RchiOBHm_Chr7g0239421

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000220
Physical Location & Seq
Reverse (-)
64880943 .. 64881651
709 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21456

Sequence Viewer

Length: 696 bp
ATGCCATCAAAAGATAGTCGATCAAAACAAAGCACAATTAAATCATTACTAAAAGGTGGTAGAGAACTATTGGCAACAATGGTGTCCAAATACCACATATATGATGCTGTCCCTTTTAACAAAGCTGATTCTCCACATTTCCAAAACATGTTGACTACAGCTGGAAGCGGAACAGGTGGTGGAGGTGAAAGATATGAATATGGACAATCTTCTGTGGATGGAGGATTCCAATTTACCTGTGAAGGTAATTTTGATCATGCCACCCAAGATGAAGACCACGGAGTGAGAACAGCTGGTCATGGTGCTCAAGAGAAGACCCGATATGGGAGCAGGACTAGAGGTGCAACTAATGATCAAAGTACCCCATCTGATGTTTCTTCAATTGCTTTAAGTTTTGACTCTATCAGTTTAGGCACAGAGCGCAGTGGGATCTCAAATGAATCTCATGAAAGCAACAATCAATTTGGTTATGATGCTTATGGATATAATCAATATGGAGAAGTATATGATCAGTCATCTAGTTGGGTTCATCCTTATTATCCCCTTATAGGGGAAACAGTCGGCAGCTCTAAAGAGATCTATAACTATCATGTTCATCACTACAATTCGCACTATATGGGTCATATGTCTTGGTCTGATTATTGCATTTTCGTAGACCAGCGAGCGGCTTTTCAACCGCCTAGAGTCTCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

231

Amino Acids

25.64

Weight (kDa)

