RchiOBHm_Chr4g0384811

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000220
Physical Location & Seq
Reverse (-)
156299 .. 158574
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35836

Sequence Viewer

Length: 1944 bp
ATGAGGAGAAAATGTACTGCAAAATATCAAAAGGATTCAATAATCCGTGATACTCGAGAAGAATTGCGATCAGGGTTATCACAACAATTGAACTCTGAAGATGAAGATGAAGGTTTTGTAGGTCAGCATGATGTAGATCCCCGTGATTATAAAGCTGCTATGAGAGCATCAAGACAATCAGAATGGGAAAGGGAGCAAGGTATAAGTAGAGGTGTTTCAGGGCCTGGAGGGACAAGTCGAAGCCAACCAAAATTTGATAGATCAAAAAGTGTACGACAAGAGCATGAAGACCAACCTCAAGCTTCATTCCCACAGTCACTTTATAAATCCAATGCTGCAAAACAAAAGAGCATCATTGACTCCATGTCAATGGGAAGCCTCAAGGAGAAGCTTGGTCAAGTATGTGGGAAGTTTTTCATATATACCAATGTCCCTGCGTACAAAGCGGAATCTCATGAGTACAAAAACATGATAATTGGAGCACAAGAGTGTCCAAATGTTCCTCCGCCAAGTTCGTTTCAGATAATGAACAAATATTTGGCCATGGAACATAAGGAAATAACTGAATATATAAATAGCCAAAGAAAAATGTGGAAAACATATGGCTGCACCATAATGGCTGATGGGTGGTCCGGTCCAACAAGAATGCAAGTTATCAACTTCATGGTTTACTGTAAGGGTAAGACTGTGTTTTTGAAGTCTGTCAATGCATCAAGTGATATAAGGGATCACAAATACATTGCCAAGCTATTTAAAGATGTCATTGATGAAGTGGGGAAGGAGAATGTGGTTCAAATATGTACCGATAATGGCTCAGCATTTGTGAAGGCTGGTAAAACATTATCGGAACGTTATAACTTCTATTGGACTCCATGTGCTGCACACTGCATCGACTTAATGTTTGAAGATATTGGTAAAAAGAAAAAGGTAAGTGATGTGATTACTATTGCTAGACTCGTGACTGTATATATCTACAATCACGGATGGGTGCTTGCTCTTATGAGAAAAATATGTAATGGTGATTTGATTCGACCAGGACCAACACGGTTTGCCACTAATTACATTTCTCTTCAAAGCCTTTTCCAAAAGAAGGCTGGACTTAAACAATTGTTTACTTGTGATGACTGGGTTACTAGCAAATATAGTCGAAGCAAGGAGGGAAGACGTATAGAGGAACTCGTTCTTGAAAACATGTTTTGGGACAATGTGCAAGCAGTGATTTCTATTTACGAGCCATTATACGGTGTTCTTCGAATAGTTGACACAGAGGTTAACCCGACAATGCCAATGCTGTATGATTTATTTAAGAAGGTGAGAATAAAGCTAGAAGAAGTCAGGAATACAGTTTGGGTCAGAAAAATCATCAACGATAGATGGTTTAAGCAATTGTGTCATCCATTACATGCAGCAGCTTATTATTTGAATCCAATGTTCCAGTATAGTGAAGGAATTGGTGATGATCCAGAGCTACTAGACGCCCTTCACTCAGTTTTTGCAAAGTTAGACCCAAACTCCATAGGCATCGCACAATTCGGAAATGAGATTATAAGCTTTAGATACTCATCATACGGATTTGGAAGACCAGCTGCCATTGCTGCAAGGAAAGCAATGACTTCATATGAATGGTGGAACATGTATGGGGGTGATGCACCTACACTTCGTAAATTGGCAATGAAGATCCTATCTCAAACCACATCATCTTCTGCTTGCGAGCGAAATTGGAGCACATTTGCTCTTATCCATACGAAGCAAAGAAATCGTCTGGCACATAACAAACTCGAGCAAATTGTGTATTGTTATTACAACATGAAGCTACAATTGCGAGATGCAAAAGCCGCTGCAGATAGAGTTGCGGAGACCAGTTATTTAGACCTATTCAATATAGCTGCAGATATAGGTGCGGAGGAAACTGCTGATCCAATATACCATTGGATCCAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

