Rmu_sc0001851.1_g000006

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001851.1
OG0000220
Physical Location & Seq
Reverse (-)
21507 .. 22664
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001851.1_g000006.1.cds

Sequence Viewer

Length: 1158 bp
atgaagctacaattgcgagatgcaaaagccgctgcagatagagttgcggagaccagttatttagacctattcaatatagctgcagatataggtgcggaggaaactgctgatccaatataccattgggttcgacctttacatttagatgatgcagcaggaaatccagatccaaatatagcaacacatgctcgtggaatgagaattgatgtggatattttagacctattcaatatagctgcagatataggtgcggaggaaactgctgatccaatataccattgggttcgacctttacatttagatgatgcagcaggaaatccagatccaaatatagcaacacatgctcgtggaatgggaattgatgtggataaggtaatgaagaaagaagtaacagatcattctgatgaaagtgatggaagtggttataaattatcaagaggcactagtgaaaaatcaattgatgatgatgatgatgatgatgatggtgatggtgatggtggtaatactggtggtggtagcagatatcatgcctatggtggtagtacacgtgataactcgtgtgacaatagtagttatgacgacactaatcgtgaggtgaattatggaaatgacagggggggtggcaaatcatggcactacaaccaatatagtagtgatgatcatactacttatcctgatgcaaatagtgaatacaattctagagctagggatacacaaggaagacgcgatagccatttgtctctaaatgagtttgaatcactttcttcaagtcttggctcaatggacataggaactcaatatagtgataaccctaacccattccattctcatcatcctcatcatgaaatgagttctacctcagaaagtacttacggaattggatcaagctcacaaggtggaagcacatatggcctttttgatcattcttcgtcccaaatgtcgcatgcttcataccatgaaacaccatattgggtaattccacaattttcgatatatggattgcatgtgggaagagatcaacacacatacattacccatgtgatgaagtaccaaaatcatttccaaaattcatgtacttgggagcagtattgtatgatactaaatgggagcagttcaaccacatggatcgaaccacatcgtagtagctcttattactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

385

Amino Acids

42.71

Weight (kDa)

