Belongs to the MCM family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 181, 1209 |
| AccII | CGCG | 1 cut(s) | 882 |
| AclWI | GGATC | 1 cut(s) | 617 |
| AcoI | YGGCCR | 3 cut(s) | 114, 479, 1146 |
| AcsI | RAATTY | 2 cut(s) | 328, 343 |
| AcuI | CTGAAG | 2 cut(s) | 192, 759 |
| AcyI | GRCGYC | 4 cut(s) | 155, 419, 555, 1086 |
| AfaI | GTAC | 2 cut(s) | 796, 955 |
| AfeI | AGCGCT | 1 cut(s) | 1062 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 31, 85, 176, 506, 1101, 1191, 1219, 1220 |
| AflII | CTTAAG | 1 cut(s) | 982 |
| AgsI | TTSAA | 3 cut(s) | 545, 583, 975 |
| AjnI | CCWGG | 3 cut(s) | 147, 235, 1184 |
| AluBI | AGCT | 4 cut(s) | 668, 1138, 1157, 1199 |
| AluI | AGCT | 4 cut(s) | 668, 1138, 1157, 1199 |
| Alw21I | GWGCWC | 1 cut(s) | 910 |
| Alw26I | GTCTC | 3 cut(s) | 80, 146, 245 |
| AlwI | GGATC | 1 cut(s) | 617 |
| Ama87I | CYCGRG | 1 cut(s) | 1205 |
| Aor51HI | AGCGCT | 1 cut(s) | 1062 |
| AoxI | GGCC | 7 cut(s) | 87, 114, 392, 479, 497, 1146, 1267 |
| ApeKI | GCWGC | 3 cut(s) | 403, 1180, 1259 |
| ApoI | RAATTY | 2 cut(s) | 328, 343 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 354 |
| AspA2I | CCTAGG | 2 cut(s) | 407, 485 |
| AspLEI | GCGC | 3 cut(s) | 414, 1017, 1063 |
| AspS9I | GGNCC | 1 cut(s) | 1171 |
| AsuC2I | CCSGG | 2 cut(s) | 1206, 1207 |
| AsuHPI | GGTGA | 4 cut(s) | 251, 419, 524, 545 |
| AsuII | TTCGAA | 1 cut(s) | 98 |
| AvaI | CYCGRG | 1 cut(s) | 1205 |
| AvaII | GGWCC | 1 cut(s) | 1171 |
| AvrII | CCTAGG | 2 cut(s) | 407, 485 |
| BaeGI | GKGCMC | 3 cut(s) | 184, 1206, 1214 |
| BanI | GGYRCC | 2 cut(s) | 181, 1209 |
| BanII | GRGCYC | 1 cut(s) | 1095 |
| BbsI | GAAGAC | 3 cut(s) | 679, 882, 923 |
| Bbv12I | GWGCWC | 1 cut(s) | 910 |
| BbvI | GCAGC | 3 cut(s) | 390, 1167, 1246 |
| BccI | CCATC | 3 cut(s) | 446, 815, 1138 |
| BceAI | ACGGC | 3 cut(s) | 102, 532, 1099 |
| BciT130I | CCWGG | 3 cut(s) | 149, 237, 1186 |
| BclI | TGATCA | 2 cut(s) | 856, 946 |
| BcnI | CCSGG | 2 cut(s) | 1206, 1207 |
| BcoDI | GTCTC | 3 cut(s) | 80, 146, 245 |
| BfaI | CTAG | 7 cut(s) | 27, 294, 408, 446, 486, 495, 930 |
| BfmI | CTRYAG | 2 cut(s) | 457, 1271 |
| BfoI | RGCGCY | 2 cut(s) | 415, 1064 |
| BfrI | CTTAAG | 1 cut(s) | 982 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 400 |
| BlnI | CCTAGG | 2 cut(s) | 407, 485 |
| Bme1390I | CCNGG | 5 cut(s) | 149, 237, 1186, 1206, 1207 |
| Bme18I | GGWCC | 1 cut(s) | 1171 |
| BmeT110I | CYCGRG | 1 cut(s) | 1205 |
| BmgT120I | GGNCC | 1 cut(s) | 1171 |
| BmiI | GGNNCC | 6 cut(s) | 6, 146, 183, 471, 1115, 1211 |
