Rmu_sc0000414.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000414.1
OG0000220
Physical Location & Seq
Reverse (-)
9852 .. 11064
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000414.1_g000004.1.cds

Sequence Viewer

Length: 327 bp
atgccggccggaactgatcctttgagaagccaccgccacccatcaccgcttcagcgggcgtccgtggccttccaccatcagagcacagtagagaaggccctgccttgggtcgatcttggaaagcaaacccaagaggtgatagcatggataaaggtaaaagattctattaagcaagaaaaggcagctgttcaagatgatattagagaggaactccgcaatgattatcttggcaatcaaataagtctgtacaatgaagatgacgacaatgatgatgatgatgatgatggatttcagtatccaccagacatgcaccctgcagaacgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

108

Amino Acids

12.41

Weight (kDa)

4.63

Isoelectric Point (pI)

56.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 34, 47, 55, 214
AclWI GGATC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 105, 106
AgsI TTSAA 1 cut(s) 191
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw21I GWGCWC 1 cut(s) 86
AlwI GGATC 1 cut(s) 11
AoxI GGCC 3 cut(s) 6, 66, 96
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 36, 148
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 194
BccI CCATC 3 cut(s) 49, 84, 278
BciVI GTATCC 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 315
BfuI GTATCC 1 cut(s) 306
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 195, 227
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 63, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 106
Bse118I RCCGGY 1 cut(s) 4
Bse3DI GCAATG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 63, 104
BseLI CCNNNNNNNGG 2 cut(s) 105, 106
BseMI GCAATG 1 cut(s) 223
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 194
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 8, 68, 98
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 2 cut(s) 5, 9
BslI CCNNNNNNNGG 2 cut(s) 105, 106
BsnI GGCC 3 cut(s) 8, 68, 98
Bsp1286I GDGCHC 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 2 cut(s) 16, 112
BspACI CCGC 4 cut(s) 34, 47, 55, 214
BspANI GGCC 3 cut(s) 8, 68, 98
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 4
BsrGI TGTACA 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 63, 104
BssMI GATC 2 cut(s) 16, 112
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 6, 57
BstDSI CCRYGG 1 cut(s) 63
BstKTI GATC 2 cut(s) 19, 115
BstMBI GATC 2 cut(s) 16, 112
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 194
BstZI CGGCCG 1 cut(s) 6
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 3 cut(s) 8, 68, 98
BtgI CCRYGG 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 6, 57
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 97
CseI GACGC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 144, 307
CviJI RGCY 5 cut(s) 8, 30, 68, 98, 185
CviKI_1 RGCY 5 cut(s) 8, 30, 68, 98, 185
CviQI GTAC 1 cut(s) 247
DpnI GATC 2 cut(s) 18, 114
DpnII GATC 2 cut(s) 16, 112
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 104
Eco52I CGGCCG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 2 cut(s) 147, 310
FaiI YATR 2 cut(s) 145, 308
FatI CATG 2 cut(s) 143, 306
FauI CCCGC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 3 cut(s) 8, 68, 98
HapII CCGG 2 cut(s) 5, 9
HgaI GACGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 2 cut(s) 147, 310
HinfI GANTC 1 cut(s) 161
HpaII CCGG 2 cut(s) 5, 9
HphI GGTGA 2 cut(s) 36, 148
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 79, 88
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 310, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 2 cut(s) 147, 310
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 16, 112
LpnPI CCDG 4 cut(s) 18, 22, 113, 315
Lsp1109I GCAGC 1 cut(s) 194
MalI GATC 2 cut(s) 18, 114
MboI GATC 2 cut(s) 16, 112
MboII GAAGA 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 86
MnlI CCTC 2 cut(s) 127, 199
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 1 cut(s) 168
MspA1I CMGCKG 2 cut(s) 55, 185
MspI CCGG 2 cut(s) 5, 9
MwoI GCNNNNNNNGC 1 cut(s) 65
NaeI GCCGGC 1 cut(s) 6
NdeII GATC 2 cut(s) 16, 112
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 147, 310
NspI RCATGY 1 cut(s) 310
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 97
PstI CTGCAG 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 2 cut(s) 16, 112
Sau96I GGNCC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 86
SetI ASST 3 cut(s) 138, 156, 187
SfcI CTRYAG 1 cut(s) 315
SsiI CCGC 4 cut(s) 34, 47, 55, 214
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 111
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 267
TspGWI ACGGA 1 cut(s) 52
XceI RCATGY 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.