Rmu_sc0004283.1_g000013

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004283.1
OG0000220
Physical Location & Seq
Forward (+)
81815 .. 84942
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004283.1_g000013.1.cds

Sequence Viewer

Length: 795 bp
atgaagctgcggctgcgagataaacaggcaaagaataatgtggtcaatgaaaacaactatatagatctacttcatgttgcaagcgagccgcttgataatggcattgatccacttcatgattggattatgcctgcacacctcgatgatgaagctggaagacctcttccacaagttgtagaaactgcaactaatgctggaatcaacgtagagatagtcttatctgaagaagttgttaaaaacccagaagataattcagatagtgatgatgcgtggggtggtacagcaactccagatagttctgatgatggtgggaagggtggaagcataacaggtagtggagatgaaagatatgaatatgggcaatcttctgtggatggaggattccaatttacctgtgaagttaattttgatcatgccacccaagatgaagaccatggagtgagaacagctggtcatggtgctcaagagaagacccgatatgggaggaggactagaagtgcaactgatgatcaaagtaccccatctgatgtttcttcaattgccttaagttttgactctatcagtttaggcacacagcgcagtgtgatctcaaatgaatctcatgaaggcaacgatcaatttgccggccacctccgattagcgcacagtgccaaatgtttcatcccgtcctccccgacgtctctatggtacgggtttggtcgattgttgatcgtggaaaaagaatcgaagcccgaaagcttcagactttccgacgaagcttctgcagttttcggtgatctcttcggggttgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

264

Amino Acids

28.59

Weight (kDa)