5.79

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 665
AccI GTMKAC 1 cut(s) 654
AciI CCGC 3 cut(s) 168, 665, 677
AclWI GGATC 1 cut(s) 437
AdeI CACNNNGTG 1 cut(s) 283
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 5 cut(s) 324, 548, 549, 550, 664
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 2 cut(s) 381, 674
AluBI AGCT 4 cut(s) 125, 161, 293, 567
AluI AGCT 4 cut(s) 125, 161, 293, 567
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 1 cut(s) 691
AlwI GGATC 1 cut(s) 437
ApeKI GCWGC 1 cut(s) 564
AspLEI GCGC 1 cut(s) 423
AsuHPI GGTGA 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 279, 320
Bbv12I GWGCWC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 576
BccI CCATC 3 cut(s) 13, 212, 373
BclI TGATCA 3 cut(s) 253, 352, 508
BcoDI GTCTC 1 cut(s) 691
BfaI CTAG 3 cut(s) 336, 519, 681
BfmI CTRYAG 1 cut(s) 156
BglII AGATCT 1 cut(s) 576
BisI GCNGC 2 cut(s) 565, 666
BlsI GCNGC 2 cut(s) 566, 667
BmsI GCATC 2 cut(s) 94, 463
BpiI GAAGAC 2 cut(s) 279, 320
BpuEI CTTGAG 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 277
Bsc4I CCNNNNNNNGG 5 cut(s) 324, 548, 549, 550, 664
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 2 cut(s) 223, 529
BseLI CCNNNNNNNGG 5 cut(s) 324, 548, 549, 550, 664
BseXI GCAGC 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 307
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 5 cut(s) 324, 548, 549, 550, 664
BsmAI GTCTC 1 cut(s) 691
BsmFI GGGAC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 6 cut(s) 20, 253, 352, 429, 508, 576
BspACI CCGC 3 cut(s) 168, 665, 677
BspHI TCATGA 1 cut(s) 445
BspPI GGATC 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 665
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 6 cut(s) 20, 253, 352, 429, 508, 576
Bst4CI ACNGT 1 cut(s) 559
BstC8I GCNNGC 1 cut(s) 663
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 2 cut(s) 223, 529
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 6 cut(s) 23, 256, 355, 432, 511, 579
BstMAI GTCTC 1 cut(s) 691
BstMBI GATC 6 cut(s) 20, 253, 352, 429, 508, 576
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 576
BstV2I GAAGAC 2 cut(s) 279, 320
BstX2I RGATCY 2 cut(s) 429, 576
BstYI RGATCY 2 cut(s) 429, 576
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 2 cut(s) 223, 529
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 430
Cac8I GCNNGC 1 cut(s) 663
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 423
Csp6I GTAC 1 cut(s) 360
CviAII CATG 5 cut(s) 148, 257, 299, 446, 590
CviJI RGCY 5 cut(s) 125, 161, 293, 567, 668
CviKI_1 RGCY 5 cut(s) 125, 161, 293, 567, 668
CviQI GTAC 1 cut(s) 360
DpnI GATC 6 cut(s) 22, 255, 354, 431, 510, 578
DpnII GATC 6 cut(s) 20, 253, 352, 429, 508, 576
DraIII CACNNNGTG 1 cut(s) 283
FaeI CATG 5 cut(s) 151, 260, 302, 449, 593
FaqI GGGAC 1 cut(s) 95
FatI CATG 5 cut(s) 147, 256, 298, 445, 589
FauNDI CATATG 1 cut(s) 624
FbaI TGATCA 3 cut(s) 253, 352, 508
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 2 cut(s) 565, 666
FokI GGATG 2 cut(s) 230, 516
Fsp4HI GCNGC 2 cut(s) 565, 666
FspBI CTAG 3 cut(s) 336, 519, 681
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 565, 666
HhaI GCGC 1 cut(s) 423
Hin1II CATG 5 cut(s) 151, 260, 302, 449, 593
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HinfI GANTC 5 cut(s) 128, 225, 398, 440, 684
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 2 cut(s) 153, 655
Hpy188I TCNGA 2 cut(s) 370, 637
Hpy188III TCNNGA 2 cut(s) 308, 446
Hpy8I GTNNAC 2 cut(s) 153, 655
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4V TGCA 2 cut(s) 344, 645
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
Hsp92II CATG 5 cut(s) 151, 260, 302, 449, 593
HspAI GCGC 1 cut(s) 421
Ksp22I TGATCA 3 cut(s) 253, 352, 508
Kzo9I GATC 6 cut(s) 20, 253, 352, 429, 508, 576
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 6 cut(s) 147, 159, 250, 279, 316, 671
Lsp1109I GCAGC 1 cut(s) 576
LweI GCATC 2 cut(s) 94, 463
MaeI CTAG 3 cut(s) 336, 519, 681
MalI GATC 6 cut(s) 22, 255, 354, 431, 510, 578
MbiI CCGCTC 1 cut(s) 665
MboI GATC 6 cut(s) 20, 253, 352, 429, 508, 576
MboII GAAGA 4 cut(s) 201, 284, 325, 369
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 2 cut(s) 429, 576
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 6 cut(s) 36, 230, 247, 381, 461, 604
MlyI GAGTC 2 cut(s) 392, 693
MnlI CCTC 3 cut(s) 176, 215, 332
MseI TTAA 3 cut(s) 39, 117, 389
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 161, 293
MunI CAATTG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 420
NdeI CATATG 1 cut(s) 624
NdeII GATC 6 cut(s) 20, 253, 352, 429, 508, 576
NlaIII CATG 5 cut(s) 151, 260, 302, 449, 593
NspI RCATGY 1 cut(s) 151
PagI TCATGA 1 cut(s) 445
PciI ACATGT 1 cut(s) 147
PfeI GAWTC 3 cut(s) 128, 225, 440
PkrI GCNGC 2 cut(s) 566, 667
PleI GAGTC 2 cut(s) 392, 692
PpsI GAGTC 2 cut(s) 392, 692
PscI ACATGT 1 cut(s) 147
PsuI RGATCY 2 cut(s) 429, 576
PvuII CAGCTG 2 cut(s) 161, 293
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 3 cut(s) 39, 117, 389
SatI GCNGC 2 cut(s) 565, 666
Sau3AI GATC 6 cut(s) 20, 253, 352, 429, 508, 576
SchI GAGTC 2 cut(s) 392, 693
SduI GDGCHC 1 cut(s) 307
SfaNI GCATC 2 cut(s) 94, 463
SfcI CTRYAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 6 cut(s) 36, 230, 247, 381, 461, 604
SsiI CCGC 3 cut(s) 168, 665, 677
SspMI CTAG 3 cut(s) 336, 519, 681
TaaI ACNGT 1 cut(s) 559
TaqI TCGA 1 cut(s) 19
TasI AATT 6 cut(s) 36, 230, 247, 381, 461, 604
TauI GCSGC 1 cut(s) 668
TfiI GAWTC 3 cut(s) 128, 225, 440
Tru1I TTAA 3 cut(s) 39, 117, 389
Tru9I TTAA 3 cut(s) 39, 117, 389
TscAI CASTG 1 cut(s) 430
TseI GCWGC 1 cut(s) 564
TspDTI ATGAA 6 cut(s) 210, 285, 453, 462, 518, 584
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 1 cut(s) 430
XceI RCATGY 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 3 cut(s) 336, 519, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.