Rh5BG370600

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
58275996 .. 58284312
8317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG370600.1

Sequence Viewer

Length: 288 bp
ATGGACGATAGATGGTTTAAGCTATTGTGTCATCAATTACATGCAGTAGCTCATTATTTGAATCCAATGTTCCAGTATAGTGAAGGAATTGGTGATGATCCAGAGCTACTAGATGCCCTTCACTTAGTTTTTGCAAAGTTAGACCCAAACTCTGTAAGCATCGCACAATTCAGAAATGAGGGTGGACTGCTCTACGAACCACCATCCGCTGCTGCGATCATGGTTGGAGGACTGAAGATAGATTCTTTCAAGGATGAAAATGATGCGAGCATTTTCAAGGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

95

Amino Acids

10.65

Weight (kDa)

4.61

Isoelectric Point (pI)

24.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AclWI GGATC 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 254
AgsI TTSAA 3 cut(s) 61, 250, 277
AluBI AGCT 3 cut(s) 22, 50, 106
AluI AGCT 3 cut(s) 22, 50, 106
AlwI GGATC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 209, 212
AsuHPI GGTGA 1 cut(s) 104
BbvI GCAGC 2 cut(s) 196, 199
BccI CCATC 2 cut(s) 6, 211
BfaI CTAG 1 cut(s) 110
BisI GCNGC 2 cut(s) 210, 213
BlsI GCNGC 2 cut(s) 211, 214
BmsI GCATC 3 cut(s) 103, 168, 253
Bse1I ACTGG 1 cut(s) 73
BseGI GGATG 3 cut(s) 203, 259, 286
BseNI ACTGG 1 cut(s) 73
BseXI GCAGC 2 cut(s) 196, 199
Bsp143I GATC 2 cut(s) 97, 216
BspACI CCGC 1 cut(s) 207
BspPI GGATC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 73
BssMI GATC 2 cut(s) 97, 216
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 124
BstF5I GGATG 3 cut(s) 203, 259, 286
BstKTI GATC 2 cut(s) 100, 219
BstMBI GATC 2 cut(s) 97, 216
BstNSI RCATGY 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 196, 199
BtgZI GCGATG 1 cut(s) 145
BtsCI GGATG 3 cut(s) 203, 259, 286
Cac8I GCNNGC 1 cut(s) 268
CviAII CATG 2 cut(s) 41, 220
CviJI RGCY 3 cut(s) 22, 50, 106
CviKI_1 RGCY 3 cut(s) 22, 50, 106
DdeI CTNAG 1 cut(s) 124
DpnI GATC 2 cut(s) 99, 218
DpnII GATC 2 cut(s) 97, 216
Eco57I CTGAAG 1 cut(s) 254
FaeI CATG 2 cut(s) 44, 223
FaiI YATR 3 cut(s) 42, 78, 221
FatI CATG 2 cut(s) 40, 219
Fnu4HI GCNGC 2 cut(s) 210, 213
FokI GGATG 2 cut(s) 190, 266
Fsp4HI GCNGC 2 cut(s) 210, 213
FspBI CTAG 1 cut(s) 110
GluI GCNGC 2 cut(s) 210, 213
Hin1II CATG 2 cut(s) 44, 223
HinfI GANTC 2 cut(s) 61, 242
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 2 cut(s) 77, 128
HpyCH4V TGCA 2 cut(s) 44, 134
HpyF3I CTNAG 1 cut(s) 124
Hsp92II CATG 2 cut(s) 44, 223
Kzo9I GATC 2 cut(s) 97, 216
LpnPI CCDG 2 cut(s) 86, 114
Lsp1109I GCAGC 2 cut(s) 196, 199
LweI GCATC 3 cut(s) 103, 168, 253
MaeI CTAG 1 cut(s) 110
MalI GATC 2 cut(s) 99, 218
MboI GATC 2 cut(s) 97, 216
MboII GAAGA 1 cut(s) 247
MluCI AATT 3 cut(s) 35, 87, 167
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 2 cut(s) 172, 221
MseI TTAA 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 209
NdeII GATC 2 cut(s) 97, 216
NlaIII CATG 2 cut(s) 44, 223
NspI RCATGY 1 cut(s) 44
PfeI GAWTC 2 cut(s) 61, 242
PkrI GCNGC 2 cut(s) 211, 214
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 2 cut(s) 210, 213
Sau3AI GATC 2 cut(s) 97, 216
SetI ASST 3 cut(s) 24, 52, 108
SfaNI GCATC 3 cut(s) 103, 168, 253
SgeI CNNG 7 cut(s) 53, 85, 113, 122, 232, 262, 279
Sse9I AATT 3 cut(s) 35, 87, 167
SsiI CCGC 1 cut(s) 207
SspMI CTAG 1 cut(s) 110
TasI AATT 3 cut(s) 35, 87, 167
TfiI GAWTC 2 cut(s) 61, 242
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseI GCWGC 2 cut(s) 209, 212
TspDTI ATGAA 1 cut(s) 270
XceI RCATGY 1 cut(s) 44
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.