Rmu_ssc0000420.1_g000006

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000420.1
OG0000220
Physical Location & Seq
Reverse (-)
22226 .. 25416
3191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000420.1_g000006.1.cds

Sequence Viewer

Length: 1134 bp
atgtcctcgatttctggtgagttggattggttggttcttggccttaatttcgggactactatgctaggactgctcacagtggctcagaacggcagttggttcaggatttggtggctatggtggatgtgtagggttgagacagcgctggaggagatgacagtcatgaggatgggcggtgttggttgggcactcgccaggtgggatggtctgctattgttggggatgacagagatgtttcagggagatggacctaggagatctttaactgggtcttttgctcaactgtcacgggtaaagggaagctctaagcttcctgttcctcggaagtcaaggaaccgtttggcatatcagaagttggaaaagctaatatattgctactacaacatgaagctgcggttgcgagataaacaggcaaagaataatgtggtcaatgaaaacaactatattgatctacttcatgttgcaagcgagccgcttgataatggcattgatccacttcatgattggattatgcctgcacacctcgaagatgaagctggaagacctcttccacaagttgtagaaactgcaactaatgctggaatcaacatagagagagtcttatatgaagaagttgttaaaaacccagaagataattcagatagtgatgatgcgtggggtggtgcagcaactccagatagttctgatgatggtggagagggtggaagcggaacaggtggtaattttgatcatgccacccaagatgaagaccacggagtgagaacaactggccatggtgctcaagagaagacccgatatgggaggaggactagaagtgcaactgatgatcaaagtaccccatctgatgtttcttcaattgccttaagttttgactctatcagtttaggcacagagcgcagtgggatctcaaatgaatctcatgaaggcaacaatcaatttggttatgatgcttatggatataatcaatatggaaaagtatatgatcagtcatctaattgggttcatccttattatcccattacaggggaaacagtcggtaactttaaagagatctataattatcatgttcatcactacaattcgcactatataggtcatatgtcttggtctgattattgcattttcgtagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

377

Amino Acids

42.32

Weight (kDa)

