Rmu_sc0011620.1_g000005

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011620.1
OG0000220
Physical Location & Seq
Reverse (-)
27937 .. 28596
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011620.1_g000005.1.cds

Sequence Viewer

Length: 660 bp
atgggaaagcttttatactgctactacaacatgaagttgcggctgcgagataaacaggcaaagaataacgtggtcaatgaaaacaactatataaatctacttcatgttgcaagcaagccacttgataatggcattgatccacttcatgattggattatgcctgcacacctcgatgatgaagctagaagacctgcaactaatgctggaatcaatgtagagagagtcttatctgaagaagttgttaaaaaccaagaagataattcagatagtgatgatgcatggggtgttacagcaactccagatagttctaatgatggtggagagggtggaagcagaacaggtggtggaggtgaaagatatgaatatggacaatcttctgtggatggaggattaaaccaatttacctgtgaaggtaattttgaacataccacccaagatgaagaccacagagtgagaacagctagtcatgatgctcaagagaagatccgatatgggaggaggactagaggtgcaacggatgatcaaagtaccccatctgatgtttcttcaattgccgtaagttttgactctatcagtttaggcacagagcgcagtggaatctcaaatgaatctcatgaaggcaacaatcaatttggttatgatggttacggatataattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

219

Amino Acids

24.14

Weight (kDa)