| BmrFI | CCNGG | 5 cut(s) | 149, 237, 1186, 1206, 1207 |
| BmrI | ACTGGG | 1 cut(s) | 7 |
| BmsI | GCATC | 3 cut(s) | 195, 214, 772 |
| BmuI | ACTGGG | 1 cut(s) | 7 |
| BpiI | GAAGAC | 3 cut(s) | 679, 882, 923 |
| BpmI | CTGGAG | 2 cut(s) | 131, 789 |
| Bpu10I | CCTNAGC | 1 cut(s) | 396 |
| Bpu14I | TTCGAA | 1 cut(s) | 98 |
| BpuEI | CTTGAG | 1 cut(s) | 894 |
| BpuMI | CCSGG | 2 cut(s) | 1206, 1207 |
| BsaHI | GRCGYC | 4 cut(s) | 155, 419, 555, 1086 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 58, 88, 787, 817 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 31, 85, 176, 506, 1101, 1191, 1219, 1220 |
| Bse118I | RCCGGY | 1 cut(s) | 109 |
| Bse1I | ACTGG | 4 cut(s) | 13, 222, 641, 901 |
| BseBI | CCWGG | 3 cut(s) | 149, 237, 1186 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 31, 85, 176, 506, 1101, 1191, 1219, 1220 |
| BseNI | ACTGG | 4 cut(s) | 13, 222, 641, 901 |
| BseRI | GAGGAG | 2 cut(s) | 68, 323 |
| BseSI | GKGCMC | 3 cut(s) | 184, 1206, 1214 |
| BseX3I | CGGCCG | 1 cut(s) | 479 |
| BseXI | GCAGC | 3 cut(s) | 390, 1167, 1246 |
| BseYI | CCCAGC | 1 cut(s) | 414 |
| Bsh1236I | CGCG | 1 cut(s) | 882 |
| Bsh1285I | CGRYCG | 1 cut(s) | 482 |
| BshFI | GGCC | 7 cut(s) | 89, 116, 394, 481, 499, 1148, 1269 |
| BshNI | GGYRCC | 2 cut(s) | 181, 1209 |
| BsiEI | CGRYCG | 1 cut(s) | 482 |
| BsiHKAI | GWGCWC | 1 cut(s) | 910 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1205 |
| BsiSI | CCGG | 3 cut(s) | 32, 110, 1206 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 31, 85, 176, 506, 1101, 1191, 1219, 1220 |
| BsmAI | GTCTC | 3 cut(s) | 80, 146, 245 |
| BsmBI | CGTCTC | 1 cut(s) | 146 |
| BsmI | GAATGC | 1 cut(s) | 303 |
| BsnI | GGCC | 7 cut(s) | 89, 116, 394, 481, 499, 1148, 1269 |
| BsoBI | CYCGRG | 1 cut(s) | 1205 |
| Bsp119I | TTCGAA | 1 cut(s) | 98 |
| Bsp1286I | GDGCHC | 5 cut(s) | 184, 910, 1095, 1206, 1214 |
| Bsp143I | GATC | 3 cut(s) | 622, 856, 946 |
| BspANI | GGCC | 7 cut(s) | 89, 116, 394, 481, 499, 1148, 1269 |
| BspFNI | CGCG | 1 cut(s) | 882 |
| BspHI | TCATGA | 2 cut(s) | 631, 1039 |
| BspLI | GGNNCC | 6 cut(s) | 6, 146, 183, 471, 1115, 1211 |
| BspPI | GGATC | 1 cut(s) | 617 |
| BspT104I | TTCGAA | 1 cut(s) | 98 |
| BspT107I | GGYRCC | 2 cut(s) | 181, 1209 |
| BspTI | CTTAAG | 1 cut(s) | 982 |
| BsrFI | RCCGGY | 1 cut(s) | 109 |
| BsrI | ACTGG | 4 cut(s) | 13, 222, 641, 901 |
| BssAI | RCCGGY | 1 cut(s) | 109 |
| BssMI | GATC | 3 cut(s) | 622, 856, 946 |
| BssNI | GRCGYC | 4 cut(s) | 155, 419, 555, 1086 |
