Rh6DG105300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000220
Physical Location & Seq
Forward (+)
13408199 .. 13411553
3355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG105300.1

Sequence Viewer

Length: 267 bp
ATGGCTTCGAGAGTCGTTGATCAACAACAAGCCAGAGAATTTGTTGGTCCTCTGGATGTAGATCCCTGTGATTATAAAGCTGCTATGAGAGCATCAAGACAATCAAAATGGGAAAGGGAGCAAGGTATAAGTAGAGGTGTTTCAGGGCCTGGTGGGACAAGTCGAAGCCAACCAAAATTTGAGAGATCAAAAAGTGTACGACAAGAGCATGGAGACCTACCTCAAGATTCATTCCCACAGTCACTCTGTAAATCCAATACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.77

Weight (kDa)

9.18

Isoelectric Point (pI)

62.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 2 cut(s) 38, 176
AfaI GTAC 1 cut(s) 198
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 38, 176
AspS9I GGNCC 2 cut(s) 47, 146
AvaII GGWCC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 150
BclI TGATCA 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 207
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 47, 146
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 61
BseJI GATNNNNATC 1 cut(s) 60
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 148
BslFI GGGAC 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 148
Bso31I GGTCTC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 19, 61, 185
BspANI GGCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 207
BssMI GATC 3 cut(s) 19, 61, 185
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 240
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 3 cut(s) 22, 64, 188
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 3 cut(s) 19, 61, 185
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 1 cut(s) 148
BtsCI GGATG 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 47, 146
Csp6I GTAC 1 cut(s) 197
CviAII CATG 1 cut(s) 209
CviJI RGCY 5 cut(s) 5, 32, 80, 148, 168
CviKI_1 RGCY 5 cut(s) 5, 32, 80, 148, 168
CviQI GTAC 1 cut(s) 197
DpnI GATC 3 cut(s) 21, 63, 187
DpnII GATC 3 cut(s) 19, 61, 185
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 1 cut(s) 212
FaiI YATR 5 cut(s) 75, 86, 128, 210, 265
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 208
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 148
Hin1II CATG 1 cut(s) 212
HinfI GANTC 2 cut(s) 12, 227
Hpy166II GTNNAC 1 cut(s) 197
Hpy188III TCNNGA 4 cut(s) 9, 53, 96, 224
Hpy8I GTNNAC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
Hsp92II CATG 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 3 cut(s) 19, 61, 185
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 6 cut(s) 38, 46, 79, 129, 135, 162
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 240
MalI GATC 3 cut(s) 21, 63, 187
MboI GATC 3 cut(s) 19, 61, 185
MflI RGATCY 1 cut(s) 61
MluCI AATT 2 cut(s) 38, 176
MlyI GAGTC 1 cut(s) 21
MnlI CCTC 3 cut(s) 60, 128, 231
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 3 cut(s) 19, 61, 185
NlaIII CATG 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PsiI TTATAA 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 2 cut(s) 47, 146
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 3 cut(s) 19, 61, 185
Sau96I GGNCC 2 cut(s) 47, 146
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 150
SetI ASST 5 cut(s) 82, 127, 139, 219, 223
SfaNI GCATC 1 cut(s) 101
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 2 cut(s) 38, 176
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 8, 163
TasI AATT 2 cut(s) 38, 176
TfiI GAWTC 1 cut(s) 227
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 2 cut(s) 38, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.