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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 33, 835, 940 |
| AciI | CCGC | 9 cut(s) | 15, 33, 36, 59, 83, 156, 833, 923, 940 |
| AclWI | GGATC | 1 cut(s) | 409 |
| AcoI | YGGCCR | 1 cut(s) | 107 |
| AcsI | RAATTY | 1 cut(s) | 526 |
| AcuI | CTGAAG | 1 cut(s) | 557 |
| AdeI | CACNNNGTG | 1 cut(s) | 416 |
| AfaI | GTAC | 1 cut(s) | 927 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 32, 167, 867, 909 |
| AgsI | TTSAA | 2 cut(s) | 611, 803 |
| AjiI | CACGTC | 1 cut(s) | 245 |
| AjnI | CCWGG | 2 cut(s) | 193, 698 |
| AluBI | AGCT | 5 cut(s) | 104, 224, 408, 818, 931 |
| AluI | AGCT | 5 cut(s) | 104, 224, 408, 818, 931 |
| Alw26I | GTCTC | 3 cut(s) | 264, 563, 618 |
| AlwI | GGATC | 1 cut(s) | 409 |
| Ama87I | CYCGRG | 2 cut(s) | 134, 808 |
| AoxI | GGCC | 6 cut(s) | 97, 107, 131, 158, 765, 848 |
| ApeKI | GCWGC | 1 cut(s) | 141 |
| ApoI | RAATTY | 1 cut(s) | 526 |
| AspA2I | CCTAGG | 1 cut(s) | 161 |
| AspLEI | GCGC | 1 cut(s) | 33 |
| AspS9I | GGNCC | 8 cut(s) | 61, 97, 132, 158, 742, 765, 792, 849 |
| AsuC2I | CCSGG | 3 cut(s) | 809, 810, 852 |
| AsuHPI | GGTGA | 1 cut(s) | 892 |
| AvaI | CYCGRG | 2 cut(s) | 134, 808 |
| AvaII | GGWCC | 3 cut(s) | 61, 742, 792 |
| AvrII | CCTAGG | 1 cut(s) | 161 |
| BanII | GRGCYC | 1 cut(s) | 720 |
| BauI | CACGAG | 1 cut(s) | 907 |
| BbsI | GAAGAC | 1 cut(s) | 247 |
| BbvI | GCAGC | 1 cut(s) | 128 |
| BccI | CCATC | 3 cut(s) | 35, 224, 911 |
| BceAI | ACGGC | 2 cut(s) | 44, 72 |
| BciT130I | CCWGG | 2 cut(s) | 195, 700 |
| BclI | TGATCA | 2 cut(s) | 439, 885 |
| BcnI | CCSGG | 3 cut(s) | 809, 810, 852 |
| BcoDI | GTCTC | 3 cut(s) | 264, 563, 618 |
| BfaI | CTAG | 3 cut(s) | 162, 219, 225 |
| BisI | GCNGC | 2 cut(s) | 34, 142 |
| BlnI | CCTAGG | 1 cut(s) | 161 |
| BlsI | GCNGC | 2 cut(s) | 35, 143 |
| Bme1390I | CCNGG | 5 cut(s) | 195, 700, 809, 810, 852 |
| Bme18I | GGWCC | 3 cut(s) | 61, 742, 792 |
| BmeT110I | CYCGRG | 2 cut(s) | 134, 808 |
| BmgBI | CACGTC | 1 cut(s) | 245 |
| BmgT120I | GGNCC | 8 cut(s) | 61, 97, 132, 158, 742, 765, 792, 849 |
| BmiI | GGNNCC | 2 cut(s) | 743, 766 |
| BmrFI | CCNGG | 5 cut(s) | 195, 700, 809, 810, 852 |
| BmsI | GCATC | 2 cut(s) | 496, 692 |
| BoxI | GACNNNNGTC | 1 cut(s) | 59 |
| BpiI | GAAGAC | 1 cut(s) | 247 |
| BpuEI | CTTGAG | 1 cut(s) | 148 |
| BpuMI | CCSGG | 3 cut(s) | 809, 810, 852 |