| BssT1I | CCWWGG | 8 cut(s) | 62, 90, 333, 407, 473, 485, 588, 1095 |
| Bst2UI | CCWGG | 3 cut(s) | 149, 237, 1186 |
| Bst4CI | ACNGT | 2 cut(s) | 193, 431 |
| Bst6I | CTCTTC | 2 cut(s) | 345, 684 |
| BstACI | GRCGYC | 4 cut(s) | 155, 419, 555, 1086 |
| BstAFI | CTTAAG | 1 cut(s) | 982 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 707 |
| BstBI | TTCGAA | 1 cut(s) | 98 |
| BstC8I | GCNNGC | 7 cut(s) | 37, 111, 303, 648, 1136, 1159, 1163 |
| BstDEI | CTNAG | 1 cut(s) | 396 |
| BstDSI | CCRYGG | 1 cut(s) | 880 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 174, 1189 |
| BstFNI | CGCG | 1 cut(s) | 882 |
| BstH2I | RGCGCY | 2 cut(s) | 415, 1064 |
| BstHHI | GCGC | 3 cut(s) | 414, 1017, 1063 |
| BstKTI | GATC | 3 cut(s) | 625, 859, 949 |
| BstMAI | GTCTC | 3 cut(s) | 80, 146, 245 |
| BstMBI | GATC | 3 cut(s) | 622, 856, 946 |
| BstMCI | CGRYCG | 1 cut(s) | 482 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 16, 400, 409, 516, 707, 1154 |
| BstNI | CCWGG | 3 cut(s) | 149, 237, 1186 |
| BstSCI | CCNGG | 5 cut(s) | 147, 235, 1184, 1204, 1205 |
| BstSFI | CTRYAG | 2 cut(s) | 457, 1271 |
| BstSLI | GKGCMC | 3 cut(s) | 184, 1206, 1214 |
| BstUI | CGCG | 1 cut(s) | 882 |
| BstV1I | GCAGC | 3 cut(s) | 390, 1167, 1246 |
| BstV2I | GAAGAC | 3 cut(s) | 679, 882, 923 |
| BstZI | CGGCCG | 1 cut(s) | 479 |
| BsuRI | GGCC | 7 cut(s) | 89, 116, 394, 481, 499, 1148, 1269 |
| BtgI | CCRYGG | 1 cut(s) | 880 |
| BtgZI | GCGATG | 1 cut(s) | 465 |
| BtsI | GCAGTG | 1 cut(s) | 1024 |
| BtsIMutI | CAGTG | 1 cut(s) | 1024 |
| Cac8I | GCNNGC | 7 cut(s) | 37, 111, 303, 648, 1136, 1159, 1163 |
| CciI | TCATGA | 2 cut(s) | 631, 1039 |
| CciNI | GCGGCCGC | 1 cut(s) | 479 |
| CfoI | GCGC | 3 cut(s) | 414, 1017, 1063 |
| Cfr10I | RCCGGY | 1 cut(s) | 109 |
| Cfr13I | GGNCC | 1 cut(s) | 1171 |
| Cfr42I | CCGCGG | 1 cut(s) | 883 |
| Cfr9I | CCCGGG | 1 cut(s) | 1205 |
| CseI | GACGC | 4 cut(s) | 163, 408, 544, 1075 |
| CsiI | ACCWGGT | 1 cut(s) | 235 |
| Csp6I | GTAC | 2 cut(s) | 795, 954 |
| CviAII | CATG | 4 cut(s) | 209, 632, 902, 1040 |
| CviQI | GTAC | 2 cut(s) | 795, 954 |
| DdeI | CTNAG | 1 cut(s) | 396 |
| DpnI | GATC | 3 cut(s) | 624, 858, 948 |
| DpnII | GATC | 3 cut(s) | 622, 856, 946 |
| DraI | TTTAAA | 1 cut(s) | 385 |
| EaeI | YGGCCR | 3 cut(s) | 114, 479, 1146 |
| EagI | CGGCCG | 1 cut(s) | 479 |
| Eam1104I | CTCTTC | 2 cut(s) | 345, 684 |
| EarI | CTCTTC | 2 cut(s) | 345, 684 |
| EciI | GGCGGA | 1 cut(s) | 320 |
| EclXI | CGGCCG | 1 cut(s) | 479 |
| Eco130I | CCWWGG | 8 cut(s) | 62, 90, 333, 407, 473, 485, 588, 1095 |