4.57

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 680
AciI CCGC 2 cut(s) 10, 89
AclWI GGATC 1 cut(s) 101
AcoI YGGCCR 1 cut(s) 625
AcuI CTGAAG 2 cut(s) 243, 724
AcyI GRCGYC 1 cut(s) 677
AfaI GTAC 3 cut(s) 280, 517, 689
AfiI CCNNNNNNNGG 1 cut(s) 480
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 1 cut(s) 537
AluBI AGCT 5 cut(s) 7, 152, 449, 738, 758
AluI AGCT 5 cut(s) 7, 152, 449, 738, 758
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 1 cut(s) 684
AlwI GGATC 1 cut(s) 101
AoxI GGCC 1 cut(s) 625
ApeKI GCWGC 2 cut(s) 7, 13
AspLEI GCGC 2 cut(s) 579, 643
AsuHPI GGTGA 1 cut(s) 785
BbsI GAAGAC 3 cut(s) 163, 435, 476
Bbv12I GWGCWC 1 cut(s) 463
BccI CCATC 3 cut(s) 299, 368, 529
BcgI CGANNNNNNTGC 4 cut(s) 602, 636, 743, 777
BclI TGATCA 2 cut(s) 409, 508
BcoDI GTCTC 1 cut(s) 684
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 762
BfrI CTTAAG 1 cut(s) 544
BglII AGATCT 1 cut(s) 64
BisI GCNGC 4 cut(s) 8, 11, 14, 89
BlsI GCNGC 4 cut(s) 9, 12, 15, 90
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 3 cut(s) 163, 435, 476
BpmI CTGGAG 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 677
BsaJI CCNNGG 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 480
Bse118I RCCGGY 1 cut(s) 623
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 2 cut(s) 379, 660
BseLI CCNNNNNNNGG 1 cut(s) 480
BseRI GAGGAG 1 cut(s) 499
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 1 cut(s) 627
BsiHKAI GWGCWC 1 cut(s) 463
BsiSI CCGG 1 cut(s) 624
BslI CCNNNNNNNGG 1 cut(s) 480
BsmAI GTCTC 1 cut(s) 684
BsmBI CGTCTC 1 cut(s) 684
BsnI GGCC 1 cut(s) 627
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 708, 775
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 2 cut(s) 10, 89
BspANI GGCC 1 cut(s) 627
BspHI TCATGA 2 cut(s) 115, 601
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 1 cut(s) 101
BspTI CTTAAG 1 cut(s) 544
BsrFI RCCGGY 1 cut(s) 623
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 708, 775
BssNI GRCGYC 1 cut(s) 677
BssT1I CCWWGG 1 cut(s) 433
Bst4CI ACNGT 1 cut(s) 647
Bst6I CTCTTC 2 cut(s) 168, 785
BstACI GRCGYC 1 cut(s) 677
BstAFI CTTAAG 1 cut(s) 544
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 4 cut(s) 82, 86, 132, 625
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 2 cut(s) 379, 660
BstHHI GCGC 2 cut(s) 579, 643
BstKTI GATC 8 cut(s) 67, 109, 412, 511, 588, 616, 711, 778
BstMAI GTCTC 1 cut(s) 684
BstMBI GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 708, 775
BstMWI GCNNNNNNNGC 4 cut(s) 13, 191, 576, 647
BstSFI CTRYAG 1 cut(s) 762
BstV2I GAAGAC 3 cut(s) 163, 435, 476
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 1 cut(s) 627
BtgI CCRYGG 1 cut(s) 433
BtsCI GGATG 2 cut(s) 379, 660
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 2 cut(s) 586, 652
Cac8I GCNNGC 4 cut(s) 82, 86, 132, 625
CciI TCATGA 2 cut(s) 115, 601
CfoI GCGC 2 cut(s) 579, 643
Cfr10I RCCGGY 1 cut(s) 623
Csp6I GTAC 3 cut(s) 279, 516, 688
CviAII CATG 7 cut(s) 74, 116, 413, 434, 455, 602, 792
CviJI RGCY 9 cut(s) 7, 13, 88, 152, 449, 627, 730, 738, 758
CviKI_1 RGCY 9 cut(s) 7, 13, 88, 152, 449, 627, 730, 738, 758
CviQI GTAC 3 cut(s) 279, 516, 688
DpnI GATC 8 cut(s) 66, 108, 411, 510, 587, 615, 710, 777
DpnII GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 708, 775
EaeI YGGCCR 1 cut(s) 625
Eam1104I CTCTTC 2 cut(s) 168, 785
EarI CTCTTC 2 cut(s) 168, 785
Eco130I CCWWGG 1 cut(s) 433
Eco57I CTGAAG 2 cut(s) 243, 724
EcoT14I CCWWGG 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 433
Esp3I CGTCTC 1 cut(s) 684
FaeI CATG 7 cut(s) 77, 119, 416, 437, 458, 605, 795
FatI CATG 7 cut(s) 73, 115, 412, 433, 454, 601, 791
FbaI TGATCA 2 cut(s) 409, 508
Fnu4HI GCNGC 4 cut(s) 8, 11, 14, 89
FokI GGATG 2 cut(s) 386, 647
Fsp4HI GCNGC 4 cut(s) 8, 11, 14, 89
FspBI CTAG 1 cut(s) 492
GlaI GCGC 2 cut(s) 578, 642
GluI GCNGC 4 cut(s) 8, 11, 14, 89
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 627
HapII CCGG 1 cut(s) 624
HhaI GCGC 2 cut(s) 579, 643
Hin1I GRCGYC 1 cut(s) 677
Hin1II CATG 7 cut(s) 77, 119, 416, 437, 458, 605, 795
Hin6I GCGC 2 cut(s) 577, 641
HinP1I GCGC 2 cut(s) 577, 641
HindIII AAGCTT 2 cut(s) 736, 756
HinfI GANTC 5 cut(s) 198, 381, 554, 596, 722
HpaII CCGG 1 cut(s) 624
HphI GGTGA 1 cut(s) 785
Hpy188I TCNGA 7 cut(s) 223, 256, 301, 526, 635, 743, 751
Hpy188III TCNNGA 4 cut(s) 116, 290, 464, 602
Hpy99I CGWCG 2 cut(s) 679, 755
HpyAV CCTTC 2 cut(s) 307, 599
HpyCH4III ACNGT 1 cut(s) 647
HpyCH4IV ACGT 2 cut(s) 204, 677
HpyCH4V TGCA 6 cut(s) 80, 134, 185, 500, 764, 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 191, 576, 647
HpySE526I ACGT 2 cut(s) 204, 677
Hsp92I GRCGYC 1 cut(s) 677
Hsp92II CATG 7 cut(s) 77, 119, 416, 437, 458, 605, 795
HspAI GCGC 2 cut(s) 577, 641
KroI GCCGGC 1 cut(s) 623
KroNI GCCGGC 1 cut(s) 625
Ksp22I TGATCA 2 cut(s) 409, 508
Kzo9I GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 708, 775
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 492
MaeII ACGT 2 cut(s) 204, 677
MalI GATC 8 cut(s) 66, 108, 411, 510, 587, 615, 710, 777
MboI GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 708, 775
MboII GAAGA 9 cut(s) 155, 168, 236, 257, 357, 440, 481, 525, 772
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 5 cut(s) 250, 386, 403, 537, 617
MlyI GAGTC 1 cut(s) 548
MmeI TCCRAC 1 cut(s) 774
MnlI CCTC 7 cut(s) 149, 171, 371, 477, 480, 641, 679
MroNI GCCGGC 1 cut(s) 623
MseI TTAA 3 cut(s) 234, 402, 545
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 449
MspCI CTTAAG 1 cut(s) 544
MspI CCGG 1 cut(s) 624
MunI CAATTG 1 cut(s) 537
MwoI GCNNNNNNNGC 4 cut(s) 13, 191, 576, 647
NaeI GCCGGC 1 cut(s) 625
NcoI CCATGG 1 cut(s) 433
NdeII GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 708, 775
NgoMIV GCCGGC 1 cut(s) 623
NlaIII CATG 7 cut(s) 77, 119, 416, 437, 458, 605, 795
PagI TCATGA 2 cut(s) 115, 601
PdiI GCCGGC 1 cut(s) 625
PfeI GAWTC 4 cut(s) 198, 381, 596, 722
PkrI GCNGC 4 cut(s) 9, 12, 15, 90
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
PstI CTGCAG 1 cut(s) 766
PsuI RGATCY 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 3 cut(s) 280, 517, 689
RsaNI GTAC 3 cut(s) 279, 516, 688
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 3 cut(s) 234, 402, 545
SatI GCNGC 4 cut(s) 8, 11, 14, 89
Sau3AI GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 708, 775
SchI GAGTC 1 cut(s) 548
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 762
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 462, 544
SmoI CTYRAG 2 cut(s) 462, 544
Sse9I AATT 5 cut(s) 250, 386, 403, 537, 617
SsiI CCGC 2 cut(s) 10, 89
SspMI CTAG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 1 cut(s) 647
TaiI ACGT 2 cut(s) 207, 680
TaqI TCGA 3 cut(s) 141, 700, 725
TasI AATT 5 cut(s) 250, 386, 403, 537, 617
TauI GCSGC 2 cut(s) 13, 91
TfiI GAWTC 4 cut(s) 198, 381, 596, 722
Tru1I TTAA 3 cut(s) 234, 402, 545
Tru9I TTAA 3 cut(s) 234, 402, 545
TscAI CASTG 2 cut(s) 586, 652
TseI GCWGC 2 cut(s) 7, 13
TspRI CASTG 2 cut(s) 586, 652
Vha464I CTTAAG 1 cut(s) 544
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XspI CTAG 1 cut(s) 492
ZraI GACGTC 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.