Rmu_sc0002530.1_g000003

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002530.1
OG0000220
Physical Location & Seq
Reverse (-)
15132 .. 15851
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002530.1_g000003.1.cds

Sequence Viewer

Length: 720 bp
atgaagctgcggctgcgagataaacaggcaaagaataatgtggtcaatgaaaacaactatatagatctacttcatgttgcaagcgagccgcttgataatggcattgatccacttcatgattggattatgcctgcacacctcgatgatgaagctggaagacctcttccacaagttgtagaaactgcaactaatgctggaatcaacgtagagagagtcttatctgaagaagttgttaaaaacccagaagataattcagatggtgatgatgcatggggtggtacagcaactccagatagttctgatgatggtggagagggtggaagcggaacaggtggtggaggtgaaagatatgaatatggacaatcttctgtggatgaaggattccaatttacctgtgaaggtaattttgatcatgccacccaagatgaagaccacggagtgagaacagctggtcatggtgctgaagagaagacccgatatgggaggaggactagaggtgcaactgatgatcaaagtaccccatctgatgtttcttcaattgccttaagttttgactctatcagtttagacatagagcgcagtgagatctcaaatgaatctcatgaaggcaacaatcaatttggttatgatgcttatggatataatcaatatggagaaatatatgatcatgtagaccagagagcggcttttcaacctcctagagtctctttttggatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

239

Amino Acids

26.2

Weight (kDa)