| Eco24I | GRGCYC | 1 cut(s) | 1095 |
| Eco47I | GGWCC | 1 cut(s) | 1171 |
| Eco47III | AGCGCT | 1 cut(s) | 1062 |
| Eco52I | CGGCCG | 1 cut(s) | 479 |
| Eco57I | CTGAAG | 2 cut(s) | 192, 759 |
| Eco88I | CYCGRG | 1 cut(s) | 1205 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 174, 1189 |
| EcoRI | GAATTC | 1 cut(s) | 328 |
| EcoRII | CCWGG | 3 cut(s) | 147, 235, 1184 |
| EcoT14I | CCWWGG | 8 cut(s) | 62, 90, 333, 407, 473, 485, 588, 1095 |
| EcoT22I | ATGCAT | 1 cut(s) | 210 |
| EcoT38I | GRGCYC | 1 cut(s) | 1095 |
| ErhI | CCWWGG | 8 cut(s) | 62, 90, 333, 407, 473, 485, 588, 1095 |
| Esp3I | CGTCTC | 1 cut(s) | 146 |
| FaeI | CATG | 4 cut(s) | 212, 635, 905, 1043 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 342, 374 |
| FatI | CATG | 4 cut(s) | 208, 631, 901, 1039 |
| FauNDI | CATATG | 1 cut(s) | 961 |
| FbaI | TGATCA | 2 cut(s) | 856, 946 |
| FriOI | GRGCYC | 1 cut(s) | 1095 |
| FspBI | CTAG | 7 cut(s) | 27, 294, 408, 446, 486, 495, 930 |
| GlaI | GCGC | 3 cut(s) | 413, 1016, 1062 |
| GsaI | CCCAGC | 1 cut(s) | 418 |
| GsuI | CTGGAG | 2 cut(s) | 131, 789 |
| HaeII | RGCGCY | 2 cut(s) | 415, 1064 |
| HaeIII | GGCC | 7 cut(s) | 89, 116, 394, 481, 499, 1148, 1269 |
| HapII | CCGG | 3 cut(s) | 32, 110, 1206 |
| HgaI | GACGC | 4 cut(s) | 163, 408, 544, 1075 |
| HhaI | GCGC | 3 cut(s) | 414, 1017, 1063 |
| Hin1I | GRCGYC | 4 cut(s) | 155, 419, 555, 1086 |
| Hin1II | CATG | 4 cut(s) | 212, 635, 905, 1043 |
| Hin6I | GCGC | 3 cut(s) | 412, 1015, 1061 |
| HinP1I | GCGC | 3 cut(s) | 412, 1015, 1061 |
| HinfI | GANTC | 8 cut(s) | 73, 95, 355, 424, 714, 729, 992, 1034 |
| HpaII | CCGG | 3 cut(s) | 32, 110, 1206 |
| HphI | GGTGA | 4 cut(s) | 251, 419, 524, 545 |
| Hpy166II | GTNNAC | 1 cut(s) | 123 |
| Hpy188I | TCNGA | 6 cut(s) | 286, 349, 436, 739, 772, 817 |
| Hpy188III | TCNNGA | 5 cut(s) | 632, 806, 911, 1040, 1229 |
| Hpy8I | GTNNAC | 1 cut(s) | 123 |
| Hpy99I | CGWCG | 3 cut(s) | 424, 560, 1091 |
| HpyAV | CCTTC | 3 cut(s) | 114, 167, 1037 |
| HpyCH4III | ACNGT | 2 cut(s) | 193, 431 |
| HpyCH4IV | ACGT | 1 cut(s) | 720 |
| HpyCH4V | TGCA | 6 cut(s) | 208, 271, 596, 650, 701, 938 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 16, 400, 409, 516, 707, 1154 |
| HpyF3I | CTNAG | 1 cut(s) | 396 |
| HpySE526I | ACGT | 1 cut(s) | 720 |
| Hsp92I | GRCGYC | 4 cut(s) | 155, 419, 555, 1086 |
| Hsp92II | CATG | 4 cut(s) | 212, 635, 905, 1043 |
| HspAI | GCGC | 3 cut(s) | 412, 1015, 1061 |
| KroI | GCCGGC | 1 cut(s) | 109 |
| KroNI | GCCGGC | 1 cut(s) | 111 |