647

Amino Acids

74.24

Weight (kDa)

8.96

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 170 - 319 2.5e-52 Domain of unknown function (DUF659)
Dimer_Tnp_hAT PF05699 536 - 603 3.8e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 150, 324, 855, 1547
AciI CCGC 5 cut(s) 446, 506, 1836, 1853, 1901
AclI AACGTT 1 cut(s) 850
AclWI GGATC 7 cut(s) 131, 735, 1454, 1672, 1910, 1927, 1940
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 1476
AfaI GTAC 5 cut(s) 16, 273, 440, 461, 802
AfiI CCNNNNNNNGG 2 cut(s) 1090, 1241
AflIII ACRYGT 2 cut(s) 1191, 1632
AgsI TTSAA 9 cut(s) 39, 91, 697, 794, 905, 1073, 1187, 1423, 1879
AhdI GACNNNNNGTC 1 cut(s) 364
AjnI CCWGG 2 cut(s) 223, 1033
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AleI CACNNNNGTG 1 cut(s) 487
Alw21I GWGCWC 2 cut(s) 484, 1727
Alw26I GTCTC 1 cut(s) 1850
AlwI GGATC 7 cut(s) 131, 735, 1454, 1672, 1910, 1927, 1940
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 2 cut(s) 54, 1778
AoxI GGCC 2 cut(s) 221, 540
ApoI RAATTY 1 cut(s) 251
ArsI GACNNNNNNTTYG 6 cut(s) 676, 708, 884, 916, 1744, 1776
Asp700I GAANNNNTTC 2 cut(s) 413, 1179
AspS9I GGNCC 4 cut(s) 221, 630, 635, 1037
AsuHPI GGTGA 4 cut(s) 1031, 1324, 1466, 1655
AsuII TTCGAA 1 cut(s) 1252
AvaI CYCGRG 2 cut(s) 54, 1778
AvaII GGWCC 3 cut(s) 630, 635, 1037
BalI TGGCCA 1 cut(s) 542
BamHI GGATCC 1 cut(s) 1932
BauI CACGAG 1 cut(s) 956
BbsI GAAGAC 3 cut(s) 294, 1168, 1585
Bbv12I GWGCWC 2 cut(s) 484, 1727
BccI CCATC 3 cut(s) 617, 978, 1368
BcgI CGANNNNNNTGC 2 cut(s) 1739, 1773
BciT130I CCWGG 2 cut(s) 225, 1035
BcoDI GTCTC 1 cut(s) 1850
BfaI CTAG 4 cut(s) 951, 1134, 1325, 1472
BfmI CTRYAG 2 cut(s) 1839, 1887
BlpI GCTNAGC 1 cut(s) 814
Bme1390I CCNGG 2 cut(s) 225, 1035
Bme18I GGWCC 3 cut(s) 630, 635, 1037
BmeRI GACNNNNNGTC 1 cut(s) 364
BmeT110I CYCGRG 2 cut(s) 54, 1778
BmgT120I GGNCC 4 cut(s) 221, 630, 635, 1037
BmiI GGNNCC 1 cut(s) 1934
BmrFI CCNGG 2 cut(s) 225, 1035
BmrI ACTGGG 1 cut(s) 1135
BmsI GCATC 7 cut(s) 176, 360, 719, 897, 1530, 1636, 1816
BmuI ACTGGG 1 cut(s) 1135
BpiI GAAGAC 3 cut(s) 294, 1168, 1585
BpmI CTGGAG 1 cut(s) 246
Bpu1102I GCTNAGC 1 cut(s) 814
Bpu14I TTCGAA 1 cut(s) 1252
BpuEI CTTGAG 2 cut(s) 282, 365