5.11

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1128
AciI CCGC 4 cut(s) 174, 394, 473, 708
AclWI GGATC 2 cut(s) 485, 911
AcoI YGGCCR 1 cut(s) 769
AdeI CACNNNGTG 1 cut(s) 757
AfaI GTAC 1 cut(s) 835
AfeI AGCGCT 1 cut(s) 144
AfiI CCNNNNNNNGG 3 cut(s) 798, 1022, 1023
AflII CTTAAG 1 cut(s) 862
AgsI TTSAA 1 cut(s) 855
AjnI CCWGG 1 cut(s) 194
AluBI AGCT 5 cut(s) 303, 310, 364, 391, 536
AluI AGCT 5 cut(s) 303, 310, 364, 391, 536
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 2 cut(s) 485, 911
Aor51HI AGCGCT 1 cut(s) 144
AoxI GGCC 2 cut(s) 40, 769
ApeKI GCWGC 2 cut(s) 391, 665
AspA2I CCTAGG 1 cut(s) 251
AspLEI GCGC 2 cut(s) 145, 897
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 248
AvrII CCTAGG 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 190
BalI TGGCCA 1 cut(s) 771
BbsI GAAGAC 3 cut(s) 547, 753, 794
Bbv12I GWGCWC 1 cut(s) 781
BbvI GCAGC 2 cut(s) 378, 677
BccI CCATC 5 cut(s) 163, 197, 239, 683, 847
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 196
BclI TGATCA 3 cut(s) 727, 826, 982
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 4 cut(s) 65, 252, 810, 1132
BfoI RGCGCY 1 cut(s) 146
BfrI CTTAAG 1 cut(s) 862
BglII AGATCT 2 cut(s) 257, 1050
BisI GCNGC 3 cut(s) 392, 473, 666
BlnI CCTAGG 1 cut(s) 251
BlsI GCNGC 3 cut(s) 393, 474, 667
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 640, 937
BmuI ACTGGG 1 cut(s) 276
BpiI GAAGAC 3 cut(s) 547, 753, 794
BpmI CTGGAG 2 cut(s) 167, 657
BpuEI CTTGAG 1 cut(s) 765
BsaJI CCNNGG 4 cut(s) 251, 320, 751, 772
Bsc4I CCNNNNNNNGG 3 cut(s) 798, 1022, 1023
Bse1I ACTGG 2 cut(s) 271, 772
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 4 cut(s) 251, 320, 751, 772
BseGI GGATG 5 cut(s) 129, 174, 208, 228, 1003
BseLI CCNNNNNNNGG 3 cut(s) 798, 1022, 1023
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 2 cut(s) 271, 772
BseRI GAGGAG 2 cut(s) 164, 817
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 2 cut(s) 378, 677
BsgI GTGCAG 2 cut(s) 501, 684
BshFI GGCC 2 cut(s) 42, 771
BsiHKAI GWGCWC 1 cut(s) 781
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 3 cut(s) 798, 1022, 1023
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 2 cut(s) 42, 771
Bsp1286I GDGCHC 2 cut(s) 190, 781
Bsp143I GATC 8 cut(s) 257, 448, 490, 727, 826, 903, 982, 1050
Bsp19I CCATGG 1 cut(s) 772
BspACI CCGC 4 cut(s) 174, 394, 473, 708
BspANI GGCC 2 cut(s) 42, 771
BspCNI CTCAG 1 cut(s) 97
BspHI TCATGA 3 cut(s) 162, 499, 919
BspLI GGNNCC 1 cut(s) 335
BspPI GGATC 2 cut(s) 485, 911
BspTI CTTAAG 1 cut(s) 862
BsrI ACTGG 2 cut(s) 271, 772
BssECI CCNNGG 4 cut(s) 251, 320, 751, 772
BssMI GATC 8 cut(s) 257, 448, 490, 727, 826, 903, 982, 1050
BssT1I CCWWGG 2 cut(s) 251, 772
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 5 cut(s) 79, 160, 285, 338, 1033
Bst6I CTCTTC 1 cut(s) 552
BstAFI CTTAAG 1 cut(s) 862
BstAPI GCANNNNNTGC 1 cut(s) 575
BstC8I GCNNGC 3 cut(s) 466, 470, 516
BstDEI CTNAG 2 cut(s) 84, 306
BstDSI CCRYGG 2 cut(s) 751, 772
BstF5I GGATG 5 cut(s) 129, 174, 208, 228, 1003
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 2 cut(s) 145, 897
BstKTI GATC 8 cut(s) 260, 451, 493, 730, 829, 906, 985, 1053
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 8 cut(s) 257, 448, 490, 727, 826, 903, 982, 1050
BstMWI GCNNNNNNNGC 4 cut(s) 70, 397, 575, 894
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 194
BstSLI GKGCMC 1 cut(s) 190
BstV1I GCAGC 2 cut(s) 378, 677
BstV2I GAAGAC 3 cut(s) 547, 753, 794
BstX2I RGATCY 3 cut(s) 257, 903, 1050
BstYI RGATCY 3 cut(s) 257, 903, 1050
BsuRI GGCC 2 cut(s) 42, 771
BtgI CCRYGG 2 cut(s) 751, 772
BtsCI GGATG 5 cut(s) 129, 174, 208, 228, 1003
BtsI GCAGTG 1 cut(s) 904
BtsIMutI CAGTG 2 cut(s) 84, 904
Cac8I GCNNGC 3 cut(s) 466, 470, 516
CciI TCATGA 3 cut(s) 162, 499, 919
CfoI GCGC 2 cut(s) 145, 897
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 834
CviAII CATG 8 cut(s) 163, 385, 458, 500, 731, 773, 920, 1064
CviQI GTAC 1 cut(s) 834
DdeI CTNAG 2 cut(s) 84, 306
DpnI GATC 8 cut(s) 259, 450, 492, 729, 828, 905, 984, 1052
DpnII GATC 8 cut(s) 257, 448, 490, 727, 826, 903, 982, 1050
DraI TTTAAA 1 cut(s) 1045
DraIII CACNNNGTG 1 cut(s) 757
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco130I CCWWGG 2 cut(s) 251, 772
Eco47I GGWCC 1 cut(s) 248
Eco47III AGCGCT 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 194
EcoT14I CCWWGG 2 cut(s) 251, 772
ErhI CCWWGG 2 cut(s) 251, 772