| Ksp22I | TGATCA | 2 cut(s) | 856, 946 |
| KspI | CCGCGG | 1 cut(s) | 883 |
| Kzo9I | GATC | 3 cut(s) | 622, 856, 946 |
| LmnI | GCTCC | 4 cut(s) | 4, 150, 310, 475 |
| Lsp1109I | GCAGC | 3 cut(s) | 390, 1167, 1246 |
| LweI | GCATC | 3 cut(s) | 195, 214, 772 |
| MabI | ACCWGGT | 1 cut(s) | 235 |
| MaeI | CTAG | 7 cut(s) | 27, 294, 408, 446, 486, 495, 930 |
| MaeII | ACGT | 1 cut(s) | 720 |
| MaeIII | GTNAC | 3 cut(s) | 239, 425, 512 |
| MalI | GATC | 3 cut(s) | 624, 858, 948 |
| MboI | GATC | 3 cut(s) | 622, 856, 946 |
| MboII | GAAGA | 8 cut(s) | 362, 671, 684, 752, 773, 887, 928, 963 |
| MfeI | CAATTG | 1 cut(s) | 975 |
| MhlI | GDGCHC | 5 cut(s) | 184, 910, 1095, 1206, 1214 |
| MluCI | AATT | 7 cut(s) | 328, 343, 388, 766, 850, 975, 1055 |
| MlyI | GAGTC | 4 cut(s) | 82, 433, 738, 986 |
| Mph1103I | ATGCAT | 1 cut(s) | 210 |
| MreI | CGCCGGCG | 1 cut(s) | 109 |
| MroNI | GCCGGC | 1 cut(s) | 109 |
| MroXI | GAANNNNTTC | 1 cut(s) | 354 |
| MseI | TTAA | 3 cut(s) | 384, 750, 983 |
| MslI | CAYNNNNRTG | 1 cut(s) | 657 |
| MspA1I | CMGCKG | 2 cut(s) | 882, 1199 |
| MspCI | CTTAAG | 1 cut(s) | 982 |
| MspI | CCGG | 3 cut(s) | 32, 110, 1206 |
| MspR9I | CCNGG | 5 cut(s) | 149, 237, 1186, 1206, 1207 |
| MunI | CAATTG | 1 cut(s) | 975 |
| Mva1269I | GAATGC | 1 cut(s) | 303 |
| MvaI | CCWGG | 3 cut(s) | 149, 237, 1186 |
| MvnI | CGCG | 1 cut(s) | 882 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 16, 400, 409, 516, 707, 1154 |
| NaeI | GCCGGC | 1 cut(s) | 111 |
| NciI | CCSGG | 2 cut(s) | 1206, 1207 |
| NdeI | CATATG | 1 cut(s) | 961 |
| NdeII | GATC | 3 cut(s) | 622, 856, 946 |
| NgoMIV | GCCGGC | 1 cut(s) | 109 |
| NlaIII | CATG | 4 cut(s) | 212, 635, 905, 1043 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 146, 183, 471, 1115, 1211 |
| NmeAIII | GCCGAG | 1 cut(s) | 525 |
| NmuCI | GTSAC | 3 cut(s) | 239, 425, 512 |
| NotI | GCGGCCGC | 1 cut(s) | 479 |
| NsiI | ATGCAT | 1 cut(s) | 210 |
| NspV | TTCGAA | 1 cut(s) | 98 |
| PagI | TCATGA | 2 cut(s) | 631, 1039 |
| PasI | CCCWGGG | 1 cut(s) | 1185 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 522 |
| PctI | GAATGC | 1 cut(s) | 303 |
| PdiI | GCCGGC | 1 cut(s) | 111 |
| PdmI | GAANNNNTTC | 1 cut(s) | 354 |
| PfeI | GAWTC | 4 cut(s) | 95, 355, 714, 1034 |
| PfoI | TCCNGGA | 1 cut(s) | 147 |
| PleI | GAGTC | 4 cut(s) | 81, 432, 737, 986 |
| PpsI | GAGTC | 4 cut(s) | 81, 432, 737, 986 |
| Psp6I | CCWGG | 3 cut(s) | 147, 235, 1184 |
| PspFI | CCCAGC | 1 cut(s) | 414 |
