Rroxscaffold_1G00050290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000220
Physical Location & Seq
Reverse (-)
70864895 .. 70870872
5978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00050290.1

Sequence Viewer

Length: 825 bp
ATGGCGATATCGCTTAATGGCCTAGTGAATGATTTGAAATTGGATACAACAAAACCCTCTTTGCTTTATCTGCTACCAAGTACTCATGCTCCAAGTTTCCAACCACATCATGATTCTATTTGCAATCATGAGGCAAATTATGGAAATGACAGGGGGAGTGGCAAATCATGGCACCACAACCAATATAGTAGTGATGATCATACTACTTATCCTGGTGCAAATCATGAATACAATTCTAGAGCTAGGGATGCACAAGGAAGACGCGATAGCCATTTGTCTCTAAATGAGTTTGAATCACTTTCTTCAAGTCTTGACTTAATGGATATAGGAACTCAATATAGTGATAACCCTAACCCATTCCATTCTCATTATCCTCATCATGAAATGAGTTCTACCTCGAAAGTACTTATGGAATTGGATCAAGCTCACAAGGTGGAAGCACATATGGCCTTTTTGATCATTTTTCATCCCAACCGCTGTATGCTTCATACAATGAAACACCGTATTGGCTATGTCGTCGCGACCGACGAGACCGAGACTGAGACAGCCACTATCACAAGCATCGCAGCAGCCGCGACTCTTCCGATGACCACCACCGCTAACCCCCGCGCTTCAAAGCCCGAGCACTACCACGACCACAGATCTAGCCGTGACAGGTCGCATGAGCCGCGGGATGACCGGGAAGAATCACGTGACCACCGCGAGCGGTTGTACGAGAGGGAAGGGAGTAGAGAGAAGGTCCAGGCATCGCGAAGTGAAGTGGGAGAGGTCGGAGAAGGAAGAAGATATGGTGGAGAGGGAGGCATAAGAGGAAAGAGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

31.02

Weight (kDa)

