pycom15g25050

source UniProtKB

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
19399052 .. 19399741
690 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g25050.1

Sequence Viewer

Length: 690 bp
ATGGAGTATAAAGACATTGGCGAGTATGTTAACAAGTTAAGGTCAAAGTGGGAAACTAATGGTTGCACAATCATGTGTGACGGATGGACTGGCCCGACCAGATTGTCTATCATAAACTTCATGGTATACTCCAAGGAAAAGACAATTTTTTTGAAGTCCGTTGATGCTTCAGACCATATAAAGAACTACAAGTATATTTACAAATTATTGAGGGATGTAATCATGGAAGTAGGAGAGCATTATGTTGTCCAAGTCGTGACCGACAACGGTTCTGCATTTGTCAAAGCTGGAAAAAAGTTAATGAAGCATCATAATGTGTTTTGGACATCACGTGCAGCACATTGTATTGATCTCATGTTTGAGGCAATGAGGAAGAAAGAGAATATTGCTAATGTCGTAAAAAGAGCTAGAACAATCACAAATTATATTTACAATCACGGTTGGTTATTGGCAAAGATGGTTGAATTTTGCAAAGGAGAAATTATTCGTCCAGCTATCATTCGATTCGCCACCAACTATATTGGATTAGATAGCCTACTTAAGAAGAAAGCGGGGTTGAAGCAACTATTCATTAGTGACGATTGGGCCAACCACAATTTCAGCTGCTCAAATGCAGGTCATATAGTGGAATGTATAGTGCTTGATCGATGCTTTTTGGACTCAATCAGAACATGTGTGCCAACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

230

Amino Acids

26.42

Weight (kDa)

9.18

Isoelectric Point (pI)

