FvH4_6g31371

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000220
Physical Location & Seq
Reverse (-)
24530103 .. 24531322
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31371.t1

Sequence Viewer

Length: 762 bp
ATGAAGAGTGGTAGAGTGACACGCCTTAAATACCACCTCAACGGCATGGATCCTGGAAACAATGTGCAACAGTGTGAGGCTGTTCCAATAGAAGTGAAGAATTTTATCGTATCCTTCTTGATGAAAGATAATAGTGACGATGAAGTGTACCTTGATGAGGACATGGGCCATGAGGAACTGAGAGCATATCAACAAGAAATTCGTGACTCTAAAGAAGCACAATGGAATAGAGAGCACCCCCACAAAGTTCCTAACCGAGATGGGTCTAGTAGCTGCACACACATGCGACGAGCAACAAGTAGCAGGGGAAGGAGTATTGCCCCTACACCTTATGAGATAAGAAACAAGTACTTGGATATGGAATTCAAAGACAGTTATGAATATGTTGACACACTCAAGGCAACACGGGAGACCTACGGATGGACGATCATGTGCGATGGATGGAAAGGGCAAACTAGATTGTCCAACATAAATTTCATGGTCTACTCCAAAAGTACCTCTGTTTTTCTCAAGTCTGTTGATTCTTCTGGTGAGAAGAAAGAGCATGAGTATACATACAAATTGTTGAAGGGAGTTATAAGAGAGGTTGGAGAGCGCAATGTGGTTCAAGTGGTGACTGACAATGCTACTAATTATGTTAAAGCTGGAGTTTTGCAAAGGAGAAATTATTCAGGCTACATCAACTCGATTCGCAACAAACTTCATTTTCTTAGAAAGCTTGATCAAGAAGAAGGCGGGATTCAAATAGTTATTTACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

254

Amino Acids

29.44

Weight (kDa)

