Rmu_sc0001940.1_g000018

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001940.1
OG0000220
Physical Location & Seq
Reverse (-)
56543 .. 59141
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001940.1_g000018.1.cds

Sequence Viewer

Length: 660 bp
atgaagatcttcgtgaagactctcaaggggactcacttcgaagtcgaagtcaagcctcaggactcggttgctgatgtgaagaagtcgatagaaacttctcaaggttcggatgtatatcctgctacacaacagatgctaatccatcaaggaaaagtacttaaggatgggacgacattggaagaaaacaaagttgtggaaaatagctttgttgtgataatgttgacgaaggtatttttcttttccattcgttttgaaggtaattttgatcatgccactcaagatgaagaccacggagtgagaacagctggtcatggtgctgaagagaagacccgatatgggagaaggactagaggtgcaactgatgatcaaagtaccccatctgatgtttcttcaattgccttaagttttgactctatcagtttaggcacagagcgcagtgggatctcaaatgaatctcatgaaggcaacaatcaatttggttatgatgcttatggatataatcaatatggagaagtatatgatcaatcatctagttgggttcatctttattatcctcttataggggaaacagtcggcagctctaaagaggctctaaagagatctataactatcagttcatcactacaattcgcactatatgggtcatatgtcttggtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 ko04141 map03420 map04141
Pfam Domains
Protein Families
UBA XPC-binding ubiquitin

Protein Analysis

219

Amino Acids

24.32

Weight (kDa)

