Rh2BG222900

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000220
Physical Location & Seq
Forward (+)
21551520 .. 21564609
13090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG222900.1

Sequence Viewer

Length: 162 bp
ATGTTCCAGTATAGTGAAGGAATTGGTGATGATCCAGAGCTACTAGACGCCCTTCACTCAGTTTTTGCAAAGTTAGACCCAAACTCCATAGGCATCGCACAATTTGGAAATGAGGTGTATCATAGATGGCAAATACCAACAAGCTATGGAAAAAGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

53

Amino Acids

5.96

Weight (kDa)

4.63

Isoelectric Point (pI)

15.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 48
AluBI AGCT 2 cut(s) 40, 144
AluI AGCT 2 cut(s) 40, 144
AlwI GGATC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 38
BccI CCATC 1 cut(s) 120
BfaI CTAG 1 cut(s) 44
BmsI GCATC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bse1I ACTGG 1 cut(s) 7
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 7
Bsp143I GATC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 71
BspPI GGATC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 7
BssMI GATC 1 cut(s) 31
BssNI GRCGYC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 58
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 79
CseI GACGC 1 cut(s) 56
CviJI RGCY 2 cut(s) 40, 144
CviKI_1 RGCY 2 cut(s) 40, 144
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
FaiI YATR 4 cut(s) 12, 89, 123, 147
FspBI CTAG 1 cut(s) 44
HgaI GACGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 48
HphI GGTGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 11, 62
HpyCH4V TGCA 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 2 cut(s) 20, 48
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 44
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MfeI CAATTG 1 cut(s) 157
MluCI AATT 3 cut(s) 21, 101, 157
MnlI CCTC 1 cut(s) 106
MunI CAATTG 1 cut(s) 157
NdeII GATC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 31
SetI ASST 3 cut(s) 42, 117, 146
SfaNI GCATC 1 cut(s) 102
SgeI CNNG 4 cut(s) 19, 47, 56, 153
Sse9I AATT 3 cut(s) 21, 101, 157
SspMI CTAG 1 cut(s) 44
TasI AATT 3 cut(s) 21, 101, 157
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.