BsaBI GATNNNNATC 2 cut(s) 135, 1561
BsaHI GRCGYC 1 cut(s) 1476
BsaI GGTCTC 1 cut(s) 1850
BsaJI CCNNGG 1 cut(s) 543
BsaWI WCCGGW 1 cut(s) 632
BsaXI ACNNNNNCTCC 3 cut(s) 28, 1496, 1526
Bsc4I CCNNNNNNNGG 2 cut(s) 1090, 1241
Bse1I ACTGG 3 cut(s) 1130, 1435, 1860
Bse3DI GCAATG 4 cut(s) 738, 1590, 1614, 1677
Bse8I GATNNNNATC 2 cut(s) 135, 1561
BseBI CCWGG 2 cut(s) 225, 1035
BseDI CCNNGG 1 cut(s) 543
BseGI GGATG 2 cut(s) 989, 1393
BseJI GATNNNNATC 2 cut(s) 135, 1561
BseLI CCNNNNNNNGG 2 cut(s) 1090, 1241
BseMI GCAATG 4 cut(s) 738, 1590, 1614, 1677
BseMII CTCAG 2 cut(s) 828, 1500
BseNI ACTGG 3 cut(s) 1130, 1435, 1860
BseRI GAGGAG 1 cut(s) 19
BsgI GTGCAG 2 cut(s) 592, 864
BshFI GGCC 2 cut(s) 223, 542
BsiHKAI GWGCWC 2 cut(s) 484, 1727
BsiHKCI CYCGRG 2 cut(s) 54, 1778
BsiSI CCGG 1 cut(s) 633
BslFI GGGAC 3 cut(s) 244, 416, 1214
BslI CCNNNNNNNGG 2 cut(s) 1090, 1241
BsmAI GTCTC 1 cut(s) 1850
BsmFI GGGAC 3 cut(s) 244, 416, 1214
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 2 cut(s) 223, 542
Bso31I GGTCTC 1 cut(s) 1850
BsoBI CYCGRG 2 cut(s) 54, 1778
Bsp119I TTCGAA 1 cut(s) 1252
Bsp1286I GDGCHC 2 cut(s) 484, 1727
Bsp143I GATC 8 cut(s) 68, 136, 260, 727, 1459, 1677, 1915, 1932
Bsp1720I GCTNAGC 1 cut(s) 814
Bsp19I CCATGG 1 cut(s) 543
BspACI CCGC 5 cut(s) 446, 506, 1836, 1853, 1901
BspANI GGCC 2 cut(s) 223, 542
BspCNI CTCAG 2 cut(s) 827, 1499
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 1934
BspMAI CTGCAG 2 cut(s) 1843, 1891
BspPI GGATC 7 cut(s) 131, 735, 1454, 1672, 1910, 1927, 1940
BspT104I TTCGAA 1 cut(s) 1252
BspTNI GGTCTC 1 cut(s) 1850
BsrDI GCAATG 4 cut(s) 738, 1590, 1614, 1677
BsrI ACTGG 3 cut(s) 1130, 1435, 1860
BssECI CCNNGG 1 cut(s) 543
BssMI GATC 8 cut(s) 68, 136, 260, 727, 1459, 1677, 1915, 1932
BssNI GRCGYC 1 cut(s) 1476
BssSI CACGAG 1 cut(s) 956
BssT1I CCWWGG 1 cut(s) 543
Bst2BI CACGAG 1 cut(s) 956
Bst2UI CCWGG 2 cut(s) 225, 1035
Bst4CI ACNGT 7 cut(s) 315, 674, 688, 964, 1047, 1244, 1345
Bst6I CTCTTC 1 cut(s) 1074
BstACI GRCGYC 1 cut(s) 1476
BstBI TTCGAA 1 cut(s) 1252
BstC8I GCNNGC 4 cut(s) 993, 1212, 1708, 1712
BstDEI CTNAG 2 cut(s) 814, 1486
BstDSI CCRYGG 1 cut(s) 543
BstF5I GGATG 2 cut(s) 989, 1393
BstKTI GATC 8 cut(s) 71, 139, 263, 730, 1462, 1680, 1918, 1935