4.32

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 683
AccI GTMKAC 1 cut(s) 672
AciI CCGC 4 cut(s) 10, 89, 324, 683
AclWI GGATC 1 cut(s) 101
AcuI CTGAAG 2 cut(s) 243, 483
AdeI CACNNNGTG 1 cut(s) 439
AfaI GTAC 2 cut(s) 280, 517
AfiI CCNNNNNNNGG 2 cut(s) 480, 682
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 2 cut(s) 537, 692
AluBI AGCT 3 cut(s) 7, 152, 449
AluI AGCT 3 cut(s) 7, 152, 449
Alw26I GTCTC 1 cut(s) 709
AlwI GGATC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 7, 13
AspLEI GCGC 1 cut(s) 579
AsuHPI GGTGA 2 cut(s) 272, 353
BbsI GAAGAC 3 cut(s) 163, 435, 476
BccI CCATC 3 cut(s) 251, 299, 529
BclI TGATCA 3 cut(s) 409, 508, 664
BcoDI GTCTC 1 cut(s) 709
BfaI CTAG 2 cut(s) 492, 699
BfrI CTTAAG 1 cut(s) 544
BglII AGATCT 2 cut(s) 64, 585
BisI GCNGC 5 cut(s) 8, 11, 14, 89, 684
BlsI GCNGC 5 cut(s) 9, 12, 15, 90, 685
BmsI GCATC 2 cut(s) 256, 619
BpiI GAAGAC 3 cut(s) 163, 435, 476
BpmI CTGGAG 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 480, 682
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 2 cut(s) 379, 720
BseLI CCNNNNNNNGG 2 cut(s) 480, 682
BseRI GAGGAG 1 cut(s) 499
BsgI GTGCAG 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 480, 682
BsmAI GTCTC 1 cut(s) 709
Bsp143I GATC 6 cut(s) 64, 106, 409, 508, 585, 664
BspACI CCGC 4 cut(s) 10, 89, 324, 683
BspHI TCATGA 2 cut(s) 115, 601
BspPI GGATC 1 cut(s) 101
BspTI CTTAAG 1 cut(s) 544
BsrBI CCGCTC 1 cut(s) 683
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 6 cut(s) 64, 106, 409, 508, 585, 664
Bst6I CTCTTC 2 cut(s) 168, 459
BstAFI CTTAAG 1 cut(s) 544
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 82, 86, 132
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 2 cut(s) 379, 720
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 6 cut(s) 67, 109, 412, 511, 588, 667
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 6 cut(s) 64, 106, 409, 508, 585, 664
BstMWI GCNNNNNNNGC 2 cut(s) 13, 191
BstV2I GAAGAC 3 cut(s) 163, 435, 476
BstX2I RGATCY 2 cut(s) 64, 585
BstYI RGATCY 2 cut(s) 64, 585
BtgI CCRYGG 1 cut(s) 433
BtsCI GGATG 2 cut(s) 379, 720
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 586
Cac8I GCNNGC 3 cut(s) 82, 86, 132
CciI TCATGA 2 cut(s) 115, 601
CfoI GCGC 1 cut(s) 579
Csp6I GTAC 2 cut(s) 279, 516
CviAII CATG 7 cut(s) 74, 116, 270, 413, 455, 602, 668
CviJI RGCY 6 cut(s) 7, 13, 88, 152, 449, 686
CviKI_1 RGCY 6 cut(s) 7, 13, 88, 152, 449, 686
CviQI GTAC 2 cut(s) 279, 516
DpnI GATC 6 cut(s) 66, 108, 411, 510, 587, 666
DpnII GATC 6 cut(s) 64, 106, 409, 508, 585, 664
DraIII CACNNNGTG 1 cut(s) 439
Eam1104I CTCTTC 2 cut(s) 168, 459
EarI CTCTTC 2 cut(s) 168, 459
Eco57I CTGAAG 2 cut(s) 243, 483
EcoT22I ATGCAT 1 cut(s) 271
FaeI CATG 7 cut(s) 77, 119, 273, 416, 458, 605, 671
FatI CATG 7 cut(s) 73, 115, 269, 412, 454, 601, 667
FbaI TGATCA 3 cut(s) 409, 508, 664
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 5 cut(s) 8, 11, 14, 89, 684
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 5 cut(s) 8, 11, 14, 89, 684
FspBI CTAG 2 cut(s) 492, 699
GlaI GCGC 1 cut(s) 578
GluI GCNGC 5 cut(s) 8, 11, 14, 89, 684
GsuI CTGGAG 1 cut(s) 273
HhaI GCGC 1 cut(s) 579
Hin1II CATG 7 cut(s) 77, 119, 273, 416, 458, 605, 671
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HinfI GANTC 6 cut(s) 198, 213, 381, 554, 596, 702
HphI GGTGA 2 cut(s) 272, 353
Hpy166II GTNNAC 1 cut(s) 673
Hpy188I TCNGA 4 cut(s) 223, 256, 301, 526
Hpy188III TCNNGA 3 cut(s) 116, 290, 602
Hpy8I GTNNAC 1 cut(s) 673
HpyAV CCTTC 3 cut(s) 371, 392, 599
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 5 cut(s) 80, 134, 185, 269, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 191
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 7 cut(s) 77, 119, 273, 416, 458, 605, 671
HspAI GCGC 1 cut(s) 577
Ksp22I TGATCA 3 cut(s) 409, 508, 664
Kzo9I GATC 6 cut(s) 64, 106, 409, 508, 585, 664
LweI GCATC 2 cut(s) 256, 619
MaeI CTAG 2 cut(s) 492, 699
MaeII ACGT 1 cut(s) 204
MalI GATC 6 cut(s) 66, 108, 411, 510, 587, 666
MbiI CCGCTC 1 cut(s) 683
MboI GATC 6 cut(s) 64, 106, 409, 508, 585, 664
MboII GAAGA 9 cut(s) 155, 168, 236, 257, 357, 440, 476, 481, 525
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 64, 585
MluCI AATT 5 cut(s) 250, 386, 403, 537, 617
MlyI GAGTC 3 cut(s) 222, 548, 711
MnlI CCTC 8 cut(s) 149, 171, 307, 332, 477, 480, 488, 705
Mph1103I ATGCAT 1 cut(s) 271
MseI TTAA 2 cut(s) 234, 545
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 449
MspCI CTTAAG 1 cut(s) 544
MunI CAATTG 1 cut(s) 537
MwoI GCNNNNNNNGC 2 cut(s) 13, 191
NdeII GATC 6 cut(s) 64, 106, 409, 508, 585, 664
NlaIII CATG 7 cut(s) 77, 119, 273, 416, 458, 605, 671
NsiI ATGCAT 1 cut(s) 271
PagI TCATGA 2 cut(s) 115, 601
PfeI GAWTC 3 cut(s) 198, 381, 596
PkrI GCNGC 5 cut(s) 9, 12, 15, 90, 685
PleI GAGTC 3 cut(s) 221, 548, 710
PpsI GAGTC 3 cut(s) 221, 548, 710
PsuI RGATCY 2 cut(s) 64, 585
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 2 cut(s) 280, 517
RsaNI GTAC 2 cut(s) 279, 516
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 234, 545
SatI GCNGC 5 cut(s) 8, 11, 14, 89, 684
Sau3AI GATC 6 cut(s) 64, 106, 409, 508, 585, 664
SchI GAGTC 3 cut(s) 222, 548, 711
SfaNI GCATC 2 cut(s) 256, 619
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 5 cut(s) 250, 386, 403, 537, 617
SsiI CCGC 4 cut(s) 10, 89, 324, 683
SspMI CTAG 2 cut(s) 492, 699
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 141
TasI AATT 5 cut(s) 250, 386, 403, 537, 617
TauI GCSGC 3 cut(s) 13, 91, 686
TfiI GAWTC 3 cut(s) 198, 381, 596
Tru1I TTAA 2 cut(s) 234, 545
Tru9I TTAA 2 cut(s) 234, 545
TscAI CASTG 1 cut(s) 586
TseI GCWGC 2 cut(s) 7, 13
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 1 cut(s) 586
Vha464I CTTAAG 1 cut(s) 544
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 672
XspI CTAG 2 cut(s) 492, 699
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.