Rroxscaffold_5G00386210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000220
Physical Location & Seq
Reverse (-)
65164062 .. 65165245
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386210.1

Sequence Viewer

Length: 591 bp
ATGCTTCCGAGATTCCTTGACACCTCAATTCCTTGGTCCATAATATCAGAATGTTTTCAAGCTCTTTTCAAAATATTTCCTTTAACTAAGTATTCGAGAAGCAAACTTTTTGGTAGACGCTATCACTTTGATCGCAAATATCATACCTATGGTGGTAGTGGGCGTGATAACTCGTGTGACAATAATAGTTATGACGACATTAATCGTGAGGCGAATTATGGAAATGACAGCGGGAGTGGCAAATCATGGCACTACAACCAATATAGTAGTGATGATCATACTACTTATCCTGGTGCAAATCGTGAATACAATTCTAGAGCTAGAGATACACAAGGAAGACGCGATAGCCATTTGTCTCTAAATGAGTTTGAATCACTTTCTTCAAGTCTTGGCTCAATGGACATAGGAACTCAATATAGTGATAACCCTAACCCATTCCATTTTCATTATCCTCATCATGAAATGAGTTCTACCTCGAAAGTACTTACGGAATTGGATCAAGCTCACAAGGTGGAAGCACATATGGCCTTTTTGATCATTCTTCGTCCCAAATGCCGCATGCTTCATACAATGAAACACCATATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.85

Weight (kDa)

7.25

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 115
AccII CGCG 1 cut(s) 342
AciI CCGC 2 cut(s) 231, 556
AclWI GGATC 1 cut(s) 504
AdeI CACNNNGTG 1 cut(s) 511
AfaI GTAC 1 cut(s) 483
AgsI TTSAA 5 cut(s) 59, 70, 371, 384, 587
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 3 cut(s) 62, 320, 503
AluI AGCT 3 cut(s) 62, 320, 503
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 1 cut(s) 504
AoxI GGCC 1 cut(s) 525
AseI ATTAAT 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 36
AvaII GGWCC 1 cut(s) 36
BauI CACGAG 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 2 cut(s) 274, 534
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 2 cut(s) 315, 321
BisI GCNGC 1 cut(s) 556
BlsI GCNGC 1 cut(s) 557
BmcAI AGTACT 1 cut(s) 483
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 1 cut(s) 527
BslFI GGGAC 1 cut(s) 531
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 1 cut(s) 527
Bsp143I GATC 4 cut(s) 130, 274, 496, 534
BspACI CCGC 2 cut(s) 231, 556
BspANI GGCC 1 cut(s) 527
BspFNI CGCG 1 cut(s) 342
BspHI TCATGA 1 cut(s) 457
BspPI GGATC 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 4 cut(s) 130, 274, 496, 534
BssSI CACGAG 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 560
BstDEI CTNAG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 4 cut(s) 133, 277, 499, 537
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 4 cut(s) 130, 274, 496, 534
BstMWI GCNNNNNNNGC 2 cut(s) 237, 524
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 1 cut(s) 289
BstUI CGCG 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 527
Cac8I GCNNGC 1 cut(s) 560
CciI TCATGA 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 36
CseI GACGC 2 cut(s) 126, 348
Csp6I GTAC 1 cut(s) 482
CviAII CATG 3 cut(s) 246, 458, 559
CviJI RGCY 6 cut(s) 62, 320, 348, 393, 503, 527
CviKI_1 RGCY 6 cut(s) 62, 320, 348, 393, 503, 527
CviQI GTAC 1 cut(s) 482
DdeI CTNAG 1 cut(s) 87
DpnI GATC 4 cut(s) 132, 276, 498, 536
DpnII GATC 4 cut(s) 130, 274, 496, 534
DraIII CACNNNGTG 1 cut(s) 511
Eco130I CCWWGG 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 3 cut(s) 249, 461, 562
FaqI GGGAC 1 cut(s) 531
FatI CATG 3 cut(s) 245, 457, 558
FauI CCCGC 1 cut(s) 224
FauNDI CATATG 1 cut(s) 522
FbaI TGATCA 2 cut(s) 274, 534
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 556
Fsp4HI GCNGC 1 cut(s) 556
FspBI CTAG 2 cut(s) 315, 321
GluI GCNGC 1 cut(s) 556
HaeIII GGCC 1 cut(s) 527
HgaI GACGC 2 cut(s) 126, 348
Hin1II CATG 3 cut(s) 249, 461, 562
HinfI GANTC 2 cut(s) 12, 371
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 2 cut(s) 9, 49
Hpy188III TCNNGA 5 cut(s) 96, 206, 302, 315, 458
Hpy8I GTNNAC 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 524
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 3 cut(s) 249, 461, 562
Ksp22I TGATCA 2 cut(s) 274, 534
Kzo9I GATC 4 cut(s) 130, 274, 496, 534
LpnPI CCDG 2 cut(s) 276, 303
MaeI CTAG 2 cut(s) 315, 321
MaeIII GTNAC 1 cut(s) 176
MalI GATC 4 cut(s) 132, 276, 498, 536
MboI GATC 4 cut(s) 130, 274, 496, 534
MboII GAAGA 3 cut(s) 348, 372, 533
MluCI AATT 4 cut(s) 27, 214, 310, 491
MnlI CCTC 4 cut(s) 34, 202, 462, 484
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 2 cut(s) 83, 201
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 237, 524
NdeI CATATG 1 cut(s) 522
NdeII GATC 4 cut(s) 130, 274, 496, 534
NlaIII CATG 3 cut(s) 249, 461, 562
NmuCI GTSAC 1 cut(s) 176
NspI RCATGY 1 cut(s) 562
PaeI GCATGC 1 cut(s) 562
PagI TCATGA 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 12, 371
PkrI GCNGC 1 cut(s) 557
PshBI ATTAAT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 1 cut(s) 36
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 2 cut(s) 83, 201
SatI GCNGC 1 cut(s) 556
Sau3AI GATC 4 cut(s) 130, 274, 496, 534
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 483
ScrFI CCNGG 1 cut(s) 291
SetI ASST 7 cut(s) 26, 64, 149, 322, 476, 505, 513
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 147
SphI GCATGC 1 cut(s) 562
Sse9I AATT 4 cut(s) 27, 214, 310, 491
SsiI CCGC 2 cut(s) 231, 556
SspI AATATT 1 cut(s) 75
SspMI CTAG 2 cut(s) 315, 321
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 32
TaqI TCGA 2 cut(s) 95, 476
TasI AATT 4 cut(s) 27, 214, 310, 491
TatI WGTACW 1 cut(s) 481
TauI GCSGC 1 cut(s) 558
TfiI GAWTC 2 cut(s) 12, 371
Tru1I TTAA 2 cut(s) 83, 201
Tru9I TTAA 2 cut(s) 83, 201
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 4 cut(s) 434, 474, 554, 587
TspGWI ACGGA 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 36
VspI ATTAAT 1 cut(s) 201
XbaI TCTAGA 1 cut(s) 314
XceI RCATGY 1 cut(s) 562
XmiI GTMKAC 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 2 cut(s) 315, 321
ZrmI AGTACT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.