Rorug05G0329600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000220
Physical Location & Seq
Reverse (-)
39706213 .. 39708084
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0329600.1

Sequence Viewer

Length: 1485 bp
ATGGACACCCTTGTCAGATTGTTTTCACCGCCACCACCACTACCAACCAAGACCAGTCAACTCTTTCATGCATCCAGTCCTCCATTTTCTTTGCCAAAGCCCCATCACTCAAGAAAGAGATTTTCCAGAGTCCAAAGCAAGTATGGAAATTTTCTGGACTTGAAACCAGAGGCAAAACCTGAAGTGTTAGACTTTGATCTGCCCCGGTTGGACCCTTCTAGCCGGTTTCGGTCAGATGTGATCATCATCGGCACAGGCCCTGCTGGTCTTCGTCTTGCTGAGCAAGTGTCACAGTATGGCATCAAGGTATGTTGTGTTGATCCTTCACCTCTTTCTATGTGGCCAAATAACTATGGTGTTTGGGTTGATGAGTTTGAGAGCTTGGAGCTTGAAAGTTGCTTAGACAAAACATGGCCTATGGCTTGTGTTCATATTGATGATAGTAAGACCAAGTATTTGGACCGTCCTTATGGTCGAGTCAGTAGGAAGAAACTTAAGAATTTGTTGATGGAGAGGTGTCTCTCCAATGGAGTTAAATTTCACCAGGCAAAGGTTTGGAAAATTGAGCACAAGGAGTTTGAGTCTTTGATTTTGTGTGATGATGGGAATGAGTTGAAGGCAAGCTTAGTTGTTGATGCCAGTGGTTTTGCAAGCAATTTCGTAGAGTATAATAAGCCAAGGAACCATGGCTATCAGATTGCTCATGGAATTTTGGCTGAAGTGGAGGGTCACCCCTTCGACTTGGACAAGATGCTTCTTATGGATTGGAGGGATTCTCATCTTGGAAATGAACCTTACTTGCGTACTGGTAATTCTAGGATCCCCACTTTTCTGTATGCAATGCCATTTGATTCCAACTTAGTATTCTTGGAAGAGACTTCACTGGTTAGTAGGCCAGTTTTATCTTACATGGAGATTAAGAAAAGAATGGTGGCGAGGCTAAGGCATTTGGGCATTCGAGTGAAGAGGATATTGGAGGTTGAGAAGTGTTTGATTCCAATGGGAGGCCCTCTTCCTCGGATACCTCAAAGCGTTATGGCAATTGGCGGGACTTCTGGGATTGTCCATCCTTCAACTGGTTACATGGTGGCTCGGACAATGGCTCTAGCACCGATACTTGCTGAGGCCATTGCAGAGTGCCTTGGTTCGAGCCGAATGATCAGAGGGAAATCGCTTCATCAACGAGCGTGGAATGGTTTGTGGCCAATTGAGAGGAGATGTGTAAGGGAATATTACTCTTTCGGGATGGAGACTTTGTTGAAGCTTGATCTTAATGGGAGTAGAAGGTTTTTTGATGCTTTCTTTGACTTGGATCCTTATTACTGGCAAGGGTTTCTCTCTTCAAGGTTGTCTCTTAGAGAGCTTGCTTTGTTGAGTTTATCTCTGTTTGGCCATGCCTCATTTCCGTCTAGGTTCGATATTGTTTCAAAGTGTCCTGTGCCCTTGGTTAAAATGATTGGGAATCTAGCACTAGAAACCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

494

Amino Acids

56.14

Weight (kDa)

9.01

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lycopene_cycl PF05834 79 - 471 8.5e-147 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AciI CCGC 2 cut(s) 29, 1047
AclWI GGATC 5 cut(s) 314, 814, 827, 1307, 1320
AcoI YGGCCR 3 cut(s) 341, 1202, 1390
AcsI RAATTY 4 cut(s) 148, 499, 536, 708
AcuI CTGAAG 2 cut(s) 201, 738
AfaI GTAC 1 cut(s) 805
AfiI CCNNNNNNNGG 3 cut(s) 550, 1004, 1076
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 7 cut(s) 163, 392, 616, 1074, 1261, 1344, 1428
AjnI CCWGG 1 cut(s) 543
AjuI GAANNNNNNNTTGG 4 cut(s) 848, 880, 956, 988
