatatggatataatcaatatggagaagtatatgatcagtcatctagttgggttcatccttattatccctttataggtatttatatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

220

Amino Acids

24.27

Weight (kDa)

4.48

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 267
AclWI GGATC 1 cut(s) 536
AdeI CACNNNGTG 1 cut(s) 382
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 2 cut(s) 423, 647
AflII CTTAAG 1 cut(s) 487
AflIII ACRYGT 1 cut(s) 335
AgsI TTSAA 2 cut(s) 149, 480
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 4 cut(s) 145, 197, 240, 392
AluI AGCT 4 cut(s) 145, 197, 240, 392
Alw21I GWGCWC 1 cut(s) 406
AlwI GGATC 1 cut(s) 536
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 60
AspLEI GCGC 2 cut(s) 127, 522
AsuHPI GGTGA 2 cut(s) 197, 296
AvaI CYCGRG 1 cut(s) 77
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 378, 419
Bbv12I GWGCWC 1 cut(s) 406
BccI CCATC 4 cut(s) 149, 242, 311, 472
BclI TGATCA 3 cut(s) 352, 451, 607
BfaI CTAG 2 cut(s) 435, 618
BfrI CTTAAG 1 cut(s) 487
BglII AGATCT 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 77
BmsI GCATC 2 cut(s) 112, 562
BpiI GAAGAC 2 cut(s) 378, 419
BpmI CTGGAG 2 cut(s) 161, 237
BpuEI CTTGAG 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 40, 76
Bsc4I CCNNNNNNNGG 2 cut(s) 423, 647
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 40, 76
BseGI GGATG 3 cut(s) 181, 322, 628
BseLI CCNNNNNNNGG 2 cut(s) 423, 647
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 2 cut(s) 71, 442
BshFI GGCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 423, 647
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 84, 406
Bsp143I GATC 6 cut(s) 66, 178, 352, 451, 528, 607
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 62
BspHI TCATGA 1 cut(s) 544
BspPI GGATC 1 cut(s) 536
BspTI CTTAAG 1 cut(s) 487
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 40, 76
BssMI GATC 6 cut(s) 66, 178, 352, 451, 528, 607
BstAFI CTTAAG 1 cut(s) 487
BstC8I GCNNGC 2 cut(s) 33, 94
BstF5I GGATG 3 cut(s) 181, 322, 628
BstHHI GCGC 2 cut(s) 127, 522
BstKTI GATC 6 cut(s) 69, 181, 355, 454, 531, 610
BstMBI GATC 6 cut(s) 66, 178, 352, 451, 528, 607
BstMWI GCNNNNNNNGC 2 cut(s) 112, 519
BstNSI RCATGY 2 cut(s) 115, 339
BstV2I GAAGAC 2 cut(s) 378, 419
BstX2I RGATCY 2 cut(s) 66, 528
BstYI RGATCY 2 cut(s) 66, 528
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 3 cut(s) 181, 322, 628
BtsI GCAGTG 1 cut(s) 529
BtsIMutI CAGTG 1 cut(s) 529
Cac8I GCNNGC 2 cut(s) 33, 94
CciI TCATGA 1 cut(s) 544
CfoI GCGC 2 cut(s) 127, 522
Cfr10I RCCGGY 1 cut(s) 92
Csp6I GTAC 1 cut(s) 459
CviAII CATG 4 cut(s) 112, 336, 356, 545
CviJI RGCY 6 cut(s) 62, 82, 145, 197, 240, 392
CviKI_1 RGCY 6 cut(s) 62, 82, 145, 197, 240, 392
CviQI GTAC 1 cut(s) 459
DpnI GATC 6 cut(s) 68, 180, 354, 453, 530, 609
DpnII GATC 6 cut(s) 66, 178, 352, 451, 528, 607
DraIII CACNNNGTG 1 cut(s) 382
Eco24I GRGCYC 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 4 cut(s) 115, 339, 359, 548
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FatI CATG 4 cut(s) 111, 335, 355, 544