4.78

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 426
AccII CGCG 1 cut(s) 726
AciI CCGC 4 cut(s) 30, 47, 95, 251
AclWI GGATC 6 cut(s) 104, 161, 260, 317, 889, 1133
AcsI RAATTY 1 cut(s) 1066
AcvI CACGTG 1 cut(s) 548
AdeI CACNNNGTG 1 cut(s) 896
AfaI GTAC 4 cut(s) 544, 868, 1049, 1075
AflIII ACRYGT 1 cut(s) 545
AgsI TTSAA 5 cut(s) 73, 229, 755, 768, 1116
AhlI ACTAGT 1 cut(s) 443
AluBI AGCT 6 cut(s) 7, 80, 236, 704, 888, 1146
AluI AGCT 6 cut(s) 7, 80, 236, 704, 888, 1146
Alw26I GTCTC 2 cut(s) 44, 744
AlwI GGATC 6 cut(s) 104, 161, 260, 317, 889, 1133
AoxI GGCC 1 cut(s) 910
ApeKI GCWGC 5 cut(s) 32, 80, 152, 236, 308
ApoI RAATTY 1 cut(s) 1066
AsuHPI GGTGA 3 cut(s) 497, 503, 607
BauI CACGAG 3 cut(s) 189, 345, 556
BbrPI CACGTG 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 727
BbvI GCAGC 5 cut(s) 19, 67, 164, 223, 320
BccI CCATC 4 cut(s) 407, 476, 482, 488
BciVI GTATCC 1 cut(s) 703
BclI TGATCA 2 cut(s) 658, 919
BcoDI GTCTC 2 cut(s) 44, 744
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 3 cut(s) 444, 699, 705
BfmI CTRYAG 3 cut(s) 33, 81, 237
BfuI GTATCC 1 cut(s) 703
BisI GCNGC 6 cut(s) 30, 33, 81, 153, 237, 309
BlsI GCNGC 6 cut(s) 31, 34, 82, 154, 238, 310
BmcAI AGTACT 1 cut(s) 868
BmsI GCATC 4 cut(s) 10, 139, 295, 667
BpiI GAAGAC 1 cut(s) 727
BsaAI YACGTR 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 54, 511
BseGI GGATG 1 cut(s) 832
BseMII CTCAG 1 cut(s) 873
BseNI ACTGG 2 cut(s) 54, 511
BseXI GCAGC 5 cut(s) 19, 67, 164, 223, 320
Bsh1236I CGCG 1 cut(s) 726
BshFI GGCC 1 cut(s) 912
BslFI GGGAC 1 cut(s) 916
BsmAI GTCTC 2 cut(s) 44, 744
BsmFI GGGAC 1 cut(s) 916
BsnI GGCC 1 cut(s) 912
Bso31I GGTCTC 1 cut(s) 44
BspACI CCGC 4 cut(s) 30, 47, 95, 251
BspANI GGCC 1 cut(s) 912
BspCNI CTCAG 1 cut(s) 872
BspFNI CGCG 1 cut(s) 726
BspHI TCATGA 1 cut(s) 841
BspMAI CTGCAG 3 cut(s) 37, 85, 241
BspPI GGATC 6 cut(s) 104, 161, 260, 317, 889, 1133
BspTNI GGTCTC 1 cut(s) 44
BsrI ACTGG 2 cut(s) 54, 511
BssSI CACGAG 3 cut(s) 189, 345, 556
Bst2BI CACGAG 3 cut(s) 189, 345, 556
Bst6I CTCTTC 1 cut(s) 1006
BstAPI GCANNNNNTGC 2 cut(s) 185, 341
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 945
BstDEI CTNAG 1 cut(s) 859
BstF5I GGATG 1 cut(s) 832
BstFNI CGCG 1 cut(s) 726
BstMAI GTCTC 2 cut(s) 44, 744
BstMWI GCNNNNNNNGC 5 cut(s) 13, 29, 185, 341, 909
BstNSI RCATGY 4 cut(s) 188, 344, 947, 1007
BstSFI CTRYAG 3 cut(s) 33, 81, 237
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 5 cut(s) 19, 67, 164, 223, 320
BstV2I GAAGAC 1 cut(s) 727
BstX2I RGATCY 2 cut(s) 166, 322
BstYI RGATCY 2 cut(s) 166, 322
BsuI GTATCC 1 cut(s) 703
BsuRI GGCC 1 cut(s) 912
BtsCI GGATG 1 cut(s) 832
Cac8I GCNNGC 1 cut(s) 945
CciI TCATGA 1 cut(s) 841
CseI GACGC 1 cut(s) 732
Csp6I GTAC 4 cut(s) 543, 867, 1048, 1074
CviQI GTAC 4 cut(s) 543, 867, 1048, 1074
DdeI CTNAG 1 cut(s) 859
DraIII CACNNNGTG 1 cut(s) 896
Eam1104I CTCTTC 1 cut(s) 1006
EarI CTCTTC 1 cut(s) 1006
Eco31I GGTCTC 1 cut(s) 44
Eco32I GATATC 1 cut(s) 524