AluBI AGCT 5 cut(s) 381, 388, 624, 1264, 1363
AluI AGCT 5 cut(s) 381, 388, 624, 1264, 1363
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 4 cut(s) 524, 869, 1244, 1356
AlwI GGATC 5 cut(s) 314, 814, 827, 1307, 1320
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 8 cut(s) 256, 341, 413, 893, 1006, 1125, 1202, 1390
ApoI RAATTY 4 cut(s) 148, 499, 536, 708
ArsI GACNNNNNNTTYG 2 cut(s) 439, 471
AspS9I GGNCC 4 cut(s) 211, 257, 460, 1007
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 4 cut(s) 18, 318, 533, 722
AvaII GGWCC 2 cut(s) 211, 460
BaeGI GKGCMC 1 cut(s) 1443
BalI TGGCCA 3 cut(s) 343, 1204, 1392
BamHI GGATCC 2 cut(s) 819, 1312
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 570
BbvCI CCTCAGC 1 cut(s) 1122
BccI CCATC 5 cut(s) 111, 502, 596, 1074, 1240
BciT130I CCWGG 1 cut(s) 545
BciVI GTATCC 1 cut(s) 1014
BclI TGATCA 2 cut(s) 240, 1158
BcnI CCSGG 1 cut(s) 205
BcoDI GTCTC 4 cut(s) 524, 869, 1244, 1356
BfaI CTAG 6 cut(s) 219, 816, 1106, 1410, 1466, 1472
BfrI CTTAAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 1014
BlpI GCTNAGC 1 cut(s) 279
Bme1390I CCNGG 2 cut(s) 205, 545
Bme18I GGWCC 2 cut(s) 211, 460
BmgT120I GGNCC 4 cut(s) 211, 257, 460, 1007
BmiI GGNNCC 4 cut(s) 213, 683, 821, 1314
BmrFI CCNGG 2 cut(s) 205, 545
BmsI GCATC 5 cut(s) 80, 309, 625, 741, 1285
BpiI GAAGAC 1 cut(s) 260
BplI GAGNNNNNCTC 4 cut(s) 760, 792, 1366, 1398
Bpu10I CCTNAGC 2 cut(s) 941, 1122
Bpu1102I GCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 205
BsaBI GATNNNNATC 2 cut(s) 245, 777
BsaJI CCNNGG 6 cut(s) 203, 677, 685, 1016, 1141, 1443
BsaXI ACNNNNNCTCC 4 cut(s) 566, 596, 1241, 1271
Bsc4I CCNNNNNNNGG 3 cut(s) 550, 1004, 1076
Bse118I RCCGGY 1 cut(s) 222
Bse1I ACTGG 8 cut(s) 54, 75, 639, 811, 888, 896, 1081, 1328
Bse3DI GCAATG 2 cut(s) 846, 1128
Bse8I GATNNNNATC 2 cut(s) 245, 777
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 6 cut(s) 203, 677, 685, 1016, 1141, 1443
BseGI GGATG 3 cut(s) 71, 1066, 1251
BseJI GATNNNNATC 2 cut(s) 245, 777
BseLI CCNNNNNNNGG 3 cut(s) 550, 1004, 1076
BseMI GCAATG 2 cut(s) 846, 1128
BseMII CTCAG 2 cut(s) 270, 1113
BseNI ACTGG 8 cut(s) 54, 75, 639, 811, 888, 896, 1081, 1328
BseRI GAGGAG 1 cut(s) 1228
BseSI GKGCMC 1 cut(s) 1443
BshFI GGCC 8 cut(s) 258, 343, 415, 895, 1008, 1127, 1204, 1392
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 2 cut(s) 205, 223
BslFI GGGAC 1 cut(s) 1063
BslI CCNNNNNNNGG 3 cut(s) 550, 1004, 1076
