Rmu_sc0000821.1_g000011

intracellular protein transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000821.1
OG0000220
Physical Location & Seq
Reverse (-)
40115 .. 42582
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000821.1_g000011.1.cds

Sequence Viewer

Length: 627 bp
ctgtggcagaaggaggccaagatcttgttcctcgggctcgataatgccggcaagaccttgcttcacatgctcaaagatgagcttcacaaactgctggagcttgaaactgatggggttttggataggttggatgatctgggagaccaatttgatatgaaagctttggtctttcacatttctggagtcttggcaactccagatagttctgatgatggtggagatggtggaagcggaacaggtggtggaggtgaaatatatgaatatggacaatcttctgtggatggaggattccaatttacctgtgaaggtaattttgatcatgccacccaagatgaagaccacagagtgagaacagctggtcatggtgctcaagagaagacccgttatgggaggaggactagaggtgcaaccgatgatcaaagtaccacatctgatgtttcttcaattgccttaagtttttactctatcagtttaggcacagagcgcagtgggatctcaaatgaatctcatgaaggcaacaatcaatttggttatgatgcttatggatataatcaatatggagaagtatatgatcagtcatctagttgggttcatccttattatccctttataggtatttatatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

208

Amino Acids

22.84

Weight (kDa)

4.53

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 500
AdeI CACNNNGTG 1 cut(s) 346
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 2 cut(s) 387, 611
AflII CTTAAG 1 cut(s) 451
AgsI TTSAA 2 cut(s) 104, 444
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 4 cut(s) 82, 100, 161, 356
AluI AGCT 4 cut(s) 82, 100, 161, 356
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 500
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 486
AsuHPI GGTGA 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 32
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 342, 383
Bbv12I GWGCWC 1 cut(s) 370
BccI CCATC 4 cut(s) 104, 206, 215, 275
BclI TGATCA 3 cut(s) 316, 415, 571
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 2 cut(s) 399, 582
BfrI CTTAAG 1 cut(s) 451
BglII AGATCT 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 32
BmsI GCATC 1 cut(s) 526
BpiI GAAGAC 2 cut(s) 342, 383
BpmI CTGGAG 3 cut(s) 116, 180, 201
BpuEI CTTGAG 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 387, 611
Bse118I RCCGGY 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 3 cut(s) 136, 286, 592
BseLI CCNNNNNNNGG 2 cut(s) 387, 611
BseRI GAGGAG 1 cut(s) 406
BshFI GGCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 387, 611
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 17
Bso31I GGTCTC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 39, 370
Bsp143I GATC 6 cut(s) 21, 133, 316, 415, 492, 571
BspACI CCGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 17
BspHI TCATGA 1 cut(s) 508
BspPI GGATC 1 cut(s) 500
BspTI CTTAAG 1 cut(s) 451
BspTNI GGTCTC 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 6 cut(s) 21, 133, 316, 415, 492, 571
BstAFI CTTAAG 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 49
BstF5I GGATG 3 cut(s) 136, 286, 592
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 6 cut(s) 24, 136, 319, 418, 495, 574
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 6 cut(s) 21, 133, 316, 415, 492, 571
BstMWI GCNNNNNNNGC 2 cut(s) 67, 483
BstNSI RCATGY 1 cut(s) 70
BstV2I GAAGAC 2 cut(s) 342, 383
BstX2I RGATCY 2 cut(s) 21, 492
BstYI RGATCY 2 cut(s) 21, 492
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 3 cut(s) 136, 286, 592
