Rmu_sc0014544.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014544.1
OG0000220
Physical Location & Seq
Forward (+)
1 .. 2326
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014544.1_g000001.1.cds

Sequence Viewer

Length: 788 bp
gcaaagaggagttgcgctgttactatgcccatggagaagaagatgaaaaatttactagacgatggtattcactgattgaaaagccagggccacccaatctccccgacattattgacagatcaaaaagagttgtcgtccactacctgtatgacgagacctatatacctaagcgtcagaaaggaagcaagaataggtccgaagtggttcctgaactggataaggatctcaaggtcaagcgctctaggacatctgagagttgttctacagagattgtggaactaactgaagatgcagaagaactccatgagttggtggaaagtcaagaagcaacagacatggaggagctcaagggggttgcgagggcacctgccagtccctcagtggctctgccacagcaaccaatcccatcggttgatcaggaatctttacaagcttccgaagacactggagtaactttacccggaactttaccctgtcttcttcagcaaattaatgaacctgagcaaggtgaactgttggatgactgggatccctgcgttatgtctttgcaaacagatttagagggatatggaggcggtgagggcggttgggcatatggaggcggtaggggcggttggggatatggaggcggtaggggcggtggggtatatgaaggcgaagaagcatgtcgaggaaaaaatgtggaatgtggttccgggccgtacaacgggcttttctatgttgcagccttaaaggaattgggttgcgttggaaaccaaaagggagatgtgtgggccatcccagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.6

Weight (kDa)

4.58

Isoelectric Point (pI)