BsmAI GTCTC 4 cut(s) 524, 869, 1244, 1356
BsmFI GGGAC 1 cut(s) 1063
BsmI GAATGC 1 cut(s) 954
BsnI GGCC 8 cut(s) 258, 343, 415, 895, 1008, 1127, 1204, 1392
Bsp1286I GDGCHC 2 cut(s) 570, 1443
Bsp143I GATC 7 cut(s) 196, 240, 319, 819, 1158, 1267, 1312
Bsp1720I GCTNAGC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 685
BspACI CCGC 2 cut(s) 29, 1047
BspANI GGCC 8 cut(s) 258, 343, 415, 895, 1008, 1127, 1204, 1392
BspCNI CTCAG 2 cut(s) 271, 1114
BspLI GGNNCC 4 cut(s) 213, 683, 821, 1314
BspPI GGATC 5 cut(s) 314, 814, 827, 1307, 1320
BspTI CTTAAG 1 cut(s) 494
BsrDI GCAATG 2 cut(s) 846, 1128
BsrFI RCCGGY 1 cut(s) 222
BsrI ACTGG 8 cut(s) 54, 75, 639, 811, 888, 896, 1081, 1328
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 6 cut(s) 203, 677, 685, 1016, 1141, 1443
BssMI GATC 7 cut(s) 196, 240, 319, 819, 1158, 1267, 1312
BssT1I CCWWGG 4 cut(s) 677, 685, 1141, 1443
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 2 cut(s) 294, 464
Bst6I CTCTTC 4 cut(s) 867, 959, 1017, 1345
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 3 cut(s) 622, 652, 1365
BstDEI CTNAG 7 cut(s) 279, 400, 625, 859, 941, 1122, 1355
BstDSI CCRYGG 1 cut(s) 685
BstEII GGTNACC 1 cut(s) 728
BstF5I GGATG 3 cut(s) 71, 1066, 1251
BstKTI GATC 7 cut(s) 199, 243, 322, 822, 1161, 1270, 1315
BstMAI GTCTC 4 cut(s) 524, 869, 1244, 1356
BstMBI GATC 7 cut(s) 196, 240, 319, 819, 1158, 1267, 1312
BstNI CCWGG 1 cut(s) 545
BstPI GGTNACC 1 cut(s) 728
BstSCI CCNGG 2 cut(s) 203, 543
BstSLI GKGCMC 1 cut(s) 1443
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 819, 1312
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 2 cut(s) 819, 1312
BsuI GTATCC 1 cut(s) 1014
BsuRI GGCC 8 cut(s) 258, 343, 415, 895, 1008, 1127, 1204, 1392
BtgI CCRYGG 1 cut(s) 685
BtsCI GGATG 3 cut(s) 71, 1066, 1251
BtsIMutI CAGTG 2 cut(s) 646, 881
Cac8I GCNNGC 3 cut(s) 622, 652, 1365
CaiI CAGNNNCTG 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 222
Cfr13I GGNCC 4 cut(s) 211, 257, 460, 1007
Csp6I GTAC 1 cut(s) 804
CspCI CAANNNNNGTGG 2 cut(s) 1169, 1204
CviAII CATG 8 cut(s) 68, 411, 686, 704, 910, 1084, 1394, 1480
CviQI GTAC 1 cut(s) 804
DdeI CTNAG 7 cut(s) 279, 400, 625, 859, 941, 1122, 1355
DpnI GATC 7 cut(s) 198, 242, 321, 821, 1160, 1269, 1314
DpnII GATC 7 cut(s) 196, 240, 319, 819, 1158, 1267, 1312
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 3 cut(s) 341, 1202, 1390
Eam1104I CTCTTC 4 cut(s) 867, 959, 1017, 1345