| BsaJI | CCNNGG | 5 cut(s) | 26, 161, 698, 808, 809 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 32, 167, 867, 909 |
| Bse118I | RCCGGY | 1 cut(s) | 109 |
| BseBI | CCWGG | 2 cut(s) | 195, 700 |
| BseDI | CCNNGG | 5 cut(s) | 26, 161, 698, 808, 809 |
| BseGI | GGATG | 3 cut(s) | 46, 235, 922 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 32, 167, 867, 909 |
| BseMII | CTCAG | 1 cut(s) | 393 |
| BseRI | GAGGAG | 1 cut(s) | 627 |
| BseXI | GCAGC | 1 cut(s) | 128 |
| BseYI | CCCAGC | 1 cut(s) | 166 |
| BsgI | GTGCAG | 1 cut(s) | 661 |
| Bsh1236I | CGCG | 3 cut(s) | 33, 835, 940 |
| BshFI | GGCC | 6 cut(s) | 99, 109, 133, 160, 767, 850 |
| BsiHKCI | CYCGRG | 2 cut(s) | 134, 808 |
| BsiSI | CCGG | 4 cut(s) | 64, 110, 809, 852 |
| BslFI | GGGAC | 1 cut(s) | 436 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 32, 167, 867, 909 |
| BsmAI | GTCTC | 3 cut(s) | 264, 563, 618 |
| BsmBI | CGTCTC | 1 cut(s) | 618 |
| BsmFI | GGGAC | 1 cut(s) | 436 |
| BsnI | GGCC | 6 cut(s) | 99, 109, 133, 160, 767, 850 |
| BsoBI | CYCGRG | 2 cut(s) | 134, 808 |
| Bsp1286I | GDGCHC | 1 cut(s) | 720 |
| Bsp143I | GATC | 5 cut(s) | 120, 401, 439, 796, 885 |
| BspACI | CCGC | 9 cut(s) | 15, 33, 36, 59, 83, 156, 833, 923, 940 |
| BspANI | GGCC | 6 cut(s) | 99, 109, 133, 160, 767, 850 |
| BspCNI | CTCAG | 1 cut(s) | 392 |
| BspFNI | CGCG | 3 cut(s) | 33, 835, 940 |
| BspHI | TCATGA | 1 cut(s) | 361 |
| BspLI | GGNNCC | 2 cut(s) | 743, 766 |
| BspPI | GGATC | 1 cut(s) | 409 |
| BsrFI | RCCGGY | 1 cut(s) | 109 |
| BssAI | RCCGGY | 1 cut(s) | 109 |
| BssECI | CCNNGG | 5 cut(s) | 26, 161, 698, 808, 809 |
| BssMI | GATC | 5 cut(s) | 120, 401, 439, 796, 885 |
| BssSI | CACGAG | 1 cut(s) | 907 |
| BssT1I | CCWWGG | 1 cut(s) | 161 |
| Bst2BI | CACGAG | 1 cut(s) | 907 |
| Bst2UI | CCWGG | 2 cut(s) | 195, 700 |
| Bst4CI | ACNGT | 2 cut(s) | 118, 486 |
| Bst6I | CTCTTC | 3 cut(s) | 576, 649, 654 |
| BstC8I | GCNNGC | 3 cut(s) | 111, 158, 938 |
| BstDEI | CTNAG | 1 cut(s) | 379 |
| BstDSI | CCRYGG | 1 cut(s) | 26 |
| BstF5I | GGATG | 3 cut(s) | 46, 235, 922 |
| BstFNI | CGCG | 3 cut(s) | 33, 835, 940 |
| BstHHI | GCGC | 1 cut(s) | 33 |
| BstKTI | GATC | 5 cut(s) | 123, 404, 442, 799, 888 |
| BstMAI | GTCTC | 3 cut(s) | 264, 563, 618 |
| BstMBI | GATC | 5 cut(s) | 120, 401, 439, 796, 885 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 73, 110, 147, 429, 937 |