BstMAI GTCTC 1 cut(s) 1850
BstMBI GATC 8 cut(s) 68, 136, 260, 727, 1459, 1677, 1915, 1932
BstMWI GCNNNNNNNGC 7 cut(s) 164, 443, 1592, 1595, 1604, 1819, 1835
BstNI CCWGG 2 cut(s) 225, 1035
BstNSI RCATGY 3 cut(s) 1195, 1406, 1636
BstSCI CCNGG 2 cut(s) 223, 1033
BstSFI CTRYAG 2 cut(s) 1839, 1887
BstV2I GAAGAC 3 cut(s) 294, 1168, 1585
BstX2I RGATCY 3 cut(s) 136, 1677, 1932
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 3 cut(s) 136, 1677, 1932
BsuRI GGCC 2 cut(s) 223, 542
BtgI CCRYGG 1 cut(s) 543
BtgZI GCGATG 1 cut(s) 1507
BtsCI GGATG 2 cut(s) 989, 1393
BtsI GCAGTG 2 cut(s) 883, 1221
BtsIMutI CAGTG 2 cut(s) 883, 1221
Cac8I GCNNGC 4 cut(s) 993, 1212, 1708, 1712
CaiI CAGNNNCTG 1 cut(s) 224
CciI TCATGA 1 cut(s) 454
Cfr13I GGNCC 4 cut(s) 221, 630, 635, 1037
CseI GACGC 1 cut(s) 1484
Csp6I GTAC 5 cut(s) 15, 272, 439, 460, 801
CviQI GTAC 5 cut(s) 15, 272, 439, 460, 801
DdeI CTNAG 2 cut(s) 814, 1486
DpnI GATC 8 cut(s) 70, 138, 262, 729, 1461, 1679, 1917, 1934
DpnII GATC 8 cut(s) 68, 136, 260, 727, 1459, 1677, 1915, 1932
DraI TTTAAA 1 cut(s) 754
DriI GACNNNNNGTC 1 cut(s) 364
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 1 cut(s) 1074
Eam1105I GACNNNNNGTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 1074
EciI GGCGGA 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 543
Eco31I GGTCTC 1 cut(s) 1850
Eco47I GGWCC 3 cut(s) 630, 635, 1037
Eco57I CTGAAG 1 cut(s) 117
Eco88I CYCGRG 2 cut(s) 54, 1778
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 223, 1033
EcoT14I CCWWGG 1 cut(s) 543
EcoT22I ATGCAT 1 cut(s) 712
ErhI CCWWGG 1 cut(s) 543
FaqI GGGAC 3 cut(s) 244, 416, 1214
FauNDI CATATG 2 cut(s) 601, 1618
FokI GGATG 2 cut(s) 996, 1380
FspBI CTAG 4 cut(s) 951, 1134, 1325, 1472
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 2 cut(s) 223, 542
HapII CCGG 1 cut(s) 633
HgaI GACGC 1 cut(s) 1484
Hin1I GRCGYC 1 cut(s) 1476
HincII GTYRAC 2 cut(s) 1261, 1273
HindII GTYRAC 2 cut(s) 1261, 1273
HindIII AAGCTT 3 cut(s) 300, 389, 1549
HinfI GANTC 7 cut(s) 35, 359, 449, 868, 954, 1027, 1423
HpaI GTTAAC 1 cut(s) 1273
HpaII CCGG 1 cut(s) 633
HphI GGTGA 4 cut(s) 1031, 1324, 1466, 1655
Hpy166II GTNNAC 5 cut(s) 272, 670, 1113, 1261, 1273
