Rmu_sc0002343.1_g000030

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002343.1
Physical Location & Seq
Forward (+)
151656 .. 152102
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002343.1_g000030.1.cds

Sequence Viewer

Length: 447 bp
atgttggaccagaaaatgttgtttagattgtcactgacaatgcatcagcatttaaaaaggctggaagggaactacagaaaaaatatatgttgttttggatcccgtgtgctgcccattgcatcgattttgatatttgaagatatcgtgaagcaagagactgtttccactgtcgtcaaatgggttcaaagtgtaactaactacatctacaatcatggttgggtattggctgaaatgaggagcatcacgaaggaagatttgattcgaccgggtaaaactcgatttgcgacaaatcacattgccatcgacagtatcttgaagaagaaatctgatttgagaaaattatttacaattagcgcatggaatgagaatgcagcgagcaggaccagagatggcaaaaggatagaaaaagagtcctcgatgggacattttgggatggcatggaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

17.21

Weight (kDa)

9.96

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 93, 106
AgsI TTSAA 3 cut(s) 137, 185, 316
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 2 cut(s) 93, 106
ApeKI GCWGC 2 cut(s) 109, 371
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 7, 381
AsuC2I CCSGG 1 cut(s) 267
AvaII GGWCC 2 cut(s) 7, 381
BamHI GGATCC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 96, 383
BccI CCATC 4 cut(s) 308, 383, 412, 427
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 73
BisI GCNGC 2 cut(s) 110, 372
BlsI GCNGC 2 cut(s) 111, 373
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 2 cut(s) 7, 381
BmgT120I GGNCC 2 cut(s) 7, 381
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 3 cut(s) 52, 128, 249
BpuMI CCSGG 1 cut(s) 267
Bsa29I ATCGAT 1 cut(s) 122
Bse3DI GCAATG 2 cut(s) 114, 294
BseCI ATCGAT 1 cut(s) 122
BseGI GGATG 1 cut(s) 438
BseMI GCAATG 2 cut(s) 114, 294
BseRI GAGGAG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 96, 383
Bsh1285I CGRYCG 1 cut(s) 266
BshVI ATCGAT 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 373
Bsp143I GATC 1 cut(s) 98
BspDI ATCGAT 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 2 cut(s) 93, 106
BsrDI GCAATG 2 cut(s) 114, 294
BssMI GATC 1 cut(s) 98
Bst4CI ACNGT 3 cut(s) 160, 169, 308
BstC8I GCNNGC 1 cut(s) 376
BstF5I GGATG 1 cut(s) 438
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 98
BstMCI CGRYCG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 96, 383
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
Bsu15I ATCGAT 1 cut(s) 122
BsuTUI ATCGAT 1 cut(s) 122
BtsCI GGATG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 32, 165
Cac8I GCNNGC 1 cut(s) 376
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 7, 381
ClaI ATCGAT 1 cut(s) 122
CviAII CATG 3 cut(s) 212, 357, 438
CviJI RGCY 2 cut(s) 61, 227
CviKI_1 RGCY 2 cut(s) 61, 227
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
DraI TTTAAA 1 cut(s) 54
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 7, 381
EcoRV GATATC 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 45
FaeI CATG 3 cut(s) 215, 360, 441
FaiI YATR 5 cut(s) 86, 88, 213, 358, 439
FaqI GGGAC 1 cut(s) 435
FatI CATG 3 cut(s) 211, 356, 437
Fnu4HI GCNGC 2 cut(s) 110, 372
Fsp4HI GCNGC 2 cut(s) 110, 372
GlaI GCGC 1 cut(s) 355
GluI GCNGC 2 cut(s) 110, 372
HapII CCGG 1 cut(s) 266
HhaI GCGC 1 cut(s) 356
Hin1II CATG 3 cut(s) 215, 360, 441
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HinfI GANTC 2 cut(s) 259, 410
HpaII CCGG 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 3 cut(s) 145, 244, 313
HpyAV CCTTC 2 cut(s) 59, 241
HpyCH4III ACNGT 3 cut(s) 160, 169, 308
HpyCH4V TGCA 3 cut(s) 43, 119, 371
Hsp92II CATG 3 cut(s) 215, 360, 441
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 237
LpnPI CCDG 5 cut(s) 23, 47, 279, 364, 397
Lsp1109I GCAGC 2 cut(s) 96, 383
LweI GCATC 3 cut(s) 52, 128, 249
MaeIII GTNAC 2 cut(s) 30, 190
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 4 cut(s) 149, 263, 328, 331
MflI RGATCY 1 cut(s) 98
MluCI AATT 2 cut(s) 338, 348
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 2 cut(s) 228, 424
Mph1103I ATGCAT 1 cut(s) 45
MseI TTAA 1 cut(s) 53
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 373
NciI CCSGG 1 cut(s) 267
NdeII GATC 1 cut(s) 98
NlaIII CATG 3 cut(s) 215, 360, 441
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 45
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 111, 373
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 7, 381
PsuI RGATCY 1 cut(s) 98
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 2 cut(s) 110, 372
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 2 cut(s) 7, 381
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 267
SfaNI GCATC 3 cut(s) 52, 128, 249
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 2 cut(s) 7, 381
Sse9I AATT 2 cut(s) 338, 348
StyD4I CCNGG 1 cut(s) 265
TaaI ACNGT 3 cut(s) 160, 169, 308
TaqI TCGA 5 cut(s) 122, 262, 277, 303, 416
TasI AATT 2 cut(s) 338, 348
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 2 cut(s) 39, 172
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 2 cut(s) 109, 371
Tsp45I GTSAC 1 cut(s) 30
TspRI CASTG 2 cut(s) 39, 172
VpaK11BI GGWCC 2 cut(s) 7, 381
Zsp2I ATGCAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.