EarI CTCTTC 4 cut(s) 867, 959, 1017, 1345
Eco130I CCWWGG 4 cut(s) 677, 685, 1141, 1443
Eco47I GGWCC 2 cut(s) 211, 460
Eco57I CTGAAG 2 cut(s) 201, 738
Eco91I GGTNACC 1 cut(s) 728
EcoO109I RGGNCCY 2 cut(s) 257, 1007
EcoO65I GGTNACC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 4 cut(s) 677, 685, 1141, 1443
EcoT22I ATGCAT 1 cut(s) 73
ErhI CCWWGG 4 cut(s) 677, 685, 1141, 1443
FaeI CATG 8 cut(s) 71, 414, 689, 707, 913, 1087, 1397, 1483
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FaqI GGGAC 1 cut(s) 1063
FatI CATG 8 cut(s) 67, 410, 685, 703, 909, 1083, 1393, 1479
FauI CCCGC 1 cut(s) 1040
FbaI TGATCA 2 cut(s) 240, 1158
FokI GGATG 3 cut(s) 58, 1053, 1258
FspBI CTAG 6 cut(s) 219, 816, 1106, 1410, 1466, 1472
HaeIII GGCC 8 cut(s) 258, 343, 415, 895, 1008, 1127, 1204, 1392
HapII CCGG 2 cut(s) 205, 223
Hin1II CATG 8 cut(s) 71, 414, 689, 707, 913, 1087, 1397, 1483
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HindIII AAGCTT 2 cut(s) 622, 1262
HinfI GANTC 7 cut(s) 129, 477, 581, 773, 851, 994, 1462
HpaII CCGG 2 cut(s) 205, 223
HphI GGTGA 4 cut(s) 18, 318, 533, 722
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 6 cut(s) 17, 235, 696, 1020, 1095, 1163
Hpy188III TCNNGA 4 cut(s) 111, 126, 155, 1243
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 6 cut(s) 225, 333, 610, 745, 1080, 1278
HpyCH4III ACNGT 2 cut(s) 294, 464
HpyCH4V TGCA 4 cut(s) 71, 650, 839, 1133
HpyF3I CTNAG 7 cut(s) 279, 400, 625, 859, 941, 1122, 1355
Hsp92II CATG 8 cut(s) 71, 414, 689, 707, 913, 1087, 1397, 1483
Ksp22I TGATCA 2 cut(s) 240, 1158
Kzo9I GATC 7 cut(s) 196, 240, 319, 819, 1158, 1267, 1312
LmnI GCTCC 1 cut(s) 385
LweI GCATC 5 cut(s) 80, 309, 625, 741, 1285
MaeI CTAG 6 cut(s) 219, 816, 1106, 1410, 1466, 1472
MaeIII GTNAC 3 cut(s) 288, 728, 1079
MalI GATC 7 cut(s) 198, 242, 321, 821, 1160, 1269, 1314
MboI GATC 7 cut(s) 196, 240, 319, 819, 1158, 1267, 1312
MboII GAAGA 6 cut(s) 260, 499, 884, 976, 1004, 1332
MfeI CAATTG 2 cut(s) 1041, 1206
MflI RGATCY 2 cut(s) 819, 1312
MhlI GDGCHC 2 cut(s) 570, 1443
MlsI TGGCCA 3 cut(s) 343, 1204, 1392
MluCI AATT 9 cut(s) 148, 499, 536, 561, 655, 708, 811, 1041, 1206
MluNI TGGCCA 3 cut(s) 343, 1204, 1392
MlyI GAGTC 3 cut(s) 138, 486, 590
MmeI TCCRAC 2 cut(s) 189, 879
Mox20I TGGCCA 3 cut(s) 343, 1204, 1392
Mph1103I ATGCAT 1 cut(s) 73
MscI TGGCCA 3 cut(s) 343, 1204, 1392
MseI TTAA 5 cut(s) 495, 534, 918, 1272, 1449