65.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 363
AccB7I CCANNNNNTGG 1 cut(s) 309
AciI CCGC 6 cut(s) 575, 584, 602, 611, 629, 638
AclWI GGATC 3 cut(s) 230, 523, 536
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 2 cut(s) 305, 466
AfaI GTAC 1 cut(s) 703
AfeI AGCGCT 1 cut(s) 238
AfiI CCNNNNNNNGG 3 cut(s) 309, 505, 706
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 3 cut(s) 345, 433, 784
AluI AGCT 3 cut(s) 345, 433, 784
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 3 cut(s) 230, 523, 536
Aor51HI AGCGCT 1 cut(s) 238
AoxI GGCC 3 cut(s) 88, 697, 773
ApeKI GCWGC 1 cut(s) 724
ApoI RAATTY 1 cut(s) 49
AseI ATTAAT 1 cut(s) 491
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 17, 239
AspS9I GGNCC 4 cut(s) 88, 194, 697, 773
AsuC2I CCSGG 2 cut(s) 461, 696
AsuHPI GGTGA 2 cut(s) 520, 589
AvaII GGWCC 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 366
BamHI GGATCC 1 cut(s) 528
BanI GGYRCC 1 cut(s) 363
BanII GRGCYC 1 cut(s) 347
BbsI GAAGAC 2 cut(s) 446, 469
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 736
BccI CCATC 3 cut(s) 56, 414, 784
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 1 cut(s) 86
BclI TGATCA 1 cut(s) 414
BcnI CCSGG 2 cut(s) 461, 696
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 2 cut(s) 56, 242
BfmI CTRYAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 375
BisI GCNGC 1 cut(s) 725
BlsI GCNGC 1 cut(s) 726
Bme1390I CCNGG 3 cut(s) 86, 461, 696
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 4 cut(s) 88, 194, 697, 773
BmiI GGNNCC 4 cut(s) 206, 365, 530, 693
BmrFI CCNGG 3 cut(s) 86, 461, 696
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 534
BpiI GAAGAC 2 cut(s) 446, 469
BpmI CTGGAG 1 cut(s) 467
Bpu10I CCTNAGC 2 cut(s) 167, 500
BpuEI CTTGAG 2 cut(s) 211, 331
BpuMI CCSGG 2 cut(s) 461, 696
BsaBI GATNNNNATC 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 30, 85
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 3 cut(s) 309, 505, 706
Bse1I ACTGG 4 cut(s) 218, 371, 450, 529
Bse8I GATNNNNATC 1 cut(s) 221
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 30, 85
BseGI GGATG 2 cut(s) 525, 776
BseJI GATNNNNATC 1 cut(s) 221
BseLI CCNNNNNNNGG 3 cut(s) 309, 505, 706
BseMII CTCAG 3 cut(s) 242, 392, 491
BseNI ACTGG 4 cut(s) 218, 371, 450, 529
BseRI GAGGAG 2 cut(s) 22, 355
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 1 cut(s) 736
BseYI CCCAGC 1 cut(s) 780
BshFI GGCC 3 cut(s) 90, 699, 775
BshNI GGYRCC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 347
BsiSI CCGG 2 cut(s) 461, 695
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 3 cut(s) 309, 505, 706
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 3 cut(s) 90, 699, 775
Bso31I GGTCTC 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 347, 366
Bsp143I GATC 4 cut(s) 118, 222, 414, 528
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 6 cut(s) 575, 584, 602, 611, 629, 638
BspANI GGCC 3 cut(s) 90, 699, 775
BspCNI CTCAG 3 cut(s) 243, 391, 492
BspLI GGNNCC 4 cut(s) 206, 365, 530, 693
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 3 cut(s) 230, 523, 536
BspT107I GGYRCC 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 148
BsrI ACTGG 4 cut(s) 218, 371, 450, 529
BssECI CCNNGG 2 cut(s) 30, 85
BssMI GATC 4 cut(s) 118, 222, 414, 528
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 515
BstDEI CTNAG 4 cut(s) 167, 251, 378, 500
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 503
BstF5I GGATG 2 cut(s) 525, 776
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 2 cut(s) 17, 239
BstKTI GATC 4 cut(s) 121, 225, 417, 531
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 4 cut(s) 118, 222, 414, 528
BstMWI GCNNNNNNNGC 4 cut(s) 581, 608, 635, 781
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 3 cut(s) 84, 459, 694
BstSFI CTRYAG 1 cut(s) 263
BstSLI GKGCMC 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 736
BstV2I GAAGAC 2 cut(s) 446, 469
BstX2I RGATCY 2 cut(s) 222, 528
BstYI RGATCY 2 cut(s) 222, 528
BsuRI GGCC 3 cut(s) 90, 699, 775
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 525, 776
BtsIMutI CAGTG 3 cut(s) 70, 386, 443
BveI ACCTGC 1 cut(s) 375
CfoI GCGC 2 cut(s) 17, 239
Cfr13I GGNCC 4 cut(s) 88, 194, 697, 773
CseI GACGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 702
