RLG00000024093

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000220
Physical Location & Seq
Reverse (-)
31684535 .. 31685058
524 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024093

Sequence Viewer

Length: 441 bp
ATGAAGATTAGAGGACAAGAGTTTGTGGCGGTGACGCCGCCGGTTCGAGTGCGAATCTTCTTGCATTTTTCGTCGTCCATAGGCAAGAACTTCAAGGTCATCGTTGTTGGCAAGCCTCTTTGGTTGTCGACGATAAAGATTGGGAGGTTGGGTCTGCTTGCATCAACAGCGAAGCTGCTGTCTATAAGACCGGTTTCACCGTGGCTTTTCTTTAAAGGCTGGCCTATTACGATGGAGTGTAAGATGGTCACTAGGCCTCTAGGGTTTGCTCTTGTGGCTCTTGGGGGTTCTGGGCTCTGTGGAGCTTGGGCCTTGAGGGTTGTTACTGCTTCCCTCAGTTGGACTTTTGGGATGGTGGACTCCTTGTGGACTGGGTATTGGGCAGCTTGGATCTTTGCTGGAACAAAGTTGATTGAGGCCTCTTACTTTCGGCGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.26

Weight (kDa)

11.05

Isoelectric Point (pI)

24.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 128
AciI CCGC 3 cut(s) 29, 38, 433
AclWI GGATC 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 339
AgeI ACCGGT 1 cut(s) 190
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 3 cut(s) 175, 305, 386
AluI AGCT 3 cut(s) 175, 305, 386
AlwI GGATC 1 cut(s) 398
AoxI GGCC 4 cut(s) 221, 254, 309, 417
ApeKI GCWGC 2 cut(s) 175, 383
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AsiGI ACCGGT 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 309
AsuHPI GGTGA 2 cut(s) 43, 189
BanII GRGCYC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 162, 395
BccI CCATC 3 cut(s) 226, 238, 346
BfaI CTAG 2 cut(s) 252, 260
BisI GCNGC 3 cut(s) 38, 176, 384
BlsI GCNGC 3 cut(s) 39, 177, 385
BmgT120I GGNCC 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 334
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse118I RCCGGY 2 cut(s) 40, 190
Bse1I ACTGG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 376
BseXI GCAGC 2 cut(s) 162, 395
BshFI GGCC 4 cut(s) 223, 256, 311, 419
BshTI ACCGGT 1 cut(s) 190
BsiSI CCGG 2 cut(s) 41, 191
BslI CCNNNNNNNGG 1 cut(s) 339
BsnI GGCC 4 cut(s) 223, 256, 311, 419
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 1 cut(s) 390
BspACI CCGC 3 cut(s) 29, 38, 433
BspANI GGCC 4 cut(s) 223, 256, 311, 419
BspCNI CTCAG 1 cut(s) 348
BspPI GGATC 1 cut(s) 398
BsrFI RCCGGY 2 cut(s) 40, 190
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 2 cut(s) 40, 190
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 390
BssNI GRCGYC 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 3 cut(s) 113, 159, 221
BstDEI CTNAG 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 1 cut(s) 393
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 2 cut(s) 167, 275
BstV1I GCAGC 2 cut(s) 162, 395
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BsuRI GGCC 4 cut(s) 223, 256, 311, 419
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 113, 159, 221
Cfr10I RCCGGY 2 cut(s) 40, 190
Cfr13I GGNCC 1 cut(s) 309
CseI GACGC 1 cut(s) 43
CspAI ACCGGT 1 cut(s) 190
DdeI CTNAG 1 cut(s) 335
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
DraI TTTAAA 1 cut(s) 214
Eco147I AGGCCT 2 cut(s) 256, 419
Eco24I GRGCYC 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 297
FaiI YATR 2 cut(s) 80, 185
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 3 cut(s) 38, 176, 384
FokI GGATG 1 cut(s) 364
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 3 cut(s) 38, 176, 384
FspBI CTAG 2 cut(s) 252, 260
GluI GCNGC 3 cut(s) 38, 176, 384
HaeIII GGCC 4 cut(s) 223, 256, 311, 419
HapII CCGG 2 cut(s) 41, 191
HgaI GACGC 1 cut(s) 43
Hin1I GRCGYC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 2 cut(s) 54, 359
HpaII CCGG 2 cut(s) 41, 191
HphI GGTGA 2 cut(s) 43, 189
Hpy166II GTNNAC 3 cut(s) 129, 358, 369
Hpy8I GTNNAC 3 cut(s) 129, 358, 369
Hpy99I CGWCG 2 cut(s) 76, 133
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 64, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 275
HpyF3I CTNAG 1 cut(s) 335
Hsp92I GRCGYC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 6 cut(s) 54, 204, 205, 276, 357, 384
Lsp1109I GCAGC 2 cut(s) 162, 395
LweI GCATC 1 cut(s) 170
MaeI CTAG 2 cut(s) 252, 260
MaeIII GTNAC 3 cut(s) 31, 247, 322
MalI GATC 1 cut(s) 392
MboI GATC 1 cut(s) 390
MboII GAAGA 2 cut(s) 16, 49
MflI RGATCY 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 297
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 8 cut(s) 5, 126, 138, 267, 309, 344, 409, 430
MseI TTAA 1 cut(s) 213
MspI CCGG 2 cut(s) 41, 191
MwoI GCNNNNNNNGC 2 cut(s) 167, 275
NdeII GATC 1 cut(s) 390
NmuCI GTSAC 2 cut(s) 31, 247
PceI AGGCCT 2 cut(s) 256, 419
PfeI GAWTC 1 cut(s) 54
PinAI ACCGGT 1 cut(s) 190
PkrI GCNGC 3 cut(s) 39, 177, 385
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 309
PsuI RGATCY 1 cut(s) 390
SalI GTCGAC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 3 cut(s) 38, 176, 384
Sau3AI GATC 1 cut(s) 390
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 1 cut(s) 353
SduI GDGCHC 1 cut(s) 297
SetI ASST 5 cut(s) 99, 149, 177, 307, 388
SfaNI GCATC 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
SseBI AGGCCT 2 cut(s) 256, 419
SsiI CCGC 3 cut(s) 29, 38, 433
SspMI CTAG 2 cut(s) 252, 260
StuI AGGCCT 2 cut(s) 256, 419
TaaI ACNGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 46, 128
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseFI GTSAC 2 cut(s) 31, 247
TseI GCWGC 2 cut(s) 175, 383
Tsp45I GTSAC 2 cut(s) 31, 247
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 128
XspI CTAG 2 cut(s) 252, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.