6.28

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 171
AccBSI CCGCTC 1 cut(s) 706
AccII CGCG 7 cut(s) 264, 521, 575, 609, 670, 702, 751
AciI CCGC 8 cut(s) 475, 573, 597, 607, 668, 670, 700, 706
AclWI GGATC 1 cut(s) 426
AcvI CACGTG 1 cut(s) 692
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 3 cut(s) 82, 405, 713
AgsI TTSAA 4 cut(s) 37, 293, 306, 615
AjnI CCWGG 2 cut(s) 211, 741
AluBI AGCT 2 cut(s) 242, 425
AluI AGCT 2 cut(s) 242, 425
Alw21I GWGCWC 1 cut(s) 627
Alw26I GTCTC 4 cut(s) 282, 524, 530, 536
AlwI GGATC 1 cut(s) 426
Ama87I CYCGRG 1 cut(s) 620
AoxI GGCC 2 cut(s) 19, 447
ApeKI GCWGC 2 cut(s) 566, 569
AspLEI GCGC 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 739
AsuC2I CCSGG 1 cut(s) 680
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 1 cut(s) 739
BanI GGYRCC 1 cut(s) 171
BbrPI CACGTG 1 cut(s) 692
BbsI GAAGAC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 2 cut(s) 578, 581
BceAI ACGGC 1 cut(s) 633
BciT130I CCWGG 2 cut(s) 213, 743
BciVI GTATCC 1 cut(s) 37
BclI TGATCA 2 cut(s) 196, 456
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 4 cut(s) 282, 524, 530, 536
BfaI CTAG 4 cut(s) 23, 237, 243, 645
BfuI GTATCC 1 cut(s) 37
BglII AGATCT 1 cut(s) 641
BisI GCNGC 4 cut(s) 567, 570, 573, 668
BlsI GCNGC 4 cut(s) 568, 571, 574, 669
BmcAI AGTACT 2 cut(s) 82, 405
Bme1390I CCNGG 3 cut(s) 213, 680, 743
Bme18I GGWCC 1 cut(s) 739
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 739
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 3 cut(s) 213, 680, 743
BmsI GCATC 3 cut(s) 238, 570, 755
BpiI GAAGAC 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 680
BsaAI YACGTR 1 cut(s) 692
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 668
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
BseBI CCWGG 2 cut(s) 213, 743
BseDI CCNNGG 1 cut(s) 668
BseGI GGATG 3 cut(s) 253, 466, 679
BseMII CTCAG 1 cut(s) 531
BseXI GCAGC 2 cut(s) 578, 581
Bsh1236I CGCG 7 cut(s) 264, 521, 575, 609, 670, 702, 751
Bsh1285I CGRYCG 1 cut(s) 525
BshFI GGCC 2 cut(s) 21, 449
BshNI GGYRCC 1 cut(s) 171
BsiEI CGRYCG 1 cut(s) 525
BsiHKAI GWGCWC 1 cut(s) 627
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 1 cut(s) 679
BsmAI GTCTC 4 cut(s) 282, 524, 530, 536
BsnI GGCC 2 cut(s) 21, 449
Bso31I GGTCTC 1 cut(s) 524
BsoBI CYCGRG 1 cut(s) 620
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 4 cut(s) 196, 418, 456, 641
Bsp68I TCGCGA 2 cut(s) 521, 751
BspACI CCGC 8 cut(s) 475, 573, 597, 607, 668, 670, 700, 706
BspANI GGCC 2 cut(s) 21, 449
BspCNI CTCAG 1 cut(s) 532
BspFNI CGCG 7 cut(s) 264, 521, 575, 609, 670, 702, 751
BspHI TCATGA 4 cut(s) 109, 127, 223, 379
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 1 cut(s) 426
BspT107I GGYRCC 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 524
BsrBI CCGCTC 1 cut(s) 706
BssECI CCNNGG 1 cut(s) 668
BssMI GATC 4 cut(s) 196, 418, 456, 641
Bst2UI CCWGG 2 cut(s) 213, 743
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 1 cut(s) 585
BstBAI YACGTR 1 cut(s) 692
BstC8I GCNNGC 1 cut(s) 704
BstDEI CTNAG 1 cut(s) 540
BstDSI CCRYGG 1 cut(s) 668
BstF5I GGATG 3 cut(s) 253, 466, 679
BstFNI CGCG 7 cut(s) 264, 521, 575, 609, 670, 702, 751
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 4 cut(s) 199, 421, 459, 644
BstMAI GTCTC 4 cut(s) 282, 524, 530, 536
BstMBI GATC 4 cut(s) 196, 418, 456, 641
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 5 cut(s) 70, 248, 446, 572, 667
BstNI CCWGG 2 cut(s) 213, 743
BstSCI CCNGG 3 cut(s) 211, 678, 741
BstUI CGCG 7 cut(s) 264, 521, 575, 609, 670, 702, 751
BstV1I GCAGC 2 cut(s) 578, 581
BstV2I GAAGAC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 21, 449
BtgI CCRYGG 1 cut(s) 668
BtgZI GCGATG 2 cut(s) 547, 732
BtsCI GGATG 3 cut(s) 253, 466, 679
BtuMI TCGCGA 2 cut(s) 521, 751
Cac8I GCNNGC 1 cut(s) 704
CciI TCATGA 4 cut(s) 109, 127, 223, 379
CfoI GCGC 1 cut(s) 611
Cfr13I GGNCC 1 cut(s) 739
Cfr42I CCGCGG 1 cut(s) 671
CseI GACGC 1 cut(s) 270
Csp6I GTAC 3 cut(s) 81, 404, 712
CviAII CATG 7 cut(s) 86, 110, 128, 168, 224, 380, 662
CviQI GTAC 3 cut(s) 81, 404, 712
DdeI CTNAG 1 cut(s) 540
DpnI GATC 4 cut(s) 198, 420, 458, 643
DpnII GATC 4 cut(s) 196, 418, 456, 641
DraIII CACNNNGTG 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 524
