Rorug07G0341700

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
37635591 .. 37636016
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0341700.1

Sequence Viewer

Length: 426 bp
ATGGGGGATGAGATGGTTCAGGTTCGTAGACAGCTAGGGTGGAAAAATTCATTTACTGTTGATTGTCAAATTCTTAGAGACAGGAAAGGTAAGAGAAGTAGTAGGTCAGGGGGTCTTTGCTTATTATGGTCAGAGGATGTCAGGGTGTCTCTCCAATCTTACTCGGACAGTCACATTGATGTGTTGGTTGGAGAAGGTGATTGTTCTGCTCAATGGCGTTTTACGGGGGTGTATGGACAACCGAAGGCGGAGCATAGACACTTGACGTGGGAGTTGTTACGAAGGCTTCGCGATAAGTGTAACTTACCTTGGGTGTTAGGGGGAGACTTCAATGAGATCATTGTAATCCATGAGAAGGAAGGGGTCCGTTGCGATGAAGTCGACTTATGGATGACTTCAAACAAGCTCTGGGGGATTGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

16.35

Weight (kDa)

6.89

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 28, 381
AccII CGCG 1 cut(s) 291
AciI CCGC 1 cut(s) 248
AcsI RAATTY 2 cut(s) 46, 69
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 2 cut(s) 331, 399
AjiI CACGTC 1 cut(s) 267
AluBI AGCT 2 cut(s) 34, 406
AluI AGCT 2 cut(s) 34, 406
Alw26I GTCTC 3 cut(s) 72, 153, 318
ApoI RAATTY 2 cut(s) 46, 69
AspS9I GGNCC 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 364
BccI CCATC 1 cut(s) 7
BcoDI GTCTC 3 cut(s) 72, 153, 318
BfaI CTAG 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 3 cut(s) 13, 142, 396
BseLI CCNNNNNNNGG 1 cut(s) 355
Bsh1236I CGCG 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 3 cut(s) 72, 153, 318
Bsp143I GATC 1 cut(s) 336
Bsp68I TCGCGA 1 cut(s) 291
BspACI CCGC 1 cut(s) 248
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 58, 170
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 3 cut(s) 13, 142, 396
BstFNI CGCG 1 cut(s) 291
BstKTI GATC 1 cut(s) 339
BstMAI GTCTC 3 cut(s) 72, 153, 318
BstMBI GATC 1 cut(s) 336
BstUI CGCG 1 cut(s) 291
BtgZI GCGATG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 3 cut(s) 13, 142, 396
BtuMI TCGCGA 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 364
CviAII CATG 1 cut(s) 350
CviJI RGCY 3 cut(s) 34, 286, 406
CviKI_1 RGCY 3 cut(s) 34, 286, 406
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 338
DpnII GATC 1 cut(s) 336
EciI GGCGGA 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 1 cut(s) 353
FaiI YATR 5 cut(s) 127, 234, 255, 351, 388
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FatI CATG 1 cut(s) 349
FblI GTMKAC 2 cut(s) 28, 381
FokI GGATG 3 cut(s) 20, 149, 403
FspBI CTAG 1 cut(s) 35
Hin1II CATG 1 cut(s) 353
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 29, 382
Hpy188I TCNGA 2 cut(s) 133, 166
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 2 cut(s) 29, 382
HpyAV CCTTC 5 cut(s) 188, 238, 276, 349, 353
HpyCH4III ACNGT 2 cut(s) 58, 170
HpyCH4IV ACGT 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 1 cut(s) 353
Kzo9I GATC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 5 cut(s) 5, 67, 93, 127, 394
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 3 cut(s) 170, 276, 299
MalI GATC 1 cut(s) 338
MboI GATC 1 cut(s) 336
MluCI AATT 2 cut(s) 46, 69
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 1 cut(s) 127
MslI CAYNNNNRTG 2 cut(s) 177, 179
MvnI CGCG 1 cut(s) 291
NdeII GATC 1 cut(s) 336
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 1 cut(s) 170
NruI TCGCGA 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 1 cut(s) 364
RruI TCGCGA 1 cut(s) 291
RseI CAYNNNNRTG 2 cut(s) 177, 179
SalI GTCGAC 1 cut(s) 380
Sau3AI GATC 1 cut(s) 336
Sau96I GGNCC 1 cut(s) 364
SetI ASST 8 cut(s) 24, 36, 91, 107, 199, 269, 310, 408
SinI GGWCC 1 cut(s) 364
SmiMI CAYNNNNRTG 2 cut(s) 177, 179
Sse9I AATT 2 cut(s) 46, 69
SsiI CCGC 1 cut(s) 248
SspMI CTAG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 58, 170
TaiI ACGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 381
TasI AATT 2 cut(s) 46, 69
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 39, 390
TspGWI ACGGA 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 2 cut(s) 46, 69
XmiI GTMKAC 2 cut(s) 28, 381
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.