| BstNI | CCWGG | 2 cut(s) | 195, 700 |
| BstNSI | RCATGY | 1 cut(s) | 709 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 59 |
| BstSCI | CCNGG | 5 cut(s) | 193, 698, 807, 808, 850 |
| BstUI | CGCG | 3 cut(s) | 33, 835, 940 |
| BstV1I | GCAGC | 1 cut(s) | 128 |
| BstV2I | GAAGAC | 1 cut(s) | 247 |
| BsuRI | GGCC | 6 cut(s) | 99, 109, 133, 160, 767, 850 |
| BtgI | CCRYGG | 1 cut(s) | 26 |
| BtrI | CACGTC | 1 cut(s) | 245 |
| BtsCI | GGATG | 3 cut(s) | 46, 235, 922 |
| BtsI | GCAGTG | 2 cut(s) | 629, 678 |
| BtsIMutI | CAGTG | 2 cut(s) | 629, 678 |
| Cac8I | GCNNGC | 3 cut(s) | 111, 158, 938 |
| CciI | TCATGA | 1 cut(s) | 361 |
| CfoI | GCGC | 1 cut(s) | 33 |
| Cfr10I | RCCGGY | 1 cut(s) | 109 |
| Cfr13I | GGNCC | 8 cut(s) | 61, 97, 132, 158, 742, 765, 792, 849 |
| Cfr9I | CCCGGG | 1 cut(s) | 808 |
| CpoI | CGGWCCG | 1 cut(s) | 61 |
| CseI | GACGC | 1 cut(s) | 635 |
| Csp6I | GTAC | 1 cut(s) | 926 |
| CspI | CGGWCCG | 1 cut(s) | 61 |
| CviAII | CATG | 2 cut(s) | 362, 706 |
| CviQI | GTAC | 1 cut(s) | 926 |
| DdeI | CTNAG | 1 cut(s) | 379 |
| DpnI | GATC | 5 cut(s) | 122, 403, 441, 798, 887 |
| DpnII | GATC | 5 cut(s) | 120, 401, 439, 796, 885 |
| DraI | TTTAAA | 1 cut(s) | 274 |
| DraIII | CACNNNGTG | 1 cut(s) | 416 |
| EaeI | YGGCCR | 1 cut(s) | 107 |
| Eam1104I | CTCTTC | 3 cut(s) | 576, 649, 654 |
| EarI | CTCTTC | 3 cut(s) | 576, 649, 654 |
| Eco130I | CCWWGG | 1 cut(s) | 161 |
| Eco24I | GRGCYC | 1 cut(s) | 720 |
| Eco32I | GATATC | 1 cut(s) | 514 |
| Eco47I | GGWCC | 3 cut(s) | 61, 742, 792 |
| Eco57I | CTGAAG | 1 cut(s) | 557 |
| Eco88I | CYCGRG | 2 cut(s) | 134, 808 |
| EcoRII | CCWGG | 2 cut(s) | 193, 698 |
| EcoRV | GATATC | 1 cut(s) | 514 |
| EcoT14I | CCWWGG | 1 cut(s) | 161 |
| EcoT38I | GRGCYC | 1 cut(s) | 720 |
| ErhI | CCWWGG | 1 cut(s) | 161 |
| Esp3I | CGTCTC | 1 cut(s) | 618 |
| FaeI | CATG | 2 cut(s) | 365, 709 |
| FaqI | GGGAC | 1 cut(s) | 436 |
| FatI | CATG | 2 cut(s) | 361, 705 |
| FauI | CCCGC | 3 cut(s) | 29, 149, 840 |
| FauNDI | CATATG | 1 cut(s) | 427 |
| FbaI | TGATCA | 2 cut(s) | 439, 885 |
| Fnu4HI | GCNGC | 2 cut(s) | 34, 142 |
| FokI | GGATG | 3 cut(s) | 53, 242, 929 |
| FriOI | GRGCYC | 1 cut(s) | 720 |
| Fsp4HI | GCNGC | 2 cut(s) | 34, 142 |
| FspBI | CTAG | 3 cut(s) | 162, 219, 225 |
| GlaI | GCGC | 1 cut(s) | 32 |
| GluI | GCNGC | 2 cut(s) | 34, 142 |
| GsaI | CCCAGC | 1 cut(s) | 170 |
| HaeIII | GGCC | 6 cut(s) | 99, 109, 133, 160, 767, 850 |