4.72

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 199
AciI CCGC 1 cut(s) 40
AclWI GGATC 2 cut(s) 131, 478
AcuI CTGAAG 1 cut(s) 252
AdeI CACNNNGTG 1 cut(s) 451
AfaI GTAC 1 cut(s) 529
AgsI TTSAA 2 cut(s) 422, 549
AluBI AGCT 3 cut(s) 10, 182, 461
AluI AGCT 3 cut(s) 10, 182, 461
AlwI GGATC 2 cut(s) 131, 478
ApeKI GCWGC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 591
AsuHPI GGTGA 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 193, 447
BbvI GCAGC 1 cut(s) 30
BccI CCATC 4 cut(s) 308, 377, 541, 635
BceAI ACGGC 1 cut(s) 539
BclI TGATCA 1 cut(s) 520
BfaI CTAG 3 cut(s) 183, 462, 504
BfuAI ACCTGC 1 cut(s) 199
BisI GCNGC 2 cut(s) 41, 44
BlsI GCNGC 2 cut(s) 42, 45
BmsI GCATC 2 cut(s) 265, 460
BpiI GAAGAC 2 cut(s) 193, 447
BpmI CTGGAG 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
BseGI GGATG 2 cut(s) 388, 523
BseRI GAGGAG 1 cut(s) 511
BseXI GCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 147
Bsp143I GATC 3 cut(s) 136, 483, 520
BspACI CCGC 1 cut(s) 40
BspHI TCATGA 3 cut(s) 145, 466, 613
BspMI ACCTGC 1 cut(s) 199
BspPI GGATC 2 cut(s) 131, 478
BssMI GATC 3 cut(s) 136, 483, 520
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 3 cut(s) 112, 116, 162
BstF5I GGATG 2 cut(s) 388, 523
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 3 cut(s) 139, 486, 523
BstMBI GATC 3 cut(s) 136, 483, 520
BstMWI GCNNNNNNNGC 2 cut(s) 200, 588
BstV1I GCAGC 1 cut(s) 30
BstV2I GAAGAC 2 cut(s) 193, 447
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BtsCI GGATG 2 cut(s) 388, 523
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 1 cut(s) 598
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 3 cut(s) 112, 116, 162
CciI TCATGA 3 cut(s) 145, 466, 613
CfoI GCGC 1 cut(s) 591
Csp6I GTAC 1 cut(s) 528
CviAII CATG 6 cut(s) 31, 104, 146, 279, 467, 614
CviJI RGCY 5 cut(s) 10, 43, 118, 182, 461
CviKI_1 RGCY 5 cut(s) 10, 43, 118, 182, 461
CviQI GTAC 1 cut(s) 528
DpnI GATC 3 cut(s) 138, 485, 522
DpnII GATC 3 cut(s) 136, 483, 520
DraIII CACNNNGTG 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 280
FaeI CATG 6 cut(s) 34, 107, 149, 282, 470, 617
FatI CATG 6 cut(s) 30, 103, 145, 278, 466, 613
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 2 cut(s) 41, 44
FokI GGATG 2 cut(s) 395, 530
Fsp4HI GCNGC 2 cut(s) 41, 44
FspBI CTAG 3 cut(s) 183, 462, 504
GlaI GCGC 1 cut(s) 590
GluI GCNGC 2 cut(s) 41, 44
GsuI CTGGAG 1 cut(s) 282
HhaI GCGC 1 cut(s) 591
Hin1II CATG 6 cut(s) 34, 107, 149, 282, 470, 617
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 5 cut(s) 207, 222, 566, 597, 608
HphI GGTGA 1 cut(s) 362
Hpy188I TCNGA 4 cut(s) 232, 265, 488, 538
Hpy188III TCNNGA 5 cut(s) 146, 299, 467, 476, 614
HpyAV CCTTC 2 cut(s) 404, 611
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 5 cut(s) 110, 164, 194, 278, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 588
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 6 cut(s) 34, 107, 149, 282, 470, 617
HspAI GCGC 1 cut(s) 589
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 3 cut(s) 136, 483, 520
LpnPI CCDG 7 cut(s) 41, 174, 189, 204, 312, 324, 418
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 2 cut(s) 265, 460
MaeI CTAG 3 cut(s) 183, 462, 504
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 286, 644
MalI GATC 3 cut(s) 138, 485, 522
MboI GATC 3 cut(s) 136, 483, 520
MboII GAAGA 7 cut(s) 198, 245, 266, 366, 452, 493, 537
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 1 cut(s) 483
MluCI AATT 6 cut(s) 259, 398, 415, 549, 629, 655
MlyI GAGTC 2 cut(s) 231, 560
MnlI CCTC 7 cut(s) 179, 316, 341, 380, 489, 492, 500
Mph1103I ATGCAT 1 cut(s) 280
MseI TTAA 3 cut(s) 243, 392, 658
MslI CAYNNNNRTG 1 cut(s) 171
MunI CAATTG 1 cut(s) 549
MwoI GCNNNNNNNGC 2 cut(s) 200, 588
NdeII GATC 3 cut(s) 136, 483, 520
NlaIII CATG 6 cut(s) 34, 107, 149, 282, 470, 617
NsiI ATGCAT 1 cut(s) 280
PagI TCATGA 3 cut(s) 145, 466, 613
PfeI GAWTC 3 cut(s) 207, 597, 608
PkrI GCNGC 2 cut(s) 42, 45
PleI GAGTC 2 cut(s) 230, 560
PpsI GAGTC 2 cut(s) 230, 560
PsuI RGATCY 1 cut(s) 483
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 3 cut(s) 243, 392, 658
SatI GCNGC 2 cut(s) 41, 44
Sau3AI GATC 3 cut(s) 136, 483, 520
SchI GAGTC 2 cut(s) 231, 560
SfaNI GCATC 2 cut(s) 265, 460
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
Sse9I AATT 6 cut(s) 259, 398, 415, 549, 629, 655
SsiI CCGC 1 cut(s) 40
SspMI CTAG 3 cut(s) 183, 462, 504
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 171
TasI AATT 6 cut(s) 259, 398, 415, 549, 629, 655
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 3 cut(s) 207, 597, 608
Tru1I TTAA 3 cut(s) 243, 392, 658
Tru9I TTAA 3 cut(s) 243, 392, 658
TscAI CASTG 1 cut(s) 598
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 9 cut(s) 47, 92, 93, 134, 192, 375, 453, 621, 630
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 147
XspI CTAG 3 cut(s) 183, 462, 504
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.