Rmu_sc0000578.1_g000002

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000578.1
OG0000220
Physical Location & Seq
Forward (+)
6665 .. 7267
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000578.1_g000002.1.cds

Sequence Viewer

Length: 603 bp
atgaagctgcggctgcgagataaacaggcaaagaataatgtggtcattgaaaacaactatatagatctacttcatgttgcaagcgagccgcttgataatggcattgatccacttcataattggattatgcttgcacacctcgatgatgaagctggaagacctcttccacaagttgtagaaactgcaactaatgctggaatcaacgtagagagagtcttatttgaagaagttgttaaaaacccagaagataattcagatagtgatgatgtgtggggtgatacgtcaactccagatagttttgaagatggtggagagggtggaagcggaataggtgatggaggattgcaatttacctgtgaagtttattttgatcataccacccaagatgaagaccacggagtgagaacagctggtcattgtgctcaagagaagacccgatatgggaggaggactagaggtgcaactgatgatcaaaggaccccatctgatgtttcttcaattgccttaagttttgactctatcggtttagtcacagagcgcagtgggatctcaaatgaatctcatgaaggcaacaatcaatttggttatgatgcttatggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

200

Amino Acids

21.93

Weight (kDa)

4.41

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 10, 89, 324
AclWI GGATC 2 cut(s) 101, 554
AdeI CACNNNGTG 1 cut(s) 400
AfiI CCNNNNNNNGG 1 cut(s) 441
AflII CTTAAG 1 cut(s) 505
AgsI TTSAA 4 cut(s) 50, 224, 302, 498
AluBI AGCT 3 cut(s) 7, 152, 410
AluI AGCT 3 cut(s) 7, 152, 410
Alw21I GWGCWC 1 cut(s) 424
AlwI GGATC 2 cut(s) 101, 554
ApeKI GCWGC 2 cut(s) 7, 13
AspLEI GCGC 1 cut(s) 540
AspS9I GGNCC 1 cut(s) 477
AsuHPI GGTGA 2 cut(s) 287, 344
AvaII GGWCC 1 cut(s) 477
BbsI GAAGAC 3 cut(s) 163, 396, 437
Bbv12I GWGCWC 1 cut(s) 424
BccI CCATC 3 cut(s) 299, 329, 490
BclI TGATCA 2 cut(s) 370, 469
BfaI CTAG 1 cut(s) 453
BfrI CTTAAG 1 cut(s) 505
BglII AGATCT 1 cut(s) 64
BisI GCNGC 4 cut(s) 8, 11, 14, 89
BlsI GCNGC 4 cut(s) 9, 12, 15, 90
Bme18I GGWCC 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 477
BmiI GGNNCC 1 cut(s) 479
BmsI GCATC 1 cut(s) 580
BpiI GAAGAC 3 cut(s) 163, 396, 437
BpmI CTGGAG 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 408
BsaJI CCNNGG 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 441
BseRI GAGGAG 1 cut(s) 460
BsiHKAI GWGCWC 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 5 cut(s) 64, 106, 370, 469, 546
BspACI CCGC 3 cut(s) 10, 89, 324
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 479
BspPI GGATC 2 cut(s) 101, 554
BspTI CTTAAG 1 cut(s) 505
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 5 cut(s) 64, 106, 370, 469, 546
Bst6I CTCTTC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 505
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 82, 86, 132
BstDSI CCRYGG 1 cut(s) 394
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 5 cut(s) 67, 109, 373, 472, 549
BstMBI GATC 5 cut(s) 64, 106, 370, 469, 546
BstMWI GCNNNNNNNGC 2 cut(s) 13, 191
BstV2I GAAGAC 3 cut(s) 163, 396, 437
BstX2I RGATCY 2 cut(s) 64, 546
BstYI RGATCY 2 cut(s) 64, 546
BtgI CCRYGG 1 cut(s) 394
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 1 cut(s) 547
Cac8I GCNNGC 3 cut(s) 82, 86, 132
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 540
Cfr13I GGNCC 1 cut(s) 477
CviAII CATG 2 cut(s) 74, 563
CviJI RGCY 5 cut(s) 7, 13, 88, 152, 410
CviKI_1 RGCY 5 cut(s) 7, 13, 88, 152, 410
DpnI GATC 5 cut(s) 66, 108, 372, 471, 548
DpnII GATC 5 cut(s) 64, 106, 370, 469, 546