Eco72I CACGTG 1 cut(s) 548
EcoRV GATATC 1 cut(s) 524
FaqI GGGAC 1 cut(s) 916
FauNDI CATATG 1 cut(s) 907
FbaI TGATCA 2 cut(s) 658, 919
Fnu4HI GCNGC 6 cut(s) 30, 33, 81, 153, 237, 309
FokI GGATG 1 cut(s) 819
Fsp4HI GCNGC 6 cut(s) 30, 33, 81, 153, 237, 309
FspBI CTAG 3 cut(s) 444, 699, 705
GluI GCNGC 6 cut(s) 30, 33, 81, 153, 237, 309
HaeIII GGCC 1 cut(s) 912
HgaI GACGC 1 cut(s) 732
HinfI GANTC 1 cut(s) 755
HphI GGTGA 3 cut(s) 497, 503, 607
Hpy166II GTNNAC 1 cut(s) 545
Hpy188I TCNGA 2 cut(s) 403, 862
Hpy188III TCNNGA 7 cut(s) 164, 320, 435, 590, 674, 699, 842
Hpy8I GTNNAC 1 cut(s) 545
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 8 cut(s) 23, 35, 83, 152, 239, 308, 680, 1003
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 29, 185, 341, 909
HpyF3I CTNAG 1 cut(s) 859
HpySE526I ACGT 1 cut(s) 547
Ksp22I TGATCA 2 cut(s) 658, 919
LmnI GCTCC 2 cut(s) 1081, 1107
LpnPI CCDG 8 cut(s) 67, 141, 177, 297, 333, 492, 598, 687
Lsp1109I GCAGC 5 cut(s) 19, 67, 164, 223, 320
LweI GCATC 4 cut(s) 10, 139, 295, 667
MaeI CTAG 3 cut(s) 444, 699, 705
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 2 cut(s) 388, 560
MboII GAAGA 5 cut(s) 391, 732, 756, 918, 1023
MfeI CAATTG 2 cut(s) 11, 456
MflI RGATCY 2 cut(s) 166, 322
MnlI CCTC 6 cut(s) 91, 247, 431, 586, 846, 868
MslI CAYNNNNRTG 6 cut(s) 144, 189, 300, 345, 402, 531
MspA1I CMGCKG 1 cut(s) 32
MunI CAATTG 2 cut(s) 11, 456
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 5 cut(s) 13, 29, 185, 341, 909
NdeI CATATG 1 cut(s) 907
NmuCI GTSAC 1 cut(s) 560
NspI RCATGY 4 cut(s) 188, 344, 947, 1007
PaeI GCATGC 1 cut(s) 947
PagI TCATGA 1 cut(s) 841
PfeI GAWTC 1 cut(s) 755
PkrI GCNGC 6 cut(s) 31, 34, 82, 154, 238, 310
PmaCI CACGTG 1 cut(s) 548
PmlI CACGTG 1 cut(s) 548
Ppu21I YACGTR 1 cut(s) 548
PsiI TTATAA 1 cut(s) 426
PspCI CACGTG 1 cut(s) 548
PstI CTGCAG 3 cut(s) 37, 85, 241
PsuI RGATCY 2 cut(s) 166, 322
RsaI GTAC 4 cut(s) 544, 868, 1049, 1075
RsaNI GTAC 4 cut(s) 543, 867, 1048, 1074
RseI CAYNNNNRTG 6 cut(s) 144, 189, 300, 345, 402, 531
SatI GCNGC 6 cut(s) 30, 33, 81, 153, 237, 309
ScaI AGTACT 1 cut(s) 868
SfaNI GCATC 4 cut(s) 10, 139, 295, 667
SfcI CTRYAG 3 cut(s) 33, 81, 237
SmiMI CAYNNNNRTG 6 cut(s) 144, 189, 300, 345, 402, 531
SpeI ACTAGT 1 cut(s) 443
SphI GCATGC 1 cut(s) 947
SsiI CCGC 4 cut(s) 30, 47, 95, 251
SspMI CTAG 3 cut(s) 444, 699, 705
TaiI ACGT 1 cut(s) 550
TaqI TCGA 4 cut(s) 130, 286, 989, 1128
TatI WGTACW 3 cut(s) 542, 866, 1073
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 755
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 5 cut(s) 32, 80, 152, 236, 308
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 8 cut(s) 17, 392, 420, 858, 939, 972, 1058, 1059
TspGWI ACGGA 1 cut(s) 888
XapI RAATTY 1 cut(s) 1066
XbaI TCTAGA 1 cut(s) 698
XceI RCATGY 4 cut(s) 188, 344, 947, 1007
XcmI CCANNNNNNNNNTGG 2 cut(s) 120, 276
XspI CTAG 3 cut(s) 444, 699, 705
ZrmI AGTACT 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.