| HapII | CCGG | 4 cut(s) | 64, 110, 809, 852 |
| HgaI | GACGC | 1 cut(s) | 635 |
| HhaI | GCGC | 1 cut(s) | 33 |
| Hin1II | CATG | 2 cut(s) | 365, 709 |
| Hin6I | GCGC | 1 cut(s) | 31 |
| HinP1I | GCGC | 1 cut(s) | 31 |
| HincII | GTYRAC | 1 cut(s) | 54 |
| HindII | GTYRAC | 1 cut(s) | 54 |
| HindIII | AAGCTT | 1 cut(s) | 102 |
| HinfI | GANTC | 4 cut(s) | 289, 296, 607, 872 |
| HpaII | CCGG | 4 cut(s) | 64, 110, 809, 852 |
| HphI | GGTGA | 1 cut(s) | 892 |
| Hpy166II | GTNNAC | 1 cut(s) | 54 |
| Hpy188I | TCNGA | 3 cut(s) | 382, 518, 916 |
| Hpy188III | TCNNGA | 6 cut(s) | 206, 219, 293, 362, 687, 803 |
| Hpy8I | GTNNAC | 1 cut(s) | 54 |
| Hpy99I | CGWCG | 1 cut(s) | 451 |
| HpyAV | CCTTC | 2 cut(s) | 63, 783 |
| HpyCH4III | ACNGT | 2 cut(s) | 118, 486 |
| HpyCH4IV | ACGT | 1 cut(s) | 244 |
| HpyCH4V | TGCA | 7 cut(s) | 200, 460, 509, 584, 678, 683, 705 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 73, 110, 147, 429, 937 |
| HpyF3I | CTNAG | 1 cut(s) | 379 |
| HpySE526I | ACGT | 1 cut(s) | 244 |
| Hsp92II | CATG | 2 cut(s) | 365, 709 |
| HspAI | GCGC | 1 cut(s) | 31 |
| KroI | GCCGGC | 1 cut(s) | 109 |
| KroNI | GCCGGC | 1 cut(s) | 111 |
| Ksp22I | TGATCA | 2 cut(s) | 439, 885 |
| Kzo9I | GATC | 5 cut(s) | 120, 401, 439, 796, 885 |
| Lsp1109I | GCAGC | 1 cut(s) | 128 |
| LweI | GCATC | 2 cut(s) | 496, 692 |
| MaeI | CTAG | 3 cut(s) | 162, 219, 225 |
| MaeII | ACGT | 1 cut(s) | 244 |
| MalI | GATC | 5 cut(s) | 122, 403, 441, 798, 887 |
| MboI | GATC | 5 cut(s) | 120, 401, 439, 796, 885 |
| MboII | GAAGA | 8 cut(s) | 252, 276, 537, 563, 636, 641, 791, 889 |
| MhlI | GDGCHC | 1 cut(s) | 720 |
| MluCI | AATT | 5 cut(s) | 214, 396, 501, 526, 770 |
| MlyI | GAGTC | 2 cut(s) | 290, 298 |
| MmeI | TCCRAC | 2 cut(s) | 803, 894 |
| MnlI | CCTC | 9 cut(s) | 42, 123, 388, 545, 645, 648, 652, 840, 903 |
| MroNI | GCCGGC | 1 cut(s) | 109 |
| MseI | TTAA | 2 cut(s) | 273, 524 |
| MspI | CCGG | 4 cut(s) | 64, 110, 809, 852 |
| MspR9I | CCNGG | 5 cut(s) | 195, 700, 809, 810, 852 |
| MvaI | CCWGG | 2 cut(s) | 195, 700 |
| MvnI | CGCG | 3 cut(s) | 33, 835, 940 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 73, 110, 147, 429, 937 |
| NaeI | GCCGGC | 1 cut(s) | 111 |
| NciI | CCSGG | 3 cut(s) | 809, 810, 852 |
| NdeI | CATATG | 1 cut(s) | 427 |
| NdeII | GATC | 5 cut(s) | 120, 401, 439, 796, 885 |
| NgoMIV | GCCGGC | 1 cut(s) | 109 |
