Rh6BG424900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000220
Physical Location & Seq
Forward (+)
64682747 .. 64683127
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG424900.1

Sequence Viewer

Length: 381 bp
ATGTCTCTGACTCTCTCTCTAGAGGACTATCATCAGTTCCTCTCTACAGCGAGCAACGACGACAAAACGTCACGTCTGCTTCTTTTTTCATATTGTGGCGGCGATAAAATCATTTGTATGTCTCTCTCTTCGGGTGGAGGAGGCATACTTGCTGAGGTTGGTGGGGATGGGGTTTTGGTTGACCGAATCTGGCATGGAGGAATTCCAATTGGCAGTGATGATGGATCTGCTCTCTATCCGACGATCTGTGTCGGGGAAGGCTATGGTAGAGATCGAGGGTCCGATCTAAGCTTGGTGGTGGTTGTGCTGTGCGTCTCTGATCGGGTTCGTCCCGAACTAGGGACTGATTTCTTCATTGCTTGCGACCGAGCTCCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.29

Weight (kDa)

4.42

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 99
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 338, 339
AhdI GACNNNNNGTC 1 cut(s) 67
AjiI CACGTC 1 cut(s) 74
AluBI AGCT 2 cut(s) 291, 371
AluI AGCT 2 cut(s) 291, 371
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 3 cut(s) 9, 126, 319
AlwI GGATC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 279
AvaII GGWCC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 373
BbvCI CCTCAGC 1 cut(s) 153
BccI CCATC 2 cut(s) 161, 215
BcoDI GTCTC 3 cut(s) 9, 126, 319
BfaI CTAG 2 cut(s) 20, 338
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 279
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgBI CACGTC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 280
Bpu10I CCTNAGC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 339
Bse3DI GCAATG 1 cut(s) 354
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 338, 339
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 2 cut(s) 153, 363
Bsh1285I CGRYCG 1 cut(s) 367
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 373
BslFI GGGAC 2 cut(s) 315, 355
BslI CCNNNNNNNGG 2 cut(s) 338, 339
BsmAI GTCTC 3 cut(s) 9, 126, 319
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 2 cut(s) 315, 355
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 5 cut(s) 224, 243, 271, 283, 319
BspACI CCGC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 280
BspPI GGATC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 354
BssMI GATC 5 cut(s) 224, 243, 271, 283, 319
Bst6I CTCTTC 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 52, 361
BstDEI CTNAG 3 cut(s) 153, 287, 378
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 5 cut(s) 227, 246, 274, 286, 322
BstMAI GTCTC 3 cut(s) 9, 126, 319
BstMBI GATC 5 cut(s) 224, 243, 271, 283, 319
BstMCI CGRYCG 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BtrI CACGTC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 52, 361
Cfr13I GGNCC 1 cut(s) 279
CseI GACGC 1 cut(s) 301
CviAII CATG 1 cut(s) 194
CviJI RGCY 3 cut(s) 261, 291, 371
CviKI_1 RGCY 3 cut(s) 261, 291, 371
DdeI CTNAG 3 cut(s) 153, 287, 378
DpnI GATC 5 cut(s) 226, 245, 273, 285, 321
DpnII GATC 5 cut(s) 224, 243, 271, 283, 319
DriI GACNNNNNGTC 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 133
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 371
Eco24I GRGCYC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 1 cut(s) 197
FaiI YATR 5 cut(s) 91, 119, 146, 195, 264
FaqI GGGAC 2 cut(s) 315, 355
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 1 cut(s) 100
FspBI CTAG 2 cut(s) 20, 338
GluI GCNGC 1 cut(s) 100
HgaI GACGC 1 cut(s) 301
Hin1II CATG 1 cut(s) 197
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 2 cut(s) 10, 186
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 4 cut(s) 9, 240, 283, 319
Hpy188III TCNNGA 2 cut(s) 20, 332
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 62, 244
HpyAV CCTTC 1 cut(s) 251
HpyCH4IV ACGT 2 cut(s) 68, 73
HpyF3I CTNAG 3 cut(s) 153, 287, 378
HpySE526I ACGT 2 cut(s) 68, 73
Hsp92II CATG 1 cut(s) 197
Kzo9I GATC 5 cut(s) 224, 243, 271, 283, 319
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 1 cut(s) 175
MaeI CTAG 2 cut(s) 20, 338
MaeII ACGT 2 cut(s) 68, 73
MaeIII GTNAC 1 cut(s) 69
MalI GATC 5 cut(s) 226, 245, 273, 285, 321
MboI GATC 5 cut(s) 224, 243, 271, 283, 319
MboII GAAGA 2 cut(s) 120, 343
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 2 cut(s) 201, 207
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 7 cut(s) 16, 50, 131, 134, 148, 191, 269
MslI CAYNNNNRTG 1 cut(s) 116
MunI CAATTG 1 cut(s) 207
NdeII GATC 5 cut(s) 224, 243, 271, 283, 319
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp124BI GAGCTC 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 279
PsuI RGATCY 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 116
SacI GAGCTC 1 cut(s) 373
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 5 cut(s) 224, 243, 271, 283, 319
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 373
SetI ASST 5 cut(s) 71, 76, 159, 293, 373
SfcI CTRYAG 1 cut(s) 45
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 2 cut(s) 201, 207
SsiI CCGC 1 cut(s) 99
SspMI CTAG 2 cut(s) 20, 338
SstI GAGCTC 1 cut(s) 373
TaiI ACGT 2 cut(s) 71, 76
TaqI TCGA 1 cut(s) 274
TaqII GACCGA 2 cut(s) 198, 381
TasI AATT 2 cut(s) 201, 207
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 1 cut(s) 186
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 69
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 2 cut(s) 78, 343
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 201
XbaI TCTAGA 1 cut(s) 19
XspI CTAG 2 cut(s) 20, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.