24.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 2 - 139 3.5e-48 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 605
AccI GTMKAC 1 cut(s) 126
AciI CCGC 1 cut(s) 551
AcsI RAATTY 1 cut(s) 464
AcuI CTGAAG 1 cut(s) 153
AcvI CACGTG 1 cut(s) 332
AflII CTTAAG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 671
AgsI TTSAA 3 cut(s) 154, 464, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 4 cut(s) 287, 407, 494, 603
AluI AGCT 4 cut(s) 287, 407, 494, 603
AoxI GGCC 2 cut(s) 91, 585
ApeKI GCWGC 2 cut(s) 335, 603
ApoI RAATTY 1 cut(s) 464
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
Asp700I GAANNNNTTC 1 cut(s) 483
AspS9I GGNCC 2 cut(s) 92, 585
BbrPI CACGTG 1 cut(s) 332
BbvI GCAGC 2 cut(s) 347, 590
BccI CCATC 2 cut(s) 78, 451
BfaI CTAG 1 cut(s) 408
BfrI CTTAAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 605
BisI GCNGC 2 cut(s) 336, 604
BlsI GCNGC 2 cut(s) 337, 605
BmgT120I GGNCC 2 cut(s) 92, 585
BmsI GCATC 3 cut(s) 154, 316, 638
Bsa29I ATCGAT 1 cut(s) 646
BsaAI YACGTR 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 372
BseCI ATCGAT 1 cut(s) 646
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 89, 220
BseMI GCAATG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 347, 590
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 2 cut(s) 93, 587
BshVI ATCGAT 1 cut(s) 646
BsnI GGCC 2 cut(s) 93, 587
Bsp143I GATC 2 cut(s) 349, 643
BspACI CCGC 1 cut(s) 551
BspANI GGCC 2 cut(s) 93, 587
BspDI ATCGAT 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 605
BspTI CTTAAG 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 349, 643
BssNAI GTATAC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 132
Bst1107I GTATAC 1 cut(s) 127
Bst4CI ACNGT 3 cut(s) 269, 440, 685
BstAFI CTTAAG 1 cut(s) 539
BstBAI YACGTR 1 cut(s) 332
BstF5I GGATG 2 cut(s) 89, 220
BstKTI GATC 2 cut(s) 352, 646
BstMBI GATC 2 cut(s) 349, 643
BstNSI RCATGY 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 347, 590
BstZ17I GTATAC 1 cut(s) 127
Bsu15I ATCGAT 1 cut(s) 646
BsuRI GGCC 2 cut(s) 93, 587
BsuTUI ATCGAT 1 cut(s) 646
BtsCI GGATG 2 cut(s) 89, 220
BveI ACCTGC 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 92, 585
ClaI ATCGAT 1 cut(s) 646
CviAII CATG 5 cut(s) 73, 121, 223, 355, 672
CviJI RGCY 7 cut(s) 93, 287, 407, 494, 534, 587, 603
CviKI_1 RGCY 7 cut(s) 93, 287, 407, 494, 534, 587, 603
DpnI GATC 2 cut(s) 351, 645
DpnII GATC 2 cut(s) 349, 643
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 153
Eco72I CACGTG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 5 cut(s) 76, 124, 226, 358, 675
FatI CATG 5 cut(s) 72, 120, 222, 354, 671
FauI CCCGC 1 cut(s) 544
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 336, 604
FokI GGATG 2 cut(s) 96, 227
Fsp4HI GCNGC 2 cut(s) 336, 604
FspBI CTAG 1 cut(s) 408
GluI GCNGC 2 cut(s) 336, 604
HaeIII GGCC 2 cut(s) 93, 587
Hin1II CATG 5 cut(s) 76, 124, 226, 358, 675
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 2 cut(s) 504, 659
HpaI GTTAAC 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 31, 127
Hpy188I TCNGA 2 cut(s) 172, 668
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 2 cut(s) 31, 127
HpyCH4III ACNGT 3 cut(s) 269, 440, 685
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 5 cut(s) 66, 275, 335, 471, 614
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 5 cut(s) 76, 124, 226, 358, 675
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 349, 643
LpnPI CCDG 5 cut(s) 75, 112, 273, 504, 600
Lsp1109I GCAGC 2 cut(s) 347, 590
LweI GCATC 3 cut(s) 154, 316, 638
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 3 cut(s) 77, 256, 575
MalI GATC 2 cut(s) 351, 645
MboI GATC 2 cut(s) 349, 643
MboII GAAGA 2 cut(s) 385, 556
MluCI AATT 6 cut(s) 144, 203, 421, 464, 480, 595
MlyI GAGTC 1 cut(s) 653
MnlI CCTC 3 cut(s) 204, 355, 363
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 4 cut(s) 30, 38, 299, 540
MslI CAYNNNNRTG 2 cut(s) 71, 312
MspA1I CMGCKG 1 cut(s) 603
MspCI CTTAAG 1 cut(s) 539
NdeII GATC 2 cut(s) 349, 643
NlaIII CATG 5 cut(s) 76, 124, 226, 358, 675
NmuCI GTSAC 3 cut(s) 77, 256, 575
NspI RCATGY 1 cut(s) 675
PciI ACATGT 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 1 cut(s) 504
PkrI GCNGC 2 cut(s) 337, 605
PleI GAGTC 1 cut(s) 653
PmaCI CACGTG 1 cut(s) 332
PmlI CACGTG 1 cut(s) 332
PpsI GAGTC 1 cut(s) 653
Ppu21I YACGTR 1 cut(s) 332
PscI ACATGT 1 cut(s) 671
PspCI CACGTG 1 cut(s) 332
PspPI GGNCC 2 cut(s) 92, 585
PvuII CAGCTG 1 cut(s) 603
RseI CAYNNNNRTG 2 cut(s) 71, 312
SaqAI TTAA 4 cut(s) 30, 38, 299, 540
SatI GCNGC 2 cut(s) 336, 604
Sau3AI GATC 2 cut(s) 349, 643
Sau96I GGNCC 2 cut(s) 92, 585
SchI GAGTC 1 cut(s) 653
SetI ASST 7 cut(s) 44, 289, 334, 409, 496, 605, 619
SfaNI GCATC 3 cut(s) 154, 316, 638
SmiMI CAYNNNNRTG 2 cut(s) 71, 312
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 6 cut(s) 144, 203, 421, 464, 480, 595
SsiI CCGC 1 cut(s) 551
SspI AATATT 1 cut(s) 385
SspMI CTAG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 3 cut(s) 269, 440, 685
TaiI ACGT 1 cut(s) 334
TaqI TCGA 2 cut(s) 502, 646
TaqII GACCGA 1 cut(s) 275
TasI AATT 6 cut(s) 144, 203, 421, 464, 480, 595
TfiI GAWTC 1 cut(s) 504
Tru1I TTAA 4 cut(s) 30, 38, 299, 540
Tru9I TTAA 4 cut(s) 30, 38, 299, 540
TseFI GTSAC 3 cut(s) 77, 256, 575
TseI GCWGC 2 cut(s) 335, 603
Tsp45I GTSAC 3 cut(s) 77, 256, 575
TspDTI ATGAA 3 cut(s) 109, 317, 559
TspGWI ACGGA 2 cut(s) 96, 148
Vha464I CTTAAG 1 cut(s) 539
XapI RAATTY 1 cut(s) 464
XceI RCATGY 1 cut(s) 675
XmiI GTMKAC 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.