Rmu_sc0003556.1_g000020

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003556.1
Physical Location & Seq
Reverse (-)
82504 .. 83279
776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003556.1_g000020.1.cds

Sequence Viewer

Length: 489 bp
atgtttataaaactatacaaatggccccaaattgatcagggcccaaaagtgccaccagagatcaaaacagaggtactagcatggataaagagaaaagattctattaagcaagaaaaggcagctgttcaagatgatattagagaagaactccgcaatgattatcttggcaatcaaacaagtctgtacaatgacgatgacgacaatgatgatgatgatgatgatggatttaagtatccaccagacatacaccctgcagaacgacaagattatcgtgctgcagtaagaccatcaaccatagatcgtggtggaggtgaaagatatgaatatggacaatcttctgtggatggaggattccaatttacctatgaaggtaattttgatcatgccacccaagatgaagaccacggagtgagaacagctggtgatggtggtcaagagaagaccctgctcaagagaagacccgatatgagaggaggactagaggtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

162

Amino Acids

18.56

Weight (kDa)

4.61

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AciI CCGC 1 cut(s) 151
AdeI CACNNNGTG 1 cut(s) 409
AfaI GTAC 2 cut(s) 75, 185
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 2 cut(s) 122, 419
AluI AGCT 2 cut(s) 122, 419
AoxI GGCC 2 cut(s) 23, 40
ApaI GGGCCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 119, 275
Asp700I GAANNNNTTC 1 cut(s) 97
AspS9I GGNCC 3 cut(s) 24, 40, 41
AsuHPI GGTGA 2 cut(s) 323, 434
BaeGI GKGCMC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 44
BbsI GAAGAC 3 cut(s) 405, 446, 463
BbvI GCAGC 2 cut(s) 131, 262
BccI CCATC 4 cut(s) 215, 295, 338, 419
BciVI GTATCC 1 cut(s) 243
BclI TGATCA 2 cut(s) 34, 379
BfaI CTAG 2 cut(s) 77, 479
BfmI CTRYAG 2 cut(s) 252, 276
BfuI GTATCC 1 cut(s) 243
BisI GCNGC 2 cut(s) 120, 276
BlsI GCNGC 2 cut(s) 121, 277
BmgT120I GGNCC 3 cut(s) 24, 40, 41
BmiI GGNNCC 2 cut(s) 26, 42
BpiI GAAGAC 3 cut(s) 405, 446, 463
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpuEI CTTGAG 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 486
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 2 cut(s) 131, 262
BshFI GGCC 2 cut(s) 25, 42
BsnI GGCC 2 cut(s) 25, 42
Bsp120I GGGCCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 4 cut(s) 34, 60, 298, 379
BspACI CCGC 1 cut(s) 151
BspANI GGCC 2 cut(s) 25, 42
BspLI GGNNCC 2 cut(s) 26, 42
BspMAI CTGCAG 2 cut(s) 256, 280
BsrDI GCAATG 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 4 cut(s) 34, 60, 298, 379
BstAUI TGTACA 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 403
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 4 cut(s) 37, 63, 301, 382
BstMBI GATC 4 cut(s) 34, 60, 298, 379
BstSFI CTRYAG 2 cut(s) 252, 276
BstSLI GKGCMC 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 131, 262
BstV2I GAAGAC 3 cut(s) 405, 446, 463
BsuI GTATCC 1 cut(s) 243
BsuRI GGCC 2 cut(s) 25, 42
BtgI CCRYGG 1 cut(s) 403
BtsCI GGATG 1 cut(s) 349
Cfr13I GGNCC 3 cut(s) 24, 40, 41
Csp6I GTAC 2 cut(s) 74, 184
CviAII CATG 2 cut(s) 81, 383
CviJI RGCY 4 cut(s) 25, 42, 122, 419
CviKI_1 RGCY 4 cut(s) 25, 42, 122, 419
CviQI GTAC 2 cut(s) 74, 184
DpnI GATC 4 cut(s) 36, 62, 300, 381
DpnII GATC 4 cut(s) 34, 60, 298, 379
DraIII CACNNNGTG 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 2 cut(s) 84, 386
FatI CATG 2 cut(s) 80, 382
FbaI TGATCA 2 cut(s) 34, 379
Fnu4HI GCNGC 2 cut(s) 120, 276
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 120, 276
FspBI CTAG 2 cut(s) 77, 479
GluI GCNGC 2 cut(s) 120, 276
HaeIII GGCC 2 cut(s) 25, 42
Hin1II CATG 2 cut(s) 84, 386
HinfI GANTC 2 cut(s) 98, 351
HphI GGTGA 2 cut(s) 323, 434
Hpy188III TCNNGA 3 cut(s) 128, 434, 451
HpyAV CCTTC 1 cut(s) 362
HpyCH4V TGCA 2 cut(s) 254, 278
Hsp92II CATG 2 cut(s) 84, 386
Ksp22I TGATCA 2 cut(s) 34, 379
Kzo9I GATC 4 cut(s) 34, 60, 298, 379
LpnPI CCDG 6 cut(s) 23, 69, 252, 264, 405, 458
Lsp1109I GCAGC 2 cut(s) 131, 262
MaeI CTAG 2 cut(s) 77, 479
MalI GATC 4 cut(s) 36, 62, 300, 381
MboI GATC 4 cut(s) 34, 60, 298, 379
MboII GAAGA 5 cut(s) 155, 327, 410, 451, 468
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 3 cut(s) 30, 356, 373
MnlI CCTC 6 cut(s) 64, 302, 341, 464, 467, 475
MroXI GAANNNNTTC 1 cut(s) 97
MseI TTAA 2 cut(s) 105, 228
MspA1I CMGCKG 2 cut(s) 122, 419
NdeII GATC 4 cut(s) 34, 60, 298, 379
NlaIII CATG 2 cut(s) 84, 386
NlaIV GGNNCC 2 cut(s) 26, 42
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 98, 351
PkrI GCNGC 2 cut(s) 121, 277
PsiI TTATAA 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 26, 42
PspOMI GGGCCC 1 cut(s) 40
PspPI GGNCC 3 cut(s) 24, 40, 41
PstI CTGCAG 2 cut(s) 256, 280
PvuII CAGCTG 2 cut(s) 122, 419
RsaI GTAC 2 cut(s) 75, 185
RsaNI GTAC 2 cut(s) 74, 184
SaqAI TTAA 2 cut(s) 105, 228
SatI GCNGC 2 cut(s) 120, 276
Sau3AI GATC 4 cut(s) 34, 60, 298, 379
Sau96I GGNCC 3 cut(s) 24, 40, 41
SduI GDGCHC 1 cut(s) 44
SetI ASST 7 cut(s) 75, 124, 313, 365, 373, 421, 486
SfcI CTRYAG 2 cut(s) 252, 276
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 3 cut(s) 30, 356, 373
SsiI CCGC 1 cut(s) 151
SspMI CTAG 2 cut(s) 77, 479
TasI AATT 3 cut(s) 30, 356, 373
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 2 cut(s) 98, 351
Tru1I TTAA 2 cut(s) 105, 228
Tru9I TTAA 2 cut(s) 105, 228
TseI GCWGC 2 cut(s) 119, 275
TspDTI ATGAA 3 cut(s) 336, 381, 411
TspGWI ACGGA 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 2 cut(s) 77, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.