DraIII CACNNNGTG 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 477
FaeI CATG 2 cut(s) 77, 566
FatI CATG 2 cut(s) 73, 562
FbaI TGATCA 2 cut(s) 370, 469
Fnu4HI GCNGC 4 cut(s) 8, 11, 14, 89
Fsp4HI GCNGC 4 cut(s) 8, 11, 14, 89
FspBI CTAG 1 cut(s) 453
GlaI GCGC 1 cut(s) 539
GluI GCNGC 4 cut(s) 8, 11, 14, 89
GsuI CTGGAG 1 cut(s) 273
HhaI GCGC 1 cut(s) 540
Hin1II CATG 2 cut(s) 77, 566
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 4 cut(s) 198, 213, 515, 557
HphI GGTGA 2 cut(s) 287, 344
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 2 cut(s) 256, 487
Hpy188III TCNNGA 3 cut(s) 290, 425, 563
Hpy8I GTNNAC 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 560
HpyCH4IV ACGT 2 cut(s) 204, 281
HpyCH4V TGCA 5 cut(s) 80, 134, 185, 346, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 191
HpySE526I ACGT 2 cut(s) 204, 281
Hsp92II CATG 2 cut(s) 77, 566
HspAI GCGC 1 cut(s) 538
Ksp22I TGATCA 2 cut(s) 370, 469
Kzo9I GATC 5 cut(s) 64, 106, 370, 469, 546
LpnPI CCDG 7 cut(s) 11, 138, 180, 255, 303, 367, 396
LweI GCATC 1 cut(s) 580
MaeI CTAG 1 cut(s) 453
MaeII ACGT 2 cut(s) 204, 281
MaeIII GTNAC 1 cut(s) 529
MalI GATC 5 cut(s) 66, 108, 372, 471, 548
MboI GATC 5 cut(s) 64, 106, 370, 469, 546
MboII GAAGA 8 cut(s) 155, 168, 236, 257, 314, 401, 442, 486
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 2 cut(s) 64, 546
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 5 cut(s) 118, 250, 347, 498, 578
MlyI GAGTC 2 cut(s) 222, 509
MnlI CCTC 7 cut(s) 149, 171, 307, 332, 438, 441, 449
MseI TTAA 2 cut(s) 234, 506
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 410
MspCI CTTAAG 1 cut(s) 505
MunI CAATTG 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 13, 191
NdeII GATC 5 cut(s) 64, 106, 370, 469, 546
NlaIII CATG 2 cut(s) 77, 566
NlaIV GGNNCC 1 cut(s) 479
NmuCI GTSAC 1 cut(s) 529
PagI TCATGA 1 cut(s) 562
PfeI GAWTC 2 cut(s) 198, 557
PkrI GCNGC 4 cut(s) 9, 12, 15, 90
PleI GAGTC 2 cut(s) 221, 509
PpsI GAGTC 2 cut(s) 221, 509
PpuMI RGGWCCY 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 477
PspN4I GGNNCC 1 cut(s) 479
PspPI GGNCC 1 cut(s) 477
PspPPI RGGWCCY 1 cut(s) 477
PsuI RGATCY 2 cut(s) 64, 546
PvuII CAGCTG 1 cut(s) 410
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 234, 506
SatI GCNGC 4 cut(s) 8, 11, 14, 89
Sau3AI GATC 5 cut(s) 64, 106, 370, 469, 546
Sau96I GGNCC 1 cut(s) 477
SchI GAGTC 2 cut(s) 222, 509
SduI GDGCHC 1 cut(s) 424
SfaNI GCATC 1 cut(s) 580
SinI GGWCC 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 423, 505
SmoI CTYRAG 2 cut(s) 423, 505
Sse9I AATT 5 cut(s) 118, 250, 347, 498, 578
SsiI CCGC 3 cut(s) 10, 89, 324
SspMI CTAG 1 cut(s) 453
TaiI ACGT 2 cut(s) 207, 284
TaqI TCGA 1 cut(s) 141
TasI AATT 5 cut(s) 118, 250, 347, 498, 578
TauI GCSGC 2 cut(s) 13, 91
TfiI GAWTC 2 cut(s) 198, 557
Tru1I TTAA 2 cut(s) 234, 506
Tru9I TTAA 2 cut(s) 234, 506
TscAI CASTG 1 cut(s) 547
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 2 cut(s) 7, 13
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 7 cut(s) 17, 62, 104, 162, 402, 570, 579
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 1 cut(s) 547
Vha464I CTTAAG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 477
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.