FauNDI CATATG 1 cut(s) 577
FbaI TGATCA 3 cut(s) 352, 451, 607
FokI GGATG 3 cut(s) 188, 329, 615
FriOI GRGCYC 1 cut(s) 84
FspBI CTAG 2 cut(s) 435, 618
GlaI GCGC 2 cut(s) 126, 521
GsuI CTGGAG 2 cut(s) 161, 237
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 93
HhaI GCGC 2 cut(s) 127, 522
Hin1II CATG 4 cut(s) 115, 339, 359, 548
Hin6I GCGC 2 cut(s) 125, 520
HinP1I GCGC 2 cut(s) 125, 520
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 3 cut(s) 219, 324, 539
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 197, 296
Hpy188I TCNGA 2 cut(s) 244, 469
Hpy188III TCNNGA 4 cut(s) 216, 233, 407, 545
HpyAV CCTTC 2 cut(s) 335, 542
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 443, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 519
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 4 cut(s) 115, 339, 359, 548
HspAI GCGC 2 cut(s) 125, 520
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Ksp22I TGATCA 3 cut(s) 352, 451, 607
Kzo9I GATC 6 cut(s) 66, 178, 352, 451, 528, 607
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 7 cut(s) 38, 106, 125, 167, 201, 258, 378
LweI GCATC 2 cut(s) 112, 562
MaeI CTAG 2 cut(s) 435, 618
MaeII ACGT 1 cut(s) 27
MalI GATC 6 cut(s) 68, 180, 354, 453, 530, 609
MboI GATC 6 cut(s) 66, 178, 352, 451, 528, 607
MboII GAAGA 4 cut(s) 300, 383, 424, 468
MfeI CAATTG 1 cut(s) 480
MflI RGATCY 2 cut(s) 66, 528
MhlI GDGCHC 2 cut(s) 84, 406
MluCI AATT 4 cut(s) 329, 346, 480, 560
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 153
Mph1103I ATGCAT 1 cut(s) 577
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 392
MspCI CTTAAG 1 cut(s) 487
MspI CCGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 480
MwoI GCNNNNNNNGC 2 cut(s) 112, 519
NaeI GCCGGC 1 cut(s) 94
NdeI CATATG 1 cut(s) 577
NdeII GATC 6 cut(s) 66, 178, 352, 451, 528, 607
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 4 cut(s) 115, 339, 359, 548
NsiI ATGCAT 1 cut(s) 577
NspI RCATGY 2 cut(s) 115, 339
PagI TCATGA 1 cut(s) 544
PciI ACATGT 1 cut(s) 335
PdiI GCCGGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 324, 539
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 1 cut(s) 335
PsuI RGATCY 2 cut(s) 66, 528
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
SaqAI TTAA 1 cut(s) 488
Sau3AI GATC 6 cut(s) 66, 178, 352, 451, 528, 607
SchI GAGTC 1 cut(s) 228
SduI GDGCHC 2 cut(s) 84, 406
SfaNI GCATC 2 cut(s) 112, 562
SmlI CTYRAG 2 cut(s) 405, 487
SmoI CTYRAG 2 cut(s) 405, 487
Sse9I AATT 4 cut(s) 329, 346, 480, 560
SsiI CCGC 1 cut(s) 267
SspMI CTAG 2 cut(s) 435, 618
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 12, 84
TaqII GACCGA 1 cut(s) 32
TasI AATT 4 cut(s) 329, 346, 480, 560
TfiI GAWTC 2 cut(s) 324, 539
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TscAI CASTG 1 cut(s) 529
TspDTI ATGAA 6 cut(s) 206, 309, 384, 552, 561, 617
TspRI CASTG 1 cut(s) 529
Vha464I CTTAAG 1 cut(s) 487
XceI RCATGY 2 cut(s) 115, 339
XspI CTAG 2 cut(s) 435, 618
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.