5.36

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 339
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 2 cut(s) 156, 373
AfiI CCNNNNNNNGG 2 cut(s) 336, 560
AflII CTTAAG 2 cut(s) 158, 400
AgsI TTSAA 2 cut(s) 254, 393
AluBI AGCT 3 cut(s) 204, 305, 579
AluI AGCT 3 cut(s) 204, 305, 579
AlwI GGATC 1 cut(s) 449
ApeKI GCWGC 1 cut(s) 576
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 435
AsuII TTCGAA 1 cut(s) 39
AxyI CCTNAGG 1 cut(s) 57
BbsI GAAGAC 3 cut(s) 23, 291, 332
BbvI GCAGC 1 cut(s) 588
BccI CCATC 3 cut(s) 150, 158, 385
BclI TGATCA 3 cut(s) 265, 364, 520
BfaI CTAG 2 cut(s) 348, 531
BfrI CTTAAG 2 cut(s) 158, 400
BglII AGATCT 2 cut(s) 6, 599
BisI GCNGC 1 cut(s) 577
BlsI GCNGC 1 cut(s) 578
BmcAI AGTACT 1 cut(s) 156
BmsI GCATC 2 cut(s) 123, 475
BpiI GAAGAC 3 cut(s) 23, 291, 332
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 3 cut(s) 8, 84, 261
BsaBI GATNNNNATC 2 cut(s) 114, 137
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 560
Bse21I CCTNAGG 1 cut(s) 57
Bse8I GATNNNNATC 2 cut(s) 114, 137
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 115, 169
BseJI GATNNNNATC 2 cut(s) 114, 137
BseLI CCNNNNNNNGG 2 cut(s) 336, 560
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 588
BslFI GGGAC 2 cut(s) 43, 181
BslI CCNNNNNNNGG 2 cut(s) 336, 560
BsmFI GGGAC 2 cut(s) 43, 181
Bsp119I TTCGAA 1 cut(s) 39
Bsp143I GATC 6 cut(s) 6, 265, 364, 441, 520, 599
BspCNI CTCAG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 457
BspPI GGATC 1 cut(s) 449
BspT104I TTCGAA 1 cut(s) 39
BspTI CTTAAG 2 cut(s) 158, 400
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 6 cut(s) 6, 265, 364, 441, 520, 599
Bst4CI ACNGT 1 cut(s) 571
Bst6I CTCTTC 1 cut(s) 315
BstAFI CTTAAG 2 cut(s) 158, 400
BstBI TTCGAA 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 289
BstENI CCTNNNNNAGG 1 cut(s) 558
BstF5I GGATG 2 cut(s) 115, 169
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 6 cut(s) 9, 268, 367, 444, 523, 602
BstMBI GATC 6 cut(s) 6, 265, 364, 441, 520, 599
BstMWI GCNNNNNNNGC 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 588
BstV2I GAAGAC 3 cut(s) 23, 291, 332
BstX2I RGATCY 3 cut(s) 6, 441, 599
BstYI RGATCY 3 cut(s) 6, 441, 599
Bsu36I CCTNAGG 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 115, 169
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 1 cut(s) 442
CciI TCATGA 1 cut(s) 457
CfoI GCGC 1 cut(s) 435
Csp6I GTAC 2 cut(s) 155, 372
CviAII CATG 3 cut(s) 269, 311, 458
CviJI RGCY 5 cut(s) 55, 204, 305, 579, 590
CviKI_1 RGCY 5 cut(s) 55, 204, 305, 579, 590
CviQI GTAC 2 cut(s) 155, 372
DdeI CTNAG 1 cut(s) 57
DpnI GATC 6 cut(s) 8, 267, 366, 443, 522, 601
DpnII GATC 6 cut(s) 6, 265, 364, 441, 520, 599
DraIII CACNNNGTG 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 339
Eco81I CCTNAGG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 558
FaeI CATG 3 cut(s) 272, 314, 461
FaqI GGGAC 2 cut(s) 43, 181
FatI CATG 3 cut(s) 268, 310, 457
FauNDI CATATG 1 cut(s) 646
FbaI TGATCA 3 cut(s) 265, 364, 520
Fnu4HI GCNGC 1 cut(s) 577
FokI GGATG 2 cut(s) 122, 176
Fsp4HI GCNGC 1 cut(s) 577
FspBI CTAG 2 cut(s) 348, 531
GlaI GCGC 1 cut(s) 434
GluI GCNGC 1 cut(s) 577
HhaI GCGC 1 cut(s) 435
Hin1II CATG 3 cut(s) 272, 314, 461
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 5 cut(s) 19, 31, 62, 410, 452
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 3 cut(s) 109, 382, 659
Hpy188III TCNNGA 4 cut(s) 13, 59, 278, 458
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 4 cut(s) 220, 248, 336, 455
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 432
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 3 cut(s) 272, 314, 461
HspAI GCGC 1 cut(s) 433
Ksp22I TGATCA 3 cut(s) 265, 364, 520
Kzo9I GATC 6 cut(s) 6, 265, 364, 441, 520, 599
LpnPI CCDG 3 cut(s) 44, 132, 291
Lsp1109I GCAGC 1 cut(s) 588
LweI GCATC 2 cut(s) 123, 475
MaeI CTAG 2 cut(s) 348, 531
MalI GATC 6 cut(s) 8, 267, 366, 443, 522, 601
MboI GATC 6 cut(s) 6, 265, 364, 441, 520, 599
MboII GAAGA 8 cut(s) 16, 28, 91, 191, 296, 332, 337, 381
MfeI CAATTG 1 cut(s) 393
MflI RGATCY 3 cut(s) 6, 441, 599
MluCI AATT 4 cut(s) 259, 393, 473, 626
MlyI GAGTC 4 cut(s) 13, 25, 56, 404
MnlI CCTC 4 cut(s) 66, 344, 564, 580
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 159, 401
MspA1I CMGCKG 1 cut(s) 305
MspCI CTTAAG 2 cut(s) 158, 400
MunI CAATTG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 432
NdeI CATATG 1 cut(s) 646
NdeII GATC 6 cut(s) 6, 265, 364, 441, 520, 599
NlaIII CATG 3 cut(s) 272, 314, 461
NspV TTCGAA 1 cut(s) 39
PagI TCATGA 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 1 cut(s) 578
PleI GAGTC 4 cut(s) 13, 25, 56, 404
PpsI GAGTC 4 cut(s) 13, 25, 56, 404
PsuI RGATCY 3 cut(s) 6, 441, 599
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 2 cut(s) 156, 373
RsaNI GTAC 2 cut(s) 155, 372
SaqAI TTAA 2 cut(s) 159, 401
SatI GCNGC 1 cut(s) 577
Sau3AI GATC 6 cut(s) 6, 265, 364, 441, 520, 599
ScaI AGTACT 1 cut(s) 156
SchI GAGTC 4 cut(s) 13, 25, 56, 404
SetI ASST 7 cut(s) 106, 206, 231, 259, 307, 355, 581
SfaNI GCATC 2 cut(s) 123, 475
SfuI TTCGAA 1 cut(s) 39
SmlI CTYRAG 5 cut(s) 23, 99, 158, 276, 400
SmoI CTYRAG 5 cut(s) 23, 99, 158, 276, 400
Sse9I AATT 4 cut(s) 259, 393, 473, 626
SspMI CTAG 2 cut(s) 348, 531
TaaI ACNGT 1 cut(s) 571
TaqI TCGA 3 cut(s) 39, 45, 86
TasI AATT 4 cut(s) 259, 393, 473, 626
TatI WGTACW 1 cut(s) 154
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 2 cut(s) 159, 401
Tru9I TTAA 2 cut(s) 159, 401
TscAI CASTG 1 cut(s) 442
TseI GCWGC 1 cut(s) 576
TspDTI ATGAA 6 cut(s) 17, 297, 465, 474, 530, 606
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 442
Vha464I CTTAAG 2 cut(s) 158, 400
XagI CCTNNNNNAGG 1 cut(s) 558
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 348, 531
ZrmI AGTACT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.