RLG00000035412

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000220
Physical Location & Seq
Forward (+)
66609265 .. 66609897
633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035412

Sequence Viewer

Length: 522 bp
ATGTCCCTAACTCTTTCTCTCTCTCGGGAGGACTACTGTCAGTTTCTCTCCTCGGCTAGCGGCGGCGACAAAACTTCTCGCCGGATTTTTTCTTTTTCATATTGTAGCAGCGATAAAACTACTCGTCTGTCTCTCTCTTTGGGTGAAGGAGGCGTTTCTGAGGATGTTGGTGGGGATGGGGTTCTGGTTGATCGGATTTGGCTTGGAGGAGCTCCAATTGACAGTGATGGTGGATCAGCTCTTGATCCGACGATCAGTGTCTGGGAAGGCTATGGTAGAGATCGGGGAGTAGACGTGGCTGATGGTGCTGCTAAGTGGGAAGAAACTGGGATGGTGGAGCCATCCTATCCTGGCTGGGAGATCCAGGCGCTCTGGGTCCCGAATACTGATAGAGTGGTTTGTGTGGTTGTCGGCAATGATCTCTTCTCCAGAGGCCAGATGATGGATTTGGAAGACGACAAACATAGAGGCTGGTCTTGGTGGGTGGCTTGGGCCTACAACTGGGCTTGTTTCTTAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.96

Weight (kDa)

4.34

Isoelectric Point (pI)