Hpy188I TCNGA 6 cut(s) 97, 181, 522, 847, 1355, 1535
Hpy188III TCNNGA 7 cut(s) 56, 171, 455, 958, 1184, 1336, 1463
Hpy8I GTNNAC 5 cut(s) 272, 670, 1113, 1261, 1273
HpyAV CCTTC 7 cut(s) 104, 772, 820, 1084, 1303, 1439, 1490
HpyCH4III ACNGT 7 cut(s) 315, 674, 688, 964, 1047, 1244, 1345
HpyCH4IV ACGT 2 cut(s) 850, 1165
HpyF10VI GCNNNNNNNGC 7 cut(s) 164, 443, 1592, 1595, 1604, 1819, 1835
HpyF3I CTNAG 2 cut(s) 814, 1486
HpySE526I ACGT 2 cut(s) 850, 1165
Hsp92I GRCGYC 1 cut(s) 1476
KspAI GTTAAC 1 cut(s) 1273
Kzo9I GATC 8 cut(s) 68, 136, 260, 727, 1459, 1677, 1915, 1932
LmnI GCTCC 3 cut(s) 193, 479, 1722
LweI GCATC 7 cut(s) 176, 360, 719, 897, 1530, 1636, 1816
MaeI CTAG 4 cut(s) 951, 1134, 1325, 1472
MaeII ACGT 2 cut(s) 850, 1165
MaeIII GTNAC 3 cut(s) 315, 958, 1129
MalI GATC 8 cut(s) 70, 138, 262, 729, 1461, 1679, 1917, 1934
MboI GATC 8 cut(s) 68, 136, 260, 727, 1459, 1677, 1915, 1932
MfeI CAATTG 4 cut(s) 86, 1106, 1385, 1817
MflI RGATCY 3 cut(s) 136, 1677, 1932
MhlI GDGCHC 2 cut(s) 484, 1727
MlsI TGGCCA 1 cut(s) 542
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 3 cut(s) 353, 862, 948
MmeI TCCRAC 1 cut(s) 662
MnlI CCTC 9 cut(s) 203, 221, 306, 389, 513, 1150, 1165, 1261, 1897
Mox20I TGGCCA 1 cut(s) 542
Mph1103I ATGCAT 1 cut(s) 712
MroXI GAANNNNTTC 2 cut(s) 413, 1179
MscI TGGCCA 1 cut(s) 542
MseI TTAA 6 cut(s) 753, 896, 1101, 1272, 1305, 1380
MslI CAYNNNNRTG 4 cut(s) 368, 487, 614, 1621
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 2 cut(s) 1586, 1838
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 2 cut(s) 225, 1035
MunI CAATTG 4 cut(s) 86, 1106, 1385, 1817
Mva1269I GAATGC 1 cut(s) 651
MvaI CCWGG 2 cut(s) 225, 1035
MwoI GCNNNNNNNGC 7 cut(s) 164, 443, 1592, 1595, 1604, 1819, 1835
NcoI CCATGG 1 cut(s) 543
NdeI CATATG 2 cut(s) 601, 1618
NdeII GATC 8 cut(s) 68, 136, 260, 727, 1459, 1677, 1915, 1932
NlaIV GGNNCC 1 cut(s) 1934
NmuCI GTSAC 2 cut(s) 315, 958
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 3 cut(s) 1195, 1406, 1636
NspV TTCGAA 1 cut(s) 1252
OliI CACNNNNGTG 1 cut(s) 487
PaeR7I CTCGAG 2 cut(s) 54, 1778
PagI TCATGA 1 cut(s) 454
PciI ACATGT 2 cut(s) 1191, 1632
PctI GAATGC 1 cut(s) 651
PdmI GAANNNNTTC 2 cut(s) 413, 1179