| PspGI | CCWGG | 3 cut(s) | 147, 235, 1184 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 146, 183, 471, 1115, 1211 |
| PspPI | GGNCC | 1 cut(s) | 1171 |
| PvuII | CAGCTG | 1 cut(s) | 1199 |
| RsaI | GTAC | 2 cut(s) | 796, 955 |
| RsaNI | GTAC | 2 cut(s) | 795, 954 |
| RseI | CAYNNNNRTG | 1 cut(s) | 657 |
| SacII | CCGCGG | 1 cut(s) | 883 |
| SaqAI | TTAA | 3 cut(s) | 384, 750, 983 |
| Sau3AI | GATC | 3 cut(s) | 622, 856, 946 |
| Sau96I | GGNCC | 1 cut(s) | 1171 |
| SchI | GAGTC | 4 cut(s) | 82, 433, 738, 986 |
| ScrFI | CCNGG | 5 cut(s) | 149, 237, 1186, 1206, 1207 |
| SduI | GDGCHC | 5 cut(s) | 184, 910, 1095, 1206, 1214 |
| SexAI | ACCWGGT | 1 cut(s) | 235 |
| SfaNI | GCATC | 3 cut(s) | 195, 214, 772 |
| SfcI | CTRYAG | 2 cut(s) | 457, 1271 |
| Sfr303I | CCGCGG | 1 cut(s) | 883 |
| SfuI | TTCGAA | 1 cut(s) | 98 |
| SgrAI | CRCCGGYG | 1 cut(s) | 109 |
| SgrBI | CCGCGG | 1 cut(s) | 883 |
| SinI | GGWCC | 1 cut(s) | 1171 |
| SmaI | CCCGGG | 1 cut(s) | 1207 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 657 |
| SmlI | CTYRAG | 2 cut(s) | 909, 982 |
| SmoI | CTYRAG | 2 cut(s) | 909, 982 |
| Sse9I | AATT | 7 cut(s) | 328, 343, 388, 766, 850, 975, 1055 |
| SspMI | CTAG | 7 cut(s) | 27, 294, 408, 446, 486, 495, 930 |
| StyD4I | CCNGG | 5 cut(s) | 147, 235, 1184, 1204, 1205 |
| StyI | CCWWGG | 8 cut(s) | 62, 90, 333, 407, 473, 485, 588, 1095 |
| TaaI | ACNGT | 2 cut(s) | 193, 431 |
| TaiI | ACGT | 1 cut(s) | 723 |
| TaqI | TCGA | 3 cut(s) | 98, 422, 1089 |
| TasI | AATT | 7 cut(s) | 328, 343, 388, 766, 850, 975, 1055 |
| TauI | GCSGC | 9 cut(s) | 10, 116, 403, 481, 484, 522, 525, 607, 1151 |
| TfiI | GAWTC | 4 cut(s) | 95, 355, 714, 1034 |
| Tru1I | TTAA | 3 cut(s) | 384, 750, 983 |
| Tru9I | TTAA | 3 cut(s) | 384, 750, 983 |
| TscAI | CASTG | 1 cut(s) | 1024 |
| TseFI | GTSAC | 3 cut(s) | 239, 425, 512 |
| TseI | GCWGC | 3 cut(s) | 403, 1180, 1259 |
| Tsp45I | GTSAC | 3 cut(s) | 239, 425, 512 |
| TspDTI | ATGAA | 7 cut(s) | 177, 381, 620, 678, 888, 1056, 1248 |
| TspGWI | ACGGA | 2 cut(s) | 32, 332 |
| TspMI | CCCGGG | 1 cut(s) | 1205 |
| TspRI | CASTG | 1 cut(s) | 1024 |
| Vha464I | CTTAAG | 1 cut(s) | 982 |
| VpaK11BI | GGWCC | 1 cut(s) | 1171 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 174, 1189 |
| XapI | RAATTY | 2 cut(s) | 328, 343 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 633, 1102 |
| XmaI | CCCGGG | 1 cut(s) | 1205 |
| XmaJI | CCTAGG | 2 cut(s) | 407, 485 |
| XmnI | GAANNNNTTC | 1 cut(s) | 354 |
| XspI | CTAG | 7 cut(s) | 27, 294, 408, 446, 486, 495, 930 |
| Zsp2I | ATGCAT | 1 cut(s) | 210 |