Rmu_sc0000239.1_g000042

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000239.1
OG0000220
Physical Location & Seq
Forward (+)
280282 .. 281028
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000239.1_g000042.1.cds

Sequence Viewer

Length: 747 bp
atgcatgttgcaagcgagccgtttgataatggcattgatccacttcatgattggattatgcctgcacacctcgatgatgaagctggaagacctcttccacaagttgtagaaactgcaactaatgctggaatcaacgtagagagggtcttatctgaagaagttgttaaaaacccagaagagaattcagatagtgatgatgcgtggggtggtacagcaactccagatagttctgatgatggtggggaggggggaagtggaacatgtggtggaggggaaagatatgaatatggacaatcttctgtggatggaggattccaatttacctgtgaaggtaattttgatcatgccacccaagatgaagaccacggagtgagaacagatggtcatggttctcaagagaagacccgatttgggaggaggactagaggtgcaactgatgatcaaagtcccccatctgatgtttcttcaattgccttaagttttgaccctatcagtttaggcacagagcgcagtgggatctcaaatgaatctcacgaaggcaacgatcaatttggttatgatgcttatgaatataatcaatatggagaagtatatgatcagtcatctagttgggttcatccttattataccattataggggaaacagtcggcagctctaaagagatctataactatcatgttcatcactacaattcgcactatatgggtcatatgttttggtctgattattgcatattcgtagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

248

Amino Acids

27.31

Weight (kDa)