PfeI GAWTC 4 cut(s) 35, 449, 1027, 1423
PleI GAGTC 3 cut(s) 353, 862, 948
PpsI GAGTC 3 cut(s) 353, 862, 948
PscI ACATGT 2 cut(s) 1191, 1632
PsiI TTATAA 4 cut(s) 150, 324, 855, 1547
Psp1406I AACGTT 1 cut(s) 850
Psp6I CCWGG 2 cut(s) 223, 1033
PspGI CCWGG 2 cut(s) 223, 1033
PspN4I GGNNCC 1 cut(s) 1934
PspPI GGNCC 4 cut(s) 221, 630, 635, 1037
PspXI VCTCGAGB 1 cut(s) 1778
PstI CTGCAG 2 cut(s) 1843, 1891
PstNI CAGNNNCTG 1 cut(s) 224
PsuI RGATCY 3 cut(s) 136, 1677, 1932
PvuII CAGCTG 1 cut(s) 1586
RsaI GTAC 5 cut(s) 16, 273, 440, 461, 802
RsaNI GTAC 5 cut(s) 15, 272, 439, 460, 801
RseI CAYNNNNRTG 4 cut(s) 368, 487, 614, 1621
SaqAI TTAA 6 cut(s) 753, 896, 1101, 1272, 1305, 1380
Sau3AI GATC 8 cut(s) 68, 136, 260, 727, 1459, 1677, 1915, 1932
Sau96I GGNCC 4 cut(s) 221, 630, 635, 1037
SchI GAGTC 3 cut(s) 353, 862, 948
ScrFI CCNGG 2 cut(s) 225, 1035
SduI GDGCHC 2 cut(s) 484, 1727
SfaNI GCATC 7 cut(s) 176, 360, 719, 897, 1530, 1636, 1816
SfcI CTRYAG 2 cut(s) 1839, 1887
Sfr274I CTCGAG 2 cut(s) 54, 1778
SfuI TTCGAA 1 cut(s) 1252
SinI GGWCC 3 cut(s) 630, 635, 1037
SlaI CTCGAG 2 cut(s) 54, 1778
SmiMI CAYNNNNRTG 4 cut(s) 368, 487, 614, 1621
SmlI CTYRAG 4 cut(s) 54, 297, 380, 1778
SmoI CTYRAG 4 cut(s) 54, 297, 380, 1778
SsiI CCGC 5 cut(s) 446, 506, 1836, 1853, 1901
SspI AATATT 1 cut(s) 536
SspMI CTAG 4 cut(s) 951, 1134, 1325, 1472
StyD4I CCNGG 2 cut(s) 223, 1033
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 7 cut(s) 315, 674, 688, 964, 1047, 1244, 1345
TaiI ACGT 2 cut(s) 853, 1168
TaqI TCGA 7 cut(s) 55, 238, 891, 1030, 1147, 1252, 1779
TatI WGTACW 2 cut(s) 14, 459
TauI GCSGC 1 cut(s) 1838
TfiI GAWTC 4 cut(s) 35, 449, 1027, 1423
Tru1I TTAA 6 cut(s) 753, 896, 1101, 1272, 1305, 1380
Tru9I TTAA 6 cut(s) 753, 896, 1101, 1272, 1305, 1380
TscAI CASTG 2 cut(s) 890, 1221
TseFI GTSAC 2 cut(s) 315, 958
Tsp45I GTSAC 2 cut(s) 315, 958
TspGWI ACGGA 3 cut(s) 35, 996, 1584
TspRI CASTG 2 cut(s) 890, 1221
VpaK11BI GGWCC 3 cut(s) 630, 635, 1037
XapI RAATTY 1 cut(s) 251
XceI RCATGY 3 cut(s) 1195, 1406, 1636
XcmI CCANNNNNNNNNTGG 2 cut(s) 1091, 1926
XhoI CTCGAG 2 cut(s) 54, 1778
XmnI GAANNNNTTC 2 cut(s) 413, 1179
XspI CTAG 4 cut(s) 951, 1134, 1325, 1472
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.