| NlaIII | CATG | 2 cut(s) | 365, 709 |
| NlaIV | GGNNCC | 2 cut(s) | 743, 766 |
| NspI | RCATGY | 1 cut(s) | 709 |
| PagI | TCATGA | 1 cut(s) | 361 |
| PdiI | GCCGGC | 1 cut(s) | 111 |
| PfeI | GAWTC | 2 cut(s) | 607, 872 |
| PkrI | GCNGC | 2 cut(s) | 35, 143 |
| PleI | GAGTC | 2 cut(s) | 290, 297 |
| PpsI | GAGTC | 2 cut(s) | 290, 297 |
| PshAI | GACNNNNGTC | 1 cut(s) | 59 |
| Psp6I | CCWGG | 2 cut(s) | 193, 698 |
| PspFI | CCCAGC | 1 cut(s) | 166 |
| PspGI | CCWGG | 2 cut(s) | 193, 698 |
| PspN4I | GGNNCC | 2 cut(s) | 743, 766 |
| PspPI | GGNCC | 8 cut(s) | 61, 97, 132, 158, 742, 765, 792, 849 |
| RsaI | GTAC | 1 cut(s) | 927 |
| RsaNI | GTAC | 1 cut(s) | 926 |
| Rsr2I | CGGWCCG | 1 cut(s) | 61 |
| RsrII | CGGWCCG | 1 cut(s) | 61 |
| SaqAI | TTAA | 2 cut(s) | 273, 524 |
| SatI | GCNGC | 2 cut(s) | 34, 142 |
| Sau3AI | GATC | 5 cut(s) | 120, 401, 439, 796, 885 |
| Sau96I | GGNCC | 8 cut(s) | 61, 97, 132, 158, 742, 765, 792, 849 |
| SchI | GAGTC | 2 cut(s) | 290, 298 |
| ScrFI | CCNGG | 5 cut(s) | 195, 700, 809, 810, 852 |
| SduI | GDGCHC | 1 cut(s) | 720 |
| SfaNI | GCATC | 2 cut(s) | 496, 692 |
| SinI | GGWCC | 3 cut(s) | 61, 742, 792 |
| SmaI | CCCGGG | 1 cut(s) | 810 |
| SmlI | CTYRAG | 1 cut(s) | 127 |
| SmoI | CTYRAG | 1 cut(s) | 127 |
| Sse9I | AATT | 5 cut(s) | 214, 396, 501, 526, 770 |
| SsiI | CCGC | 9 cut(s) | 15, 33, 36, 59, 83, 156, 833, 923, 940 |
| SspI | AATATT | 1 cut(s) | 730 |
| SspMI | CTAG | 3 cut(s) | 162, 219, 225 |
| StyD4I | CCNGG | 5 cut(s) | 193, 698, 807, 808, 850 |
| StyI | CCWWGG | 1 cut(s) | 161 |
| TaaI | ACNGT | 2 cut(s) | 118, 486 |
| TaiI | ACGT | 1 cut(s) | 247 |
| TaqI | TCGA | 1 cut(s) | 287 |
| TaqII | GACCGA | 1 cut(s) | 809 |
| TasI | AATT | 5 cut(s) | 214, 396, 501, 526, 770 |
| TauI | GCSGC | 1 cut(s) | 36 |
| TfiI | GAWTC | 2 cut(s) | 607, 872 |
| Tru1I | TTAA | 2 cut(s) | 273, 524 |
| Tru9I | TTAA | 2 cut(s) | 273, 524 |
| TscAI | CASTG | 2 cut(s) | 636, 685 |
| TseI | GCWGC | 1 cut(s) | 141 |
| TspDTI | ATGAA | 6 cut(s) | 317, 378, 408, 459, 492, 684 |
| TspMI | CCCGGG | 1 cut(s) | 808 |
| TspRI | CASTG | 2 cut(s) | 636, 685 |
| VpaK11BI | GGWCC | 3 cut(s) | 61, 742, 792 |
| XapI | RAATTY | 1 cut(s) | 526 |
| XbaI | TCTAGA | 1 cut(s) | 218 |
| XceI | RCATGY | 1 cut(s) | 709 |
| XmaI | CCCGGG | 1 cut(s) | 808 |
| XmaJI | CCTAGG | 1 cut(s) | 161 |
| XspI | CTAG | 3 cut(s) | 162, 219, 225 |