4.33

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 741
AclWI GGATC 2 cut(s) 32, 524
AcsI RAATTY 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 174
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 411, 636
AflII CTTAAG 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 1 cut(s) 468
AluBI AGCT 2 cut(s) 83, 654
AluI AGCT 2 cut(s) 83, 654
AlwI GGATC 2 cut(s) 32, 524
ApeKI GCWGC 1 cut(s) 651
ApoI RAATTY 1 cut(s) 181
AspLEI GCGC 1 cut(s) 510
BbsI GAAGAC 3 cut(s) 94, 366, 407
BbvI GCAGC 1 cut(s) 663
BccI CCATC 4 cut(s) 230, 299, 374, 460
BceAI ACGGC 1 cut(s) 4
BclI TGATCA 3 cut(s) 340, 439, 595
BfaI CTAG 3 cut(s) 423, 606, 745
BfrI CTTAAG 1 cut(s) 475
BglII AGATCT 1 cut(s) 663
BisI GCNGC 1 cut(s) 652
BlsI GCNGC 1 cut(s) 653
BmsI GCATC 2 cut(s) 187, 550
BpiI GAAGAC 3 cut(s) 94, 366, 407
BpmI CTGGAG 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 636
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 2 cut(s) 310, 616
BseLI CCNNNNNNNGG 2 cut(s) 411, 636
BseRI GAGGAG 1 cut(s) 430
BseXI GCAGC 1 cut(s) 663
BsgI GTGCAG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 2 cut(s) 411, 636
BsmFI GGGAC 1 cut(s) 432
Bsp143I GATC 7 cut(s) 37, 340, 439, 516, 544, 595, 663
BspHI TCATGA 1 cut(s) 46
BspPI GGATC 2 cut(s) 32, 524
BspTI CTTAAG 1 cut(s) 475
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 7 cut(s) 37, 340, 439, 516, 544, 595, 663
Bst4CI ACNGT 1 cut(s) 646
Bst6I CTCTTC 2 cut(s) 99, 171
BstAFI CTTAAG 1 cut(s) 475
BstAPI GCANNNNNTGC 1 cut(s) 122
BstC8I GCNNGC 3 cut(s) 13, 17, 63
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 2 cut(s) 310, 616
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 7 cut(s) 40, 343, 442, 519, 547, 598, 666
BstMBI GATC 7 cut(s) 37, 340, 439, 516, 544, 595, 663
BstMWI GCNNNNNNNGC 2 cut(s) 122, 507
BstNSI RCATGY 2 cut(s) 8, 264
BstV1I GCAGC 1 cut(s) 663
BstV2I GAAGAC 3 cut(s) 94, 366, 407
BstX2I RGATCY 2 cut(s) 516, 663
BstYI RGATCY 2 cut(s) 516, 663
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 2 cut(s) 310, 616
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 3 cut(s) 13, 17, 63
CciI TCATGA 1 cut(s) 46
CfoI GCGC 1 cut(s) 510
Csp6I GTAC 1 cut(s) 210
CviAII CATG 6 cut(s) 5, 47, 261, 344, 386, 677
CviJI RGCY 3 cut(s) 19, 83, 654
CviKI_1 RGCY 3 cut(s) 19, 83, 654
CviQI GTAC 1 cut(s) 210
DpnI GATC 7 cut(s) 39, 342, 441, 518, 546, 597, 665
DpnII GATC 7 cut(s) 37, 340, 439, 516, 544, 595, 663
DraIII CACNNNGTG 1 cut(s) 370
Eam1104I CTCTTC 2 cut(s) 99, 171
EarI CTCTTC 2 cut(s) 99, 171
Eco57I CTGAAG 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 181
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 6 cut(s) 8, 50, 264, 347, 389, 680
FaqI GGGAC 1 cut(s) 432
FatI CATG 6 cut(s) 4, 46, 260, 343, 385, 676
FauNDI CATATG 1 cut(s) 711
FbaI TGATCA 3 cut(s) 340, 439, 595
FblI GTMKAC 1 cut(s) 741
Fnu4HI GCNGC 1 cut(s) 652
FokI GGATG 2 cut(s) 317, 603
Fsp4HI GCNGC 1 cut(s) 652
FspBI CTAG 3 cut(s) 423, 606, 745
GlaI GCGC 1 cut(s) 509
GluI GCNGC 1 cut(s) 652
GsuI CTGGAG 1 cut(s) 204
HhaI GCGC 1 cut(s) 510
Hin1II CATG 6 cut(s) 8, 50, 264, 347, 389, 680
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HinfI GANTC 3 cut(s) 129, 312, 527
Hpy166II GTNNAC 1 cut(s) 742
Hpy188I TCNGA 5 cut(s) 154, 187, 232, 457, 724
Hpy188III TCNNGA 4 cut(s) 47, 221, 395, 533
Hpy8I GTNNAC 1 cut(s) 742
HpyAV CCTTC 2 cut(s) 323, 530
HpyCH4III ACNGT 1 cut(s) 646
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 4, 11, 65, 116, 431, 732
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 507
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 6 cut(s) 8, 50, 264, 347, 389, 680
HspAI GCGC 1 cut(s) 508
Ksp22I TGATCA 3 cut(s) 340, 439, 595
Kzo9I GATC 7 cut(s) 37, 340, 439, 516, 544, 595, 663
LpnPI CCDG 6 cut(s) 69, 75, 111, 186, 234, 337
Lsp1109I GCAGC 1 cut(s) 663
LweI GCATC 2 cut(s) 187, 550
MaeI CTAG 3 cut(s) 423, 606, 745
MaeII ACGT 1 cut(s) 135
MalI GATC 7 cut(s) 39, 342, 441, 518, 546, 597, 665
MboI GATC 7 cut(s) 37, 340, 439, 516, 544, 595, 663
MboII GAAGA 8 cut(s) 86, 99, 167, 188, 288, 371, 412, 456
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 2 cut(s) 516, 663
MluCI AATT 6 cut(s) 181, 317, 334, 468, 548, 691
MnlI CCTC 9 cut(s) 80, 102, 135, 238, 263, 302, 408, 411, 419
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 165, 476
MslI CAYNNNNRTG 1 cut(s) 72
MspCI CTTAAG 1 cut(s) 475
MunI CAATTG 1 cut(s) 468
MwoI GCNNNNNNNGC 2 cut(s) 122, 507
NdeI CATATG 1 cut(s) 711
NdeII GATC 7 cut(s) 37, 340, 439, 516, 544, 595, 663
NlaIII CATG 6 cut(s) 8, 50, 264, 347, 389, 680
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 264
PagI TCATGA 1 cut(s) 46
PciI ACATGT 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 540
PfeI GAWTC 3 cut(s) 129, 312, 527
PkrI GCNGC 1 cut(s) 653
PscI ACATGT 1 cut(s) 260
PsuI RGATCY 2 cut(s) 516, 663
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 2 cut(s) 165, 476
SatI GCNGC 1 cut(s) 652
Sau3AI GATC 7 cut(s) 37, 340, 439, 516, 544, 595, 663
SetI ASST 8 cut(s) 72, 85, 94, 138, 326, 334, 430, 656
SfaNI GCATC 2 cut(s) 187, 550
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 393, 475
SmoI CTYRAG 2 cut(s) 393, 475
Sse9I AATT 6 cut(s) 181, 317, 334, 468, 548, 691
SspMI CTAG 3 cut(s) 423, 606, 745
TaaI ACNGT 1 cut(s) 646
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 72
TasI AATT 6 cut(s) 181, 317, 334, 468, 548, 691
TfiI GAWTC 3 cut(s) 129, 312, 527
Tru1I TTAA 2 cut(s) 165, 476
Tru9I TTAA 2 cut(s) 165, 476
TscAI CASTG 1 cut(s) 517
TseI GCWGC 1 cut(s) 651
TspDTI ATGAA 8 cut(s) 35, 93, 297, 372, 540, 582, 605, 671
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 1 cut(s) 517
Vha464I CTTAAG 1 cut(s) 475
XapI RAATTY 1 cut(s) 181
XceI RCATGY 2 cut(s) 8, 264
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 741
XspI CTAG 3 cut(s) 423, 606, 745
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.