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 739
Eco72I CACGTG 1 cut(s) 692
Eco88I CYCGRG 1 cut(s) 620
EcoRII CCWGG 2 cut(s) 211, 741
EcoRV GATATC 1 cut(s) 9
FaeI CATG 7 cut(s) 89, 113, 131, 171, 227, 383, 665
FatI CATG 7 cut(s) 85, 109, 127, 167, 223, 379, 661
FauI CCCGC 2 cut(s) 614, 663
FauNDI CATATG 1 cut(s) 444
FbaI TGATCA 2 cut(s) 196, 456
Fnu4HI GCNGC 4 cut(s) 567, 570, 573, 668
FokI GGATG 3 cut(s) 260, 453, 686
Fsp4HI GCNGC 4 cut(s) 567, 570, 573, 668
FspBI CTAG 4 cut(s) 23, 237, 243, 645
GlaI GCGC 1 cut(s) 610
GluI GCNGC 4 cut(s) 567, 570, 573, 668
HaeIII GGCC 2 cut(s) 21, 449
HapII CCGG 1 cut(s) 679
HgaI GACGC 1 cut(s) 270
HhaI GCGC 1 cut(s) 611
Hin1II CATG 7 cut(s) 89, 113, 131, 171, 227, 383, 665
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HinfI GANTC 4 cut(s) 113, 293, 577, 686
HpaII CCGG 1 cut(s) 679
Hpy188I TCNGA 2 cut(s) 585, 773
Hpy188III TCNNGA 8 cut(s) 110, 128, 224, 237, 311, 380, 520, 750
Hpy99I CGWCG 2 cut(s) 521, 530
HpyAV CCTTC 3 cut(s) 716, 730, 770
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 3 cut(s) 123, 218, 251
HpyF10VI GCNNNNNNNGC 5 cut(s) 70, 248, 446, 572, 667
HpyF3I CTNAG 1 cut(s) 540
HpySE526I ACGT 1 cut(s) 691
Hsp92II CATG 7 cut(s) 89, 113, 131, 171, 227, 383, 665
HspAI GCGC 1 cut(s) 609
Ksp22I TGATCA 2 cut(s) 196, 456
KspI CCGCGG 1 cut(s) 671
Kzo9I GATC 4 cut(s) 196, 418, 456, 641
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 7 cut(s) 136, 198, 225, 640, 692, 728, 755
Lsp1109I GCAGC 2 cut(s) 578, 581
LweI GCATC 3 cut(s) 238, 570, 755
MaeI CTAG 4 cut(s) 23, 237, 243, 645
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 2 cut(s) 650, 692
MalI GATC 4 cut(s) 198, 420, 458, 643
MbiI CCGCTC 1 cut(s) 706
MboI GATC 4 cut(s) 196, 418, 456, 641
MboII GAAGA 6 cut(s) 270, 294, 572, 695, 792, 795
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 4 cut(s) 38, 136, 232, 413
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 2 cut(s) 124, 751
MseI TTAA 2 cut(s) 15, 317
MspA1I CMGCKG 2 cut(s) 477, 670
MspI CCGG 1 cut(s) 679
MspR9I CCNGG 3 cut(s) 213, 680, 743
MvaI CCWGG 2 cut(s) 213, 743
MvnI CGCG 7 cut(s) 264, 521, 575, 609, 670, 702, 751
MwoI GCNNNNNNNGC 5 cut(s) 70, 248, 446, 572, 667
NciI CCSGG 1 cut(s) 680
NdeI CATATG 1 cut(s) 444
NdeII GATC 4 cut(s) 196, 418, 456, 641
NlaIII CATG 7 cut(s) 89, 113, 131, 171, 227, 383, 665
NlaIV GGNNCC 1 cut(s) 173
NmuCI GTSAC 2 cut(s) 650, 692
NruI TCGCGA 2 cut(s) 521, 751
PagI TCATGA 4 cut(s) 109, 127, 223, 379
PcsI WCGNNNNNNNCGW 2 cut(s) 522, 525
PfeI GAWTC 3 cut(s) 113, 293, 686
PkrI GCNGC 4 cut(s) 568, 571, 574, 669
PleI GAGTC 1 cut(s) 571
PmaCI CACGTG 1 cut(s) 692
PmlI CACGTG 1 cut(s) 692
PpsI GAGTC 1 cut(s) 571
Ppu21I YACGTR 1 cut(s) 692
Psp6I CCWGG 2 cut(s) 211, 741
PspCI CACGTG 1 cut(s) 692
PspGI CCWGG 2 cut(s) 211, 741
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 1 cut(s) 739
PsuI RGATCY 1 cut(s) 641
RruI TCGCGA 2 cut(s) 521, 751
RsaI GTAC 3 cut(s) 82, 405, 713
RsaNI GTAC 3 cut(s) 81, 404, 712
SacII CCGCGG 1 cut(s) 671
SaqAI TTAA 2 cut(s) 15, 317
SatI GCNGC 4 cut(s) 567, 570, 573, 668
Sau3AI GATC 4 cut(s) 196, 418, 456, 641
Sau96I GGNCC 1 cut(s) 739
ScaI AGTACT 2 cut(s) 82, 405
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 3 cut(s) 213, 680, 743
SduI GDGCHC 1 cut(s) 627
SetI ASST 8 cut(s) 244, 398, 427, 435, 659, 694, 741, 771
SfaNI GCATC 3 cut(s) 238, 570, 755
Sfr303I CCGCGG 1 cut(s) 671
SgrBI CCGCGG 1 cut(s) 671
SinI GGWCC 1 cut(s) 739
Sse9I AATT 4 cut(s) 38, 136, 232, 413
SsiI CCGC 8 cut(s) 475, 573, 597, 607, 668, 670, 700, 706
SspMI CTAG 4 cut(s) 23, 237, 243, 645
StyD4I CCNGG 3 cut(s) 211, 678, 741
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 1 cut(s) 694
TaqI TCGA 1 cut(s) 398
TaqII GACCGA 2 cut(s) 539, 548
TasI AATT 4 cut(s) 38, 136, 232, 413
TatI WGTACW 2 cut(s) 80, 403
TauI GCSGC 2 cut(s) 575, 670
TfiI GAWTC 3 cut(s) 113, 293, 686
Tru1I TTAA 2 cut(s) 15, 317
Tru9I TTAA 2 cut(s) 15, 317
TseFI GTSAC 2 cut(s) 650, 692
TseI GCWGC 2 cut(s) 566, 569
Tsp45I GTSAC 2 cut(s) 650, 692
TspDTI ATGAA 5 cut(s) 240, 396, 455, 476, 509
VpaK11BI GGWCC 1 cut(s) 739
XbaI TCTAGA 1 cut(s) 236
XspI CTAG 4 cut(s) 23, 237, 243, 645
ZrmI AGTACT 2 cut(s) 82, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.