MslI CAYNNNNRTG 2 cut(s) 435, 959
Msp20I TGGCCA 3 cut(s) 343, 1204, 1392
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 2 cut(s) 205, 223
MspR9I CCNGG 2 cut(s) 205, 545
MunI CAATTG 2 cut(s) 1041, 1206
Mva1269I GAATGC 1 cut(s) 954
MvaI CCWGG 1 cut(s) 545
NciI CCSGG 1 cut(s) 205
NcoI CCATGG 1 cut(s) 685
NdeII GATC 7 cut(s) 196, 240, 319, 819, 1158, 1267, 1312
NlaIII CATG 8 cut(s) 71, 414, 689, 707, 913, 1087, 1397, 1483
NlaIV GGNNCC 4 cut(s) 213, 683, 821, 1314
NmuCI GTSAC 2 cut(s) 288, 728
NsiI ATGCAT 1 cut(s) 73
PctI GAATGC 1 cut(s) 954
PfeI GAWTC 4 cut(s) 773, 851, 994, 1462
PleI GAGTC 3 cut(s) 137, 485, 589
PpsI GAGTC 3 cut(s) 137, 485, 589
Psp6I CCWGG 1 cut(s) 543
PspEI GGTNACC 1 cut(s) 728
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 4 cut(s) 213, 683, 821, 1314
PspPI GGNCC 4 cut(s) 211, 257, 460, 1007
PstNI CAGNNNCTG 1 cut(s) 260
PsuI RGATCY 2 cut(s) 819, 1312
RsaI GTAC 1 cut(s) 805
RsaNI GTAC 1 cut(s) 804
RseI CAYNNNNRTG 2 cut(s) 435, 959
SaqAI TTAA 5 cut(s) 495, 534, 918, 1272, 1449
Sau3AI GATC 7 cut(s) 196, 240, 319, 819, 1158, 1267, 1312
Sau96I GGNCC 4 cut(s) 211, 257, 460, 1007
SchI GAGTC 3 cut(s) 138, 486, 590
ScrFI CCNGG 2 cut(s) 205, 545
SduI GDGCHC 2 cut(s) 570, 1443
SfaNI GCATC 5 cut(s) 80, 309, 625, 741, 1285
SinI GGWCC 2 cut(s) 211, 460
SmiMI CAYNNNNRTG 2 cut(s) 435, 959
SmlI CTYRAG 2 cut(s) 109, 494
SmoI CTYRAG 2 cut(s) 109, 494
Sse9I AATT 9 cut(s) 148, 499, 536, 561, 655, 708, 811, 1041, 1206
SsiI CCGC 2 cut(s) 29, 1047
SspI AATATT 1 cut(s) 1232
SspMI CTAG 6 cut(s) 219, 816, 1106, 1410, 1466, 1472
StyD4I CCNGG 2 cut(s) 203, 543
StyI CCWWGG 4 cut(s) 677, 685, 1141, 1443
TaaI ACNGT 2 cut(s) 294, 464
TaqI TCGA 5 cut(s) 475, 738, 958, 1148, 1416
TaqII GACCGA 1 cut(s) 219
TasI AATT 9 cut(s) 148, 499, 536, 561, 655, 708, 811, 1041, 1206
TfiI GAWTC 4 cut(s) 773, 851, 994, 1462
Tru1I TTAA 5 cut(s) 495, 534, 918, 1272, 1449
Tru9I TTAA 5 cut(s) 495, 534, 918, 1272, 1449
TscAI CASTG 2 cut(s) 646, 888
TseFI GTSAC 2 cut(s) 288, 728
Tsp45I GTSAC 2 cut(s) 288, 728
TspDTI ATGAA 4 cut(s) 56, 419, 804, 1166
TspGWI ACGGA 1 cut(s) 1395
TspRI CASTG 2 cut(s) 646, 888
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 2 cut(s) 211, 460
XapI RAATTY 4 cut(s) 148, 499, 536, 708
XcmI CCANNNNNNNNNTGG 2 cut(s) 140, 1073
XspI CTAG 6 cut(s) 219, 816, 1106, 1410, 1466, 1472
Zsp2I ATGCAT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.