pycom10g02160

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000220
Physical Location & Seq
Forward (+)
2290025 .. 2292707
2683 bp
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UTR
Exon/CDS
Intron
pycom10g02160.1

Sequence Viewer

Length: 381 bp
ATGTCTCATCTCTTATTGAATGGTAGATCATATGGGACTGATGCACCAACTGTGAGAAAGTTAGCAATCAAAGTATTATCACAAATAGCTTCCTCATCTGTTTGTGAAAGAAATTGGAGTACATTTGCACTCATACACACAAAGCAAAGAAATAGGTTGGCTCATAGTAGGTTGGAAAAATTAGTTTATTGCTACTACAACATGAAGCTTCAAATCCGAGATAAGGAAGCAGAAATAGATCATGTCGACCGTGGTGACCCACTAGATGTGTTTGATATTGTTGCTGAAGATGATGATACAGAGGGTAACCAACTTTATCAATGGATTAGACCTTTTCATTTAGATGATGACGAAGGCAACCTAGCTCTAAGAGTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

127

Amino Acids

14.65

Weight (kDa)

5.67

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 11 - 68 3e-09 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 2 cut(s) 19, 212
AluBI AGCT 3 cut(s) 89, 208, 365
AluI AGCT 3 cut(s) 89, 208, 365
Alw26I GTCTC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 263, 362
BmsI GCATC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 223
Bsh1285I CGRYCG 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 250
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 26, 238
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 26, 238
Bst4CI ACNGT 2 cut(s) 52, 251
BstDEI CTNAG 1 cut(s) 368
BstDSI CCRYGG 1 cut(s) 250
BstEII GGTNACC 2 cut(s) 254, 305
BstKTI GATC 2 cut(s) 29, 241
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 26, 238
BstMCI CGRYCG 1 cut(s) 250
BstPI GGTNACC 2 cut(s) 254, 305
BtgI CCRYGG 1 cut(s) 250
Csp6I GTAC 1 cut(s) 120
CviAII CATG 2 cut(s) 202, 242
CviJI RGCY 4 cut(s) 89, 161, 208, 365
CviKI_1 RGCY 4 cut(s) 89, 161, 208, 365
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 368
DpnI GATC 2 cut(s) 28, 240
DpnII GATC 2 cut(s) 26, 238
Eco57I CTGAAG 1 cut(s) 306
Eco91I GGTNACC 2 cut(s) 254, 305
EcoO65I GGTNACC 2 cut(s) 254, 305
FaeI CATG 2 cut(s) 205, 245
FaiI YATR 6 cut(s) 31, 33, 134, 165, 203, 243
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 201, 241
FauNDI CATATG 1 cut(s) 31
FblI GTMKAC 1 cut(s) 246
FspBI CTAG 2 cut(s) 263, 362
Hin1II CATG 2 cut(s) 205, 245
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 206
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 2 cut(s) 52, 251
HpyCH4V TGCA 2 cut(s) 44, 128
HpyF3I CTNAG 1 cut(s) 368
Hsp92II CATG 2 cut(s) 205, 245
Kzo9I GATC 2 cut(s) 26, 238
LweI GCATC 1 cut(s) 31
MaeI CTAG 2 cut(s) 263, 362
MaeIII GTNAC 2 cut(s) 254, 305
MalI GATC 2 cut(s) 28, 240
MboI GATC 2 cut(s) 26, 238
MboII GAAGA 1 cut(s) 299
MluCI AATT 2 cut(s) 112, 179
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 2 cut(s) 103, 295
MslI CAYNNNNRTG 1 cut(s) 342
NdeI CATATG 1 cut(s) 31
NdeII GATC 2 cut(s) 26, 238
NlaIII CATG 2 cut(s) 205, 245
NmuCI GTSAC 1 cut(s) 254
PspEI GGTNACC 2 cut(s) 254, 305
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 342
SalI GTCGAC 1 cut(s) 245
Sau3AI GATC 2 cut(s) 26, 238
SetI ASST 7 cut(s) 91, 158, 173, 210, 334, 363, 367
SfaNI GCATC 1 cut(s) 31
SgeI CNNG 6 cut(s) 214, 230, 254, 263, 275, 374
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 2 cut(s) 112, 179
SspMI CTAG 2 cut(s) 263, 362
TaaI ACNGT 2 cut(s) 52, 251
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 112, 179
TatI WGTACW 1 cut(s) 119
TseFI GTSAC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 218, 326
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 2 cut(s) 263, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.