8.76

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 108 - 223 1.8e-30 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
AccI GTMKAC 2 cut(s) 483, 551
AciI CCGC 1 cut(s) 735
AclWI GGATC 2 cut(s) 44, 57
AcsI RAATTY 4 cut(s) 100, 198, 362, 472
AfaI GTAC 3 cut(s) 149, 350, 496
AfiI CCNNNNNNNGG 2 cut(s) 157, 420
AgsI TTSAA 4 cut(s) 367, 568, 608, 743
AjnI CCWGG 1 cut(s) 52
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 3 cut(s) 273, 644, 718
AluI AGCT 3 cut(s) 273, 644, 718
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 2 cut(s) 44, 57
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 273
ApoI RAATTY 4 cut(s) 100, 198, 362, 472
Asp700I GAANNNNTTC 1 cut(s) 667
AspLEI GCGC 1 cut(s) 597
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 542, 625
BamHI GGATCC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 260
BccI CCATC 4 cut(s) 254, 414, 431, 435
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 54
BciVI GTATCC 1 cut(s) 121
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 2 cut(s) 267, 456
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
BmcAI AGTACT 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 380, 494
BsaI GGTCTC 1 cut(s) 404
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 420
Bse3DI GCAATG 1 cut(s) 604
BseBI CCWGG 1 cut(s) 54
BseGI GGATG 2 cut(s) 425, 446
BseLI CCNNNNNNNGG 2 cut(s) 157, 420
BseMI GCAATG 1 cut(s) 604
BseMII CTCAG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 259
BshFI GGCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 157, 420
BsmAI GTCTC 1 cut(s) 404
BsnI GGCC 1 cut(s) 168
Bso31I GGTCTC 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 3 cut(s) 49, 426, 721
BspACI CCGC 1 cut(s) 735
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 2 cut(s) 44, 57
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 604
BssMI GATC 3 cut(s) 49, 426, 721
BssNAI GTATAC 1 cut(s) 552
Bst1107I GTATAC 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 72, 374
BstDEI CTNAG 2 cut(s) 179, 710
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 425, 446
BstHHI GCGC 1 cut(s) 597
BstKTI GATC 3 cut(s) 52, 429, 724
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 3 cut(s) 49, 426, 721
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BstZ17I GTATAC 1 cut(s) 552
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 2 cut(s) 425, 446
BtsIMutI CAGTG 1 cut(s) 77
CfoI GCGC 1 cut(s) 597
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 3 cut(s) 148, 349, 495
CviAII CATG 7 cut(s) 46, 163, 170, 283, 430, 478, 545
CviJI RGCY 6 cut(s) 80, 168, 273, 644, 675, 718
CviKI_1 RGCY 6 cut(s) 80, 168, 273, 644, 675, 718
CviQI GTAC 3 cut(s) 148, 349, 495
DdeI CTNAG 2 cut(s) 179, 710
DpnI GATC 3 cut(s) 51, 428, 723
DpnII GATC 3 cut(s) 49, 426, 721
Eco31I GGTCTC 1 cut(s) 404
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 52
FaeI CATG 7 cut(s) 49, 166, 173, 286, 433, 481, 548
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 7 cut(s) 45, 162, 169, 282, 429, 477, 544
FauI CCCGC 1 cut(s) 728
FbaI TGATCA 1 cut(s) 721
FblI GTMKAC 2 cut(s) 483, 551
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 2 cut(s) 432, 453
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 2 cut(s) 267, 456
GlaI GCGC 1 cut(s) 596
GluI GCNGC 1 cut(s) 274
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 1 cut(s) 168
HhaI GCGC 1 cut(s) 597
Hin1II CATG 7 cut(s) 49, 166, 173, 286, 433, 481, 548
Hin6I GCGC 1 cut(s) 595
HinP1I GCGC 1 cut(s) 595
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 4 cut(s) 206, 521, 688, 739
HphI GGTGA 2 cut(s) 542, 625
Hpy166II GTNNAC 4 cut(s) 148, 388, 484, 552
Hpy188III TCNNGA 3 cut(s) 118, 203, 725
Hpy8I GTNNAC 4 cut(s) 148, 388, 484, 552
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 4 cut(s) 124, 303, 562, 725
HpyCH4III ACNGT 2 cut(s) 72, 374
HpyCH4V TGCA 3 cut(s) 67, 276, 655
HpyF3I CTNAG 2 cut(s) 179, 710
Hsp92II CATG 7 cut(s) 49, 166, 173, 286, 433, 481, 548
HspAI GCGC 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 3 cut(s) 49, 426, 721
LpnPI CCDG 6 cut(s) 39, 66, 289, 513, 630, 657
Lsp1109I GCAGC 1 cut(s) 260
MaeI CTAG 2 cut(s) 267, 456
MaeIII GTNAC 4 cut(s) 16, 134, 203, 613
MalI GATC 3 cut(s) 51, 428, 723
MboI GATC 3 cut(s) 49, 426, 721
MboII GAAGA 5 cut(s) 16, 109, 516, 547, 740
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 7 cut(s) 100, 198, 362, 472, 560, 631, 664
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 489, 568
MnlI CCTC 6 cut(s) 47, 70, 151, 166, 508, 577
MroXI GAANNNNTTC 1 cut(s) 667
MseI TTAA 2 cut(s) 27, 639
MslI CAYNNNNRTG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
NdeII GATC 3 cut(s) 49, 426, 721
NlaIII CATG 7 cut(s) 49, 166, 173, 286, 433, 481, 548
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 4 cut(s) 16, 134, 203, 613
NspI RCATGY 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 667
PfeI GAWTC 3 cut(s) 521, 688, 739
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PsiI TTATAA 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 3 cut(s) 149, 350, 496
RsaNI GTAC 3 cut(s) 148, 349, 495
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 2 cut(s) 27, 639
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 3 cut(s) 49, 426, 721
Sau96I GGNCC 1 cut(s) 166
ScaI AGTACT 1 cut(s) 350
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 1 cut(s) 237
SetI ASST 9 cut(s) 39, 153, 275, 331, 416, 500, 588, 646, 720
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 395, 509
SmoI CTYRAG 2 cut(s) 395, 509
Sse9I AATT 7 cut(s) 100, 198, 362, 472, 560, 631, 664
SsiI CCGC 1 cut(s) 735
SspMI CTAG 2 cut(s) 267, 456
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 2 cut(s) 72, 374
TaqI TCGA 1 cut(s) 686
TasI AATT 7 cut(s) 100, 198, 362, 472, 560, 631, 664
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 3 cut(s) 521, 688, 739
Tru1I TTAA 2 cut(s) 27, 639
Tru9I TTAA 2 cut(s) 27, 639
TscAI CASTG 1 cut(s) 77
TseFI GTSAC 4 cut(s) 16, 134, 203, 613
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 4 cut(s) 16, 134, 203, 613
TspDTI ATGAA 6 cut(s) 17, 137, 156, 393, 466, 692
TspGWI ACGGA 1 cut(s) 432
TspRI CASTG 1 cut(s) 77
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 4 cut(s) 100, 198, 362, 472
XceI RCATGY 1 cut(s) 286
XmiI GTMKAC 2 cut(s) 483, 551
XmnI GAANNNNTTC 1 cut(s) 667
XspI CTAG 2 cut(s) 267, 456
ZrmI AGTACT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.