FaeI CATG 8 cut(s) 166, 388, 461, 503, 734, 776, 923, 1067
FaqI GGGAC 1 cut(s) 67
FatI CATG 8 cut(s) 162, 384, 457, 499, 730, 772, 919, 1063
FauNDI CATATG 1 cut(s) 1098
FbaI TGATCA 3 cut(s) 727, 826, 982
FblI GTMKAC 1 cut(s) 1128
Fnu4HI GCNGC 3 cut(s) 392, 473, 666
FokI GGATG 5 cut(s) 136, 181, 215, 235, 990
Fsp4HI GCNGC 3 cut(s) 392, 473, 666
FspBI CTAG 4 cut(s) 65, 252, 810, 1132
GlaI GCGC 2 cut(s) 144, 896
GluI GCNGC 3 cut(s) 392, 473, 666
GsuI CTGGAG 2 cut(s) 167, 657
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 2 cut(s) 42, 771
HhaI GCGC 2 cut(s) 145, 897
Hin1II CATG 8 cut(s) 166, 388, 461, 503, 734, 776, 923, 1067
Hin6I GCGC 2 cut(s) 143, 895
HinP1I GCGC 2 cut(s) 143, 895
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 4 cut(s) 582, 597, 872, 914
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 1129
Hpy188I TCNGA 7 cut(s) 87, 324, 351, 640, 685, 844, 1111
Hpy188III TCNNGA 7 cut(s) 52, 103, 163, 500, 674, 782, 920
Hpy8I GTNNAC 1 cut(s) 1129
HpyAV CCTTC 1 cut(s) 917
HpyCH4III ACNGT 5 cut(s) 79, 160, 285, 338, 1033
HpyCH4V TGCA 6 cut(s) 464, 518, 569, 665, 818, 1119
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 397, 575, 894
HpyF3I CTNAG 2 cut(s) 84, 306
Hsp92II CATG 8 cut(s) 166, 388, 461, 503, 734, 776, 923, 1067
HspAI GCGC 2 cut(s) 143, 895
Ksp22I TGATCA 3 cut(s) 727, 826, 982
Kzo9I GATC 8 cut(s) 257, 448, 490, 727, 826, 903, 982, 1050
Lsp1109I GCAGC 2 cut(s) 378, 677
LweI GCATC 2 cut(s) 640, 937
MaeI CTAG 4 cut(s) 65, 252, 810, 1132
MaeIII GTNAC 2 cut(s) 285, 1037
MalI GATC 8 cut(s) 259, 450, 492, 729, 828, 905, 984, 1052
MboI GATC 8 cut(s) 257, 448, 490, 727, 826, 903, 982, 1050
MboII GAAGA 8 cut(s) 539, 539, 552, 620, 641, 758, 799, 843
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 3 cut(s) 257, 903, 1050
MhlI GDGCHC 2 cut(s) 190, 781
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 8 cut(s) 46, 634, 721, 855, 935, 994, 1057, 1078
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 2 cut(s) 606, 866
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 9 cut(s) 16, 142, 159, 330, 533, 555, 691, 795, 798
Mox20I TGGCCA 1 cut(s) 771
MscI TGGCCA 1 cut(s) 771
MseI TTAA 5 cut(s) 45, 263, 618, 863, 1044
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 771
MspCI CTTAAG 1 cut(s) 862
MspR9I CCNGG 1 cut(s) 196
MunI CAATTG 1 cut(s) 855
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 4 cut(s) 70, 397, 575, 894
NcoI CCATGG 1 cut(s) 772
NdeI CATATG 1 cut(s) 1098
NdeII GATC 8 cut(s) 257, 448, 490, 727, 826, 903, 982, 1050
NlaIII CATG 8 cut(s) 166, 388, 461, 503, 734, 776, 923, 1067
NlaIV GGNNCC 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 285
PagI TCATGA 3 cut(s) 162, 499, 919
PfeI GAWTC 2 cut(s) 582, 914
PkrI GCNGC 3 cut(s) 393, 474, 667
PleI GAGTC 2 cut(s) 605, 866
PpsI GAGTC 2 cut(s) 605, 866
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 335
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 3 cut(s) 257, 903, 1050
RsaI GTAC 1 cut(s) 835
RsaNI GTAC 1 cut(s) 834
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 5 cut(s) 45, 263, 618, 863, 1044
SatI GCNGC 3 cut(s) 392, 473, 666
Sau3AI GATC 8 cut(s) 257, 448, 490, 727, 826, 903, 982, 1050
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 2 cut(s) 606, 866
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 2 cut(s) 190, 781
SfaNI GCATC 2 cut(s) 640, 937
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 780, 862
SmoI CTYRAG 2 cut(s) 780, 862
Sse9I AATT 8 cut(s) 46, 634, 721, 855, 935, 994, 1057, 1078
SsiI CCGC 4 cut(s) 174, 394, 473, 708
SspMI CTAG 4 cut(s) 65, 252, 810, 1132
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 2 cut(s) 251, 772
TaaI ACNGT 5 cut(s) 79, 160, 285, 338, 1033
TaqI TCGA 2 cut(s) 8, 525
TasI AATT 8 cut(s) 46, 634, 721, 855, 935, 994, 1057, 1078
TauI GCSGC 1 cut(s) 475
TfiI GAWTC 2 cut(s) 582, 914
Tru1I TTAA 5 cut(s) 45, 263, 618, 863, 1044
Tru9I TTAA 5 cut(s) 45, 263, 618, 863, 1044
TscAI CASTG 2 cut(s) 84, 904
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 2 cut(s) 391, 665
Tsp45I GTSAC 1 cut(s) 285
TspGWI ACGGA 1 cut(s) 768
TspRI CASTG 2 cut(s) 84, 904
Vha464I CTTAAG 1 cut(s) 862
VpaK11BI GGWCC 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
XmaJI CCTAGG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 1128
XspI CTAG 4 cut(s) 65, 252, 810, 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.