CviAII CATG 4 cut(s) 31, 304, 336, 665
CviQI GTAC 1 cut(s) 702
DdeI CTNAG 4 cut(s) 167, 251, 378, 500
DpnI GATC 4 cut(s) 120, 224, 416, 530
DpnII GATC 4 cut(s) 118, 222, 414, 528
Ecl136II GAGCTC 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 194
Eco47III AGCGCT 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 345
Eco57I CTGAAG 2 cut(s) 305, 466
EcoICRI GAGCTC 1 cut(s) 345
EcoNI CCTNNNNNAGG 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 34, 307, 339, 668
FaqI GGGAC 1 cut(s) 359
FatI CATG 4 cut(s) 30, 303, 335, 664
FauNDI CATATG 1 cut(s) 594
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 1 cut(s) 725
FokI GGATG 2 cut(s) 532, 763
FriOI GRGCYC 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 725
FspBI CTAG 2 cut(s) 56, 242
GlaI GCGC 2 cut(s) 16, 238
GluI GCNGC 1 cut(s) 725
GsaI CCCAGC 1 cut(s) 784
GsuI CTGGAG 1 cut(s) 467
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 3 cut(s) 90, 699, 775
HapII CCGG 2 cut(s) 461, 695
HgaI GACGC 1 cut(s) 160
HhaI GCGC 2 cut(s) 17, 239
Hin1II CATG 4 cut(s) 34, 307, 339, 668
Hin6I GCGC 2 cut(s) 15, 237
HinP1I GCGC 2 cut(s) 15, 237
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 1 cut(s) 421
HpaII CCGG 2 cut(s) 461, 695
HphI GGTGA 2 cut(s) 520, 589
Hpy166II GTNNAC 2 cut(s) 138, 511
Hpy188I TCNGA 4 cut(s) 176, 198, 252, 438
Hpy188III TCNNGA 3 cut(s) 208, 322, 418
Hpy8I GTNNAC 2 cut(s) 138, 511
HpyAV CCTTC 1 cut(s) 646
HpyCH4III ACNGT 1 cut(s) 515
HpyCH4V TGCA 3 cut(s) 292, 549, 724
HpyF10VI GCNNNNNNNGC 4 cut(s) 581, 608, 635, 781
HpyF3I CTNAG 4 cut(s) 167, 251, 378, 500
Hsp92II CATG 4 cut(s) 34, 307, 339, 668
HspAI GCGC 2 cut(s) 15, 237
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 4 cut(s) 118, 222, 414, 528
LmnI GCTCC 1 cut(s) 342
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 1 cut(s) 279
MaeI CTAG 2 cut(s) 56, 242
MaeIII GTNAC 2 cut(s) 19, 450
MalI GATC 4 cut(s) 120, 224, 416, 530
MboI GATC 4 cut(s) 118, 222, 414, 528
MboII GAAGA 8 cut(s) 49, 52, 298, 307, 451, 469, 472, 670
MflI RGATCY 2 cut(s) 222, 528
MhlI GDGCHC 2 cut(s) 347, 366
MluCI AATT 3 cut(s) 49, 488, 736
MmeI TCCRAC 2 cut(s) 497, 729
MnlI CCTC 9 cut(s) 333, 353, 387, 555, 565, 573, 592, 619, 664
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 2 cut(s) 491, 730
MspI CCGG 2 cut(s) 461, 695
MspR9I CCNGG 3 cut(s) 86, 461, 696
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 4 cut(s) 581, 608, 635, 781
NciI CCSGG 2 cut(s) 461, 696
NcoI CCATGG 1 cut(s) 30
NdeI CATATG 1 cut(s) 594
NdeII GATC 4 cut(s) 118, 222, 414, 528
NlaIII CATG 4 cut(s) 34, 307, 339, 668
NlaIV GGNNCC 4 cut(s) 206, 365, 530, 693
NspI RCATGY 1 cut(s) 668
PaqCI CACCTGC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 421
PflMI CCANNNNNTGG 1 cut(s) 309
PkrI GCNGC 1 cut(s) 726
PshBI ATTAAT 1 cut(s) 491
Psp124BI GAGCTC 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 780
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 4 cut(s) 206, 365, 530, 693
PspPI GGNCC 4 cut(s) 88, 194, 697, 773
PsuI RGATCY 2 cut(s) 222, 528
RsaI GTAC 1 cut(s) 703
RsaNI GTAC 1 cut(s) 702
SacI GAGCTC 1 cut(s) 347
SaqAI TTAA 2 cut(s) 491, 730
SatI GCNGC 1 cut(s) 725
Sau3AI GATC 4 cut(s) 118, 222, 414, 528
Sau96I GGNCC 4 cut(s) 88, 194, 697, 773
ScrFI CCNGG 3 cut(s) 86, 461, 696
SduI GDGCHC 2 cut(s) 347, 366
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 263
SinI GGWCC 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 226, 346
SmoI CTYRAG 2 cut(s) 226, 346
Sse9I AATT 3 cut(s) 49, 488, 736
SsiI CCGC 6 cut(s) 575, 584, 602, 611, 629, 638
SspMI CTAG 2 cut(s) 56, 242
SstI GAGCTC 1 cut(s) 347
StyD4I CCNGG 3 cut(s) 84, 459, 694
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 515
TaqI TCGA 1 cut(s) 669
TasI AATT 3 cut(s) 49, 488, 736
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 2 cut(s) 491, 730
Tru9I TTAA 2 cut(s) 491, 730
TscAI CASTG 3 cut(s) 77, 386, 450
TseI GCWGC 1 cut(s) 724
TspDTI ATGAA 3 cut(s) 59, 509, 665
TspRI CASTG 3 cut(s) 77, 386, 450
Van91I CCANNNNNTGG 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 194
VspI ATTAAT 1 cut(s) 491
XagI CCTNNNNNAGG 1 cut(s) 503
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 378
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 2 cut(s) 56, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.