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 493
Cac8I GCNNGC 1 cut(s) 49
CciI TCATGA 1 cut(s) 508
CfoI GCGC 1 cut(s) 486
Cfr10I RCCGGY 1 cut(s) 47
Csp6I GTAC 1 cut(s) 423
CviAII CATG 4 cut(s) 67, 320, 362, 509
CviJI RGCY 6 cut(s) 17, 37, 82, 100, 161, 356
CviKI_1 RGCY 6 cut(s) 17, 37, 82, 100, 161, 356
CviQI GTAC 1 cut(s) 423
DpnI GATC 6 cut(s) 23, 135, 318, 417, 494, 573
DpnII GATC 6 cut(s) 21, 133, 316, 415, 492, 571
DraIII CACNNNGTG 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 4 cut(s) 70, 323, 365, 512
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 4 cut(s) 66, 319, 361, 508
FbaI TGATCA 3 cut(s) 316, 415, 571
FokI GGATG 3 cut(s) 143, 293, 579
FriOI GRGCYC 1 cut(s) 39
FspBI CTAG 2 cut(s) 399, 582
GlaI GCGC 1 cut(s) 485
GsuI CTGGAG 3 cut(s) 116, 180, 201
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 48
HhaI GCGC 1 cut(s) 486
Hin1II CATG 4 cut(s) 70, 323, 365, 512
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 3 cut(s) 183, 288, 503
HpaII CCGG 1 cut(s) 48
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 208, 433
Hpy188III TCNNGA 4 cut(s) 180, 197, 371, 509
HpyAV CCTTC 3 cut(s) 4, 299, 506
HpyCH4V TGCA 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 483
Hsp92II CATG 4 cut(s) 70, 323, 365, 512
HspAI GCGC 1 cut(s) 484
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Ksp22I TGATCA 3 cut(s) 316, 415, 571
Kzo9I GATC 6 cut(s) 21, 133, 316, 415, 492, 571
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 8 cut(s) 61, 80, 122, 165, 210, 222, 313, 342
LweI GCATC 1 cut(s) 526
MaeI CTAG 2 cut(s) 399, 582
MalI GATC 6 cut(s) 23, 135, 318, 417, 494, 573
MboI GATC 6 cut(s) 21, 133, 316, 415, 492, 571
MboII GAAGA 4 cut(s) 264, 347, 388, 432
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 2 cut(s) 21, 492
MhlI GDGCHC 2 cut(s) 39, 370
MluCI AATT 5 cut(s) 146, 293, 310, 444, 524
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 7 cut(s) 7, 41, 239, 278, 384, 387, 395
MroNI GCCGGC 1 cut(s) 47
MseI TTAA 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 451
MspI CCGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 444
MwoI GCNNNNNNNGC 2 cut(s) 67, 483
NaeI GCCGGC 1 cut(s) 49
NdeII GATC 6 cut(s) 21, 133, 316, 415, 492, 571
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 4 cut(s) 70, 323, 365, 512
NspI RCATGY 1 cut(s) 70
PagI TCATGA 1 cut(s) 508
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 288, 503
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PsuI RGATCY 2 cut(s) 21, 492
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
SaqAI TTAA 1 cut(s) 452
Sau3AI GATC 6 cut(s) 21, 133, 316, 415, 492, 571
SchI GAGTC 1 cut(s) 192
SduI GDGCHC 2 cut(s) 39, 370
SfaNI GCATC 1 cut(s) 526
SmlI CTYRAG 2 cut(s) 369, 451
SmoI CTYRAG 2 cut(s) 369, 451
Sse9I AATT 5 cut(s) 146, 293, 310, 444, 524
SsiI CCGC 1 cut(s) 231
SspMI CTAG 2 cut(s) 399, 582
TaqI TCGA 1 cut(s) 39
TasI AATT 5 cut(s) 146, 293, 310, 444, 524
TfiI GAWTC 2 cut(s) 288, 503
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TscAI CASTG 1 cut(s) 493
TspDTI ATGAA 6 cut(s) 170, 273, 348, 516, 525, 581
TspRI CASTG 1 cut(s) 493
Vha464I CTTAAG 1 cut(s) 451
XceI RCATGY 1 cut(s) 70
XspI CTAG 2 cut(s) 399, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.