28.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 442
AccI GTMKAC 1 cut(s) 291
AciI CCGC 2 cut(s) 60, 63
AclWI GGATC 3 cut(s) 239, 241, 355
AfiI CCNNNNNNNGG 2 cut(s) 442, 501
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 2 cut(s) 349, 363
AluBI AGCT 2 cut(s) 212, 239
AluI AGCT 2 cut(s) 212, 239
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 3 cut(s) 239, 241, 355
AlwNI CAGNNNCTG 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 2 cut(s) 433, 492
ApeKI GCWGC 2 cut(s) 108, 308
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 2 cut(s) 376, 492
AsuHPI GGTGA 1 cut(s) 155
AsuNHI GCTAGC 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 24
AvaII GGWCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 120, 295
BccI CCATC 6 cut(s) 170, 221, 296, 325, 349, 436
BciT130I CCWGG 2 cut(s) 351, 365
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 371
BisI GCNGC 4 cut(s) 61, 64, 109, 309
BlsI GCNGC 4 cut(s) 62, 65, 110, 310
Bme1390I CCNGG 2 cut(s) 351, 365
Bme18I GGWCC 1 cut(s) 376
BmeT110I CYCGRG 1 cut(s) 24
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 376, 492
BmiI GGNNCC 3 cut(s) 339, 377, 378
BmrFI CCNGG 2 cut(s) 351, 365
BmrI ACTGGG 2 cut(s) 336, 511
BmtI GCTAGC 1 cut(s) 60
BmuI ACTGGG 2 cut(s) 336, 511
BoxI GACNNNNGTC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 459
BpmI CTGGAG 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 501
Bse1I ACTGG 2 cut(s) 331, 506
Bse3DI GCAATG 1 cut(s) 421
BseBI CCWGG 2 cut(s) 351, 365
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 4 cut(s) 169, 181, 336, 341
BseLI CCNNNNNNNGG 2 cut(s) 442, 501
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 331, 506
BseRI GAGGAG 2 cut(s) 40, 222
BseXI GCAGC 2 cut(s) 120, 295
BseYI CCCAGC 1 cut(s) 354
BshFI GGCC 2 cut(s) 435, 494
BsiHKAI GWGCWC 1 cut(s) 214
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 82
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 442, 501
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 2 cut(s) 435, 494
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 7 cut(s) 190, 233, 244, 252, 280, 360, 418
BspACI CCGC 2 cut(s) 60, 63
BspANI GGCC 2 cut(s) 435, 494
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 3 cut(s) 339, 377, 378
BspOI GCTAGC 1 cut(s) 60
BspPI GGATC 3 cut(s) 239, 241, 355
BsrDI GCAATG 1 cut(s) 421
BsrI ACTGG 2 cut(s) 331, 506
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 7 cut(s) 190, 233, 244, 252, 280, 360, 418
Bst2UI CCWGG 2 cut(s) 351, 365
Bst4CI ACNGT 2 cut(s) 38, 224
Bst6I CTCTTC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 3 cut(s) 159, 312, 514
BstF5I GGATG 4 cut(s) 169, 181, 336, 341
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 7 cut(s) 193, 236, 247, 255, 283, 363, 421
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 7 cut(s) 190, 233, 244, 252, 280, 360, 418
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 2 cut(s) 351, 365
BstPAI GACNNNNGTC 1 cut(s) 36
BstSCI CCNGG 2 cut(s) 349, 363
BstV1I GCAGC 2 cut(s) 120, 295
BstV2I GAAGAC 1 cut(s) 459
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 2 cut(s) 435, 494
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 4 cut(s) 169, 181, 336, 341
BtsIMutI CAGTG 2 cut(s) 229, 262
Cac8I GCNNGC 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 261
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 376, 492
DdeI CTNAG 3 cut(s) 159, 312, 514
DpnI GATC 7 cut(s) 192, 235, 246, 254, 282, 362, 420
DpnII GATC 7 cut(s) 190, 233, 244, 252, 280, 360, 418
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Ecl136II GAGCTC 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 2 cut(s) 349, 363
EcoT38I GRGCYC 1 cut(s) 214
FaiI YATR 3 cut(s) 100, 273, 465
FaqI GGGAC 1 cut(s) 362
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 4 cut(s) 61, 64, 109, 309
FokI GGATG 4 cut(s) 176, 188, 328, 343
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 4 cut(s) 61, 64, 109, 309
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 369
GluI GCNGC 4 cut(s) 61, 64, 109, 309
GsaI CCCAGC 1 cut(s) 358
GsuI CTGGAG 1 cut(s) 412
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 2 cut(s) 435, 494
HapII CCGG 1 cut(s) 82
HhaI GCGC 1 cut(s) 370
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HpaII CCGG 1 cut(s) 82
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 3 cut(s) 160, 195, 249
Hpy188III TCNNGA 4 cut(s) 26, 242, 379, 429
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 140, 260
HpyCH4III ACNGT 2 cut(s) 38, 224
HpyCH4IV ACGT 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 3 cut(s) 159, 312, 514
HpySE526I ACGT 1 cut(s) 294
HspAI GCGC 1 cut(s) 368
KflI GGGWCCC 1 cut(s) 376
Kzo9I GATC 7 cut(s) 190, 233, 244, 252, 280, 360, 418
LmnI GCTCC 3 cut(s) 209, 217, 337
Lsp1109I GCAGC 2 cut(s) 120, 295
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 294
MalI GATC 7 cut(s) 192, 235, 246, 254, 282, 362, 420
MboI GATC 7 cut(s) 190, 233, 244, 252, 280, 360, 418
MboII GAAGA 3 cut(s) 332, 415, 464
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 7 cut(s) 22, 61, 143, 154, 200, 425, 461
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 2 cut(s) 351, 365
MunI CAATTG 1 cut(s) 216
MvaI CCWGG 2 cut(s) 351, 365
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 7 cut(s) 190, 233, 244, 252, 280, 360, 418
NheI GCTAGC 1 cut(s) 56
NlaIV GGNNCC 3 cut(s) 339, 377, 378
NmeAIII GCCGAG 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 442
PkrI GCNGC 4 cut(s) 62, 65, 110, 310
PpuMI RGGWCCY 1 cut(s) 376
PshAI GACNNNNGTC 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 2 cut(s) 349, 363
PspFI CCCAGC 1 cut(s) 354
PspGI CCWGG 2 cut(s) 349, 363
PspN4I GGNNCC 3 cut(s) 339, 377, 378
PspPI GGNCC 2 cut(s) 376, 492
PspPPI RGGWCCY 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 261
PsuI RGATCY 1 cut(s) 360
SacI GAGCTC 1 cut(s) 214
SatI GCNGC 4 cut(s) 61, 64, 109, 309
Sau3AI GATC 7 cut(s) 190, 233, 244, 252, 280, 360, 418
Sau96I GGNCC 2 cut(s) 376, 492
ScrFI CCNGG 2 cut(s) 351, 365
SduI GDGCHC 1 cut(s) 214
SetI ASST 3 cut(s) 214, 241, 297
SinI GGWCC 1 cut(s) 376
Sse9I AATT 1 cut(s) 216
SsiI CCGC 2 cut(s) 60, 63
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 1 cut(s) 214
StyD4I CCNGG 2 cut(s) 349, 363
TaaI ACNGT 2 cut(s) 38, 224
TaiI ACGT 1 cut(s) 297
TasI AATT 1 cut(s) 216
TauI GCSGC 2 cut(s) 63, 66
TscAI CASTG 2 cut(s) 229, 262
TseI GCWGC 2 cut(s) 108, 308
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 2